Wall clock time and date at job start Mon Mar 30 2020 07:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48503 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47176 * 299.99951 * 3 2 1 6 6 H 1.48491 * 109.47265 * 59.99913 * 3 2 1 7 7 C 1.37881 * 119.99373 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99399 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00254 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.66562 * 61.76089 * 9 7 2 11 11 C 1.55004 * 110.75136 * 298.54667 * 9 7 2 12 12 C 1.55816 * 102.79049 * 241.67569 * 11 9 7 13 13 H 1.08997 * 115.38815 * 158.83559 * 12 11 9 14 14 O 1.46540 * 101.24111 * 32.41794 * 12 11 9 15 15 C 1.46532 * 99.68252 * 305.83711 * 14 12 11 16 16 H 1.09003 * 115.68032 * 179.65438 * 15 14 12 17 17 C 1.55818 * 101.24765 * 305.84471 * 15 14 12 18 18 H 1.08999 * 110.74354 * 274.09338 * 17 15 14 19 19 C 1.50696 * 110.75069 * 150.73902 * 17 15 14 20 20 O 1.20827 * 119.99957 * 17.65365 * 19 17 15 21 21 O 1.34230 * 120.00199 * 197.64459 * 19 17 15 22 22 C 1.55007 * 102.78589 * 32.41554 * 17 15 14 23 23 H 1.09004 * 110.90153 * 241.60333 * 22 17 15 24 24 C 1.50699 * 110.74681 * 118.33069 * 22 17 15 25 25 O 1.20827 * 119.99633 * 316.70394 * 24 22 17 26 26 O 1.34224 * 120.00381 * 136.71374 * 24 22 17 27 27 H 0.97000 * 119.99595 * 0.02562 * 1 2 3 28 28 H 1.08996 * 110.74505 * 123.34844 * 11 9 7 29 29 H 1.09002 * 110.74490 * 0.02562 * 11 9 7 30 30 H 0.96695 * 116.99935 * 180.02562 * 21 19 17 31 31 H 0.96698 * 117.00578 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6404 -2.5908 -0.8988 11 6 0.3770 -2.6287 1.2730 12 6 0.9687 -3.8900 1.9707 13 1 0.7649 -3.9724 3.0383 14 8 2.3793 -3.7942 1.5854 15 6 2.2317 -3.7030 0.1304 16 1 3.1600 -3.6129 -0.4339 17 6 1.3727 -4.9683 -0.1679 18 1 2.0077 -5.8456 -0.2914 19 6 0.5122 -4.7544 -1.3864 20 8 0.7714 -3.8633 -2.1601 21 8 -0.5420 -5.5539 -1.6124 22 6 0.4988 -5.0978 1.1057 23 1 0.6953 -6.0395 1.6181 24 6 -0.9638 -4.9731 0.7644 25 8 -1.3332 -4.1214 -0.0089 26 8 -1.8561 -5.8081 1.3197 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6685 -2.7880 1.0093 29 1 0.4862 -1.7490 1.9074 30 1 -1.0640 -5.3781 -2.4071 31 1 -2.7828 -5.6892 1.0705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025983578.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:33 Heat of formation + Delta-G solvation = -210.073150 kcal Electronic energy + Delta-G solvation = -20891.585605 eV Core-core repulsion = 17524.613759 eV Total energy + Delta-G solvation = -3366.971846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.08274 -40.54939 -40.18046 -37.16510 -36.84178 -35.09947 -33.49195 -31.58425 -31.00756 -27.12377 -25.45008 -24.17769 -21.95801 -21.71608 -20.76912 -19.23717 -18.96620 -18.63003 -18.07607 -17.46839 -17.00727 -16.64578 -16.40295 -16.12551 -15.14511 -14.94230 -14.57668 -14.11755 -13.70674 -13.54238 -13.30343 -13.11737 -12.87782 -12.85337 -12.64500 -12.33811 -12.22893 -12.09442 -11.83044 -11.41406 -11.30471 -10.96215 -10.56003 -10.50188 -10.32785 -8.08422 -6.16093 1.06480 1.36303 1.37252 1.49560 1.53118 1.86369 2.34446 2.43020 3.03229 3.21157 3.26072 3.43727 3.89264 3.99563 4.26733 4.37225 4.40757 4.57949 4.62660 4.78121 4.98165 5.10956 5.23821 5.44195 5.60677 5.71018 5.76676 5.94048 6.17877 6.39938 6.92083 7.07722 7.11937 7.47287 9.00077 Molecular weight = 256.09amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.008735 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.612452 B = 3204.873462 C = 3267.704461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.520 4.520 8 H 0.049 0.951 9 C 0.004 3.996 10 H 0.050 0.950 11 C -0.138 4.138 12 C 0.070 3.930 13 H 0.165 0.835 14 O -0.366 6.366 15 C 0.080 3.920 16 H 0.132 0.868 17 C -0.095 4.095 18 H 0.168 0.832 19 C 0.496 3.504 20 O -0.530 6.530 21 O -0.513 6.513 22 C -0.095 4.095 23 H 0.164 0.836 24 C 0.495 3.505 25 O -0.520 6.520 26 O -0.500 6.500 27 H 0.255 0.745 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.419 0.581 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 -15.596 3.085 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.558 4.558 8 H 0.067 0.933 9 C -0.015 4.015 10 H 0.067 0.933 11 C -0.176 4.176 12 C 0.013 3.987 13 H 0.182 0.818 14 O -0.285 6.285 15 C 0.023 3.977 16 H 0.150 0.850 17 C -0.114 4.114 18 H 0.185 0.815 19 C 0.340 3.660 20 O -0.420 6.420 21 O -0.327 6.327 22 C -0.115 4.115 23 H 0.181 0.819 24 C 0.338 3.662 25 O -0.411 6.411 26 O -0.313 6.313 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.279 0.721 31 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -1.352 -15.140 3.272 15.548 hybrid contribution -0.972 1.721 -1.073 2.250 sum -2.325 -13.419 2.199 13.795 Atomic orbital electron populations 1.70175 1.07179 1.26548 1.51988 1.25737 0.95657 1.02339 0.95440 0.85602 0.79252 0.79997 0.77395 1.18944 1.21026 1.20547 1.21479 0.92714 0.92210 1.49414 0.93296 1.20740 0.93206 0.92123 0.95390 0.93264 1.23480 1.00347 0.95527 0.98267 1.24830 0.81584 0.92372 0.99917 0.81814 1.90006 1.24005 1.94119 1.20329 1.24673 0.98506 0.92929 0.81630 0.85024 1.22828 0.96116 1.03703 0.88776 0.81510 1.22855 0.78967 0.77705 0.86497 1.90713 1.71452 1.31163 1.48633 1.84366 1.40388 1.57642 1.50273 1.22665 0.86891 1.04773 0.97125 0.81864 1.22838 0.89450 0.77239 0.76633 1.90742 1.80953 1.34624 1.34742 1.84430 1.23334 1.56127 1.67453 0.93600 0.91520 0.94989 0.72071 0.71329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.68 12.38 21.45 0.27 -57.42 16 2 C 0.01 0.36 5.12 84.65 0.43 0.79 16 3 Si 0.95 46.94 29.54 68.60 2.03 48.97 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.52 -30.84 8.52 25.60 0.22 -30.62 16 8 H 0.05 2.86 7.78 -2.91 -0.02 2.84 16 9 C 0.00 0.19 1.79 -9.88 -0.02 0.17 16 10 H 0.05 2.97 4.44 -3.28 -0.01 2.95 16 11 C -0.14 -6.70 4.85 32.25 0.16 -6.55 16 12 C 0.07 2.46 5.47 32.54 0.18 2.64 16 13 H 0.16 4.46 8.14 -2.39 -0.02 4.45 16 14 O -0.37 -14.40 11.65 -148.98 -1.73 -16.13 16 15 C 0.08 3.30 4.54 32.54 0.15 3.44 16 16 H 0.13 5.26 8.14 -2.39 -0.02 5.24 16 17 C -0.10 -3.00 3.47 -9.88 -0.03 -3.03 16 18 H 0.17 3.62 8.14 -2.39 -0.02 3.60 16 19 C 0.50 18.06 4.91 71.23 0.35 18.41 16 20 O -0.53 -24.80 14.50 21.96 0.32 -24.48 16 21 O -0.51 -14.57 10.22 -43.78 -0.45 -15.01 16 22 C -0.10 -2.66 3.46 -9.88 -0.03 -2.70 16 23 H 0.16 2.99 8.14 -2.38 -0.02 2.97 16 24 C 0.49 14.77 5.06 71.24 0.36 15.13 16 25 O -0.52 -20.47 10.83 29.60 0.32 -20.15 16 26 O -0.50 -10.47 13.42 -51.36 -0.69 -11.16 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.07 3.38 4.62 -2.72 -0.01 3.37 16 29 H 0.03 1.76 7.34 -2.39 -0.02 1.74 16 30 H 0.42 9.53 9.10 -74.06 -0.67 8.86 16 31 H 0.43 5.67 9.10 -74.06 -0.67 5.00 16 Total: -1.00 -81.57 254.32 1.67 -79.90 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.14 Total: 17.81 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 1.76 Total: -2.32 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.27 Total: -57.42 kcal Atomic # 8 Polarization: -84.71 SS G_CDS: -2.23 Total: -86.94 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -81.57 1.67 -79.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025983578.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.175 kcal (2) G-P(sol) polarization free energy of solvation -81.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds