Wall clock time and date at job start Mon Mar 30 2020 07:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47213 * 299.99768 * 3 2 1 6 6 H 1.48497 * 109.47045 * 60.00143 * 3 2 1 7 7 C 1.37878 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99658 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.67183 * 61.75866 * 9 7 2 11 11 C 1.55006 * 110.75041 * 298.54175 * 9 7 2 12 12 C 1.55816 * 102.95484 * 241.40622 * 11 9 7 13 13 H 1.09005 * 115.38657 * 158.92756 * 12 11 9 14 14 O 1.47032 * 101.02311 * 32.41906 * 12 11 9 15 15 C 1.46534 * 99.71354 * 305.85541 * 14 12 11 16 16 H 1.09002 * 116.26075 * 180.02562 * 15 14 12 17 17 C 1.55813 * 101.24530 * 305.86151 * 15 14 12 18 18 H 1.08994 * 110.75008 * 274.09338 * 17 15 14 19 19 C 1.50705 * 110.75078 * 150.74524 * 17 15 14 20 20 O 1.20823 * 119.99754 * 262.76873 * 19 17 15 21 21 O 1.34228 * 120.00094 * 82.76742 * 19 17 15 22 22 C 1.54998 * 102.78872 * 32.41942 * 17 15 14 23 23 H 1.09002 * 110.75067 * 118.32292 * 22 17 15 24 24 C 1.50703 * 110.75178 * 241.67650 * 22 17 15 25 25 O 1.20824 * 120.00001 * 118.54287 * 24 22 17 26 26 O 1.34230 * 119.99966 * 298.54745 * 24 22 17 27 27 H 0.96999 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.74501 * 359.82101 * 11 9 7 29 29 H 1.08996 * 110.74899 * 122.98235 * 11 9 7 30 30 H 0.96701 * 116.99801 * 180.02562 * 21 19 17 31 31 H 0.96693 * 117.00597 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6411 -2.5912 -0.8981 11 6 0.3761 -2.6281 1.2736 12 6 0.9598 -3.8928 1.9719 13 1 0.7522 -3.9753 3.0388 14 8 2.3753 -3.7993 1.5853 15 6 2.2286 -3.7056 0.1303 16 1 3.1518 -3.6228 -0.4432 17 6 1.3665 -4.9683 -0.1701 18 1 1.9992 -5.8471 -0.2945 19 6 0.5071 -4.7506 -1.3888 20 8 -0.6452 -4.4101 -1.2623 21 8 1.0218 -4.9349 -2.6147 22 6 0.4917 -5.0973 1.1029 23 1 -0.5659 -5.0040 0.8558 24 6 0.7637 -6.4011 1.8079 25 8 1.1970 -6.3991 2.9358 26 8 0.5247 -7.5647 1.1828 27 1 -0.4850 0.8400 -0.0004 28 1 0.4877 -1.7498 1.9094 29 1 -0.6702 -2.7811 1.0092 30 1 0.4321 -4.7827 -3.3658 31 1 0.7151 -8.3748 1.6752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025983586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:35 Heat of formation + Delta-G solvation = -210.000206 kcal Electronic energy + Delta-G solvation = -20207.476703 eV Core-core repulsion = 16840.508020 eV Total energy + Delta-G solvation = -3366.968683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33792 -39.75500 -38.75045 -36.02234 -35.76838 -33.18531 -32.03280 -29.88202 -29.58885 -25.64863 -23.87505 -22.50742 -20.76605 -20.23514 -19.10964 -17.98612 -17.72466 -16.93270 -16.84711 -16.34286 -15.41317 -15.15991 -14.91111 -14.50077 -14.01331 -13.37015 -13.32292 -12.60133 -12.40561 -11.97044 -11.63141 -11.42790 -11.30976 -11.14786 -11.05180 -10.87666 -10.72589 -10.50211 -10.31116 -10.11826 -9.99925 -9.65778 -8.93256 -8.91036 -8.45038 -6.06136 -4.10415 2.24142 2.55553 3.00841 3.28434 3.36788 3.38163 3.41269 4.37034 4.44201 4.59637 4.81211 5.23656 5.26325 5.38747 5.45645 5.66204 5.77792 5.82147 6.07720 6.24361 6.48857 6.52585 6.70111 6.78750 6.91241 7.14277 7.48003 7.69482 7.87870 7.96918 8.21344 8.30280 8.90164 9.53474 11.02741 Molecular weight = 256.09amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.007932 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.247250 B = 3529.318827 C = 4044.542665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.026 3.974 10 H 0.043 0.957 11 C -0.113 4.113 12 C 0.077 3.923 13 H 0.131 0.869 14 O -0.359 6.359 15 C 0.078 3.922 16 H 0.134 0.866 17 C -0.104 4.104 18 H 0.109 0.891 19 C 0.502 3.498 20 O -0.502 6.502 21 O -0.515 6.515 22 C -0.106 4.106 23 H 0.137 0.863 24 C 0.491 3.509 25 O -0.505 6.505 26 O -0.518 6.518 27 H 0.261 0.739 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.409 0.591 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 -11.887 -1.538 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.007 3.993 10 H 0.061 0.939 11 C -0.151 4.151 12 C 0.019 3.981 13 H 0.149 0.851 14 O -0.277 6.277 15 C 0.020 3.980 16 H 0.151 0.849 17 C -0.124 4.124 18 H 0.127 0.873 19 C 0.344 3.656 20 O -0.389 6.389 21 O -0.327 6.327 22 C -0.125 4.125 23 H 0.155 0.845 24 C 0.333 3.667 25 O -0.392 6.392 26 O -0.330 6.330 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.267 0.733 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 0.305 -11.366 -0.921 11.407 hybrid contribution -0.122 0.367 -0.304 0.492 sum 0.183 -10.998 -1.225 11.068 Atomic orbital electron populations 1.69996 1.05851 1.26584 1.49893 1.24962 0.94866 0.99150 0.95011 0.86517 0.80219 0.83643 0.77535 1.19665 1.21099 1.21001 1.21003 0.93003 0.89701 1.51171 0.92103 1.20493 0.91910 0.92121 0.94750 0.93900 1.23205 0.98781 0.94445 0.98707 1.24843 0.82148 0.92441 0.98658 0.85139 1.90130 1.23961 1.94101 1.19507 1.24925 0.98603 0.91853 0.82646 0.84893 1.22607 0.96967 1.04207 0.88641 0.87305 1.22610 0.86462 0.72389 0.84138 1.90722 1.19140 1.42404 1.86622 1.84493 1.48941 1.82473 1.16763 1.22923 1.04126 0.89951 0.95467 0.84537 1.23341 0.73186 0.85400 0.84813 1.90703 1.41009 1.87832 1.19664 1.84575 1.80605 1.17090 1.50754 0.92973 0.90005 0.92132 0.73304 0.73592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 12.38 55.43 0.69 -24.32 16 2 C 0.06 1.70 5.12 -17.82 -0.09 1.60 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.66 8.53 -34.44 -0.29 -13.95 16 8 H 0.06 1.62 7.79 -52.48 -0.41 1.21 16 9 C 0.03 0.61 2.11 -89.21 -0.19 0.42 16 10 H 0.04 1.10 5.63 -51.93 -0.29 0.81 16 11 C -0.11 -2.59 5.26 -24.17 -0.13 -2.72 16 12 C 0.08 1.51 4.65 -23.77 -0.11 1.40 16 13 H 0.13 2.39 7.74 -51.93 -0.40 1.98 16 14 O -0.36 -7.68 11.66 -35.23 -0.41 -8.09 16 15 C 0.08 1.56 4.83 -23.72 -0.11 1.44 16 16 H 0.13 2.46 8.14 -51.93 -0.42 2.04 16 17 C -0.10 -1.78 3.09 -89.21 -0.28 -2.05 16 18 H 0.11 1.60 7.76 -51.93 -0.40 1.20 16 19 C 0.50 8.66 5.89 36.01 0.21 8.87 16 20 O -0.50 -9.95 15.31 -18.75 -0.29 -10.24 16 21 O -0.51 -7.22 13.42 -39.25 -0.53 -7.74 16 22 C -0.11 -1.81 2.54 -89.26 -0.23 -2.04 16 23 H 0.14 2.36 6.37 -51.93 -0.33 2.03 16 24 C 0.49 7.63 7.48 36.01 0.27 7.90 16 25 O -0.51 -9.04 16.65 -18.75 -0.31 -9.35 16 26 O -0.52 -6.20 13.41 -39.26 -0.53 -6.73 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.08 2.07 7.35 -51.93 -0.38 1.69 16 29 H 0.06 1.40 7.81 -51.93 -0.41 1.00 16 30 H 0.41 3.94 9.10 45.56 0.41 4.35 16 31 H 0.41 2.86 9.10 45.56 0.41 3.27 16 LS Contribution 268.30 15.07 4.04 4.04 Total: -1.00 -33.08 268.30 -4.65 -37.73 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -1.35 Total: 7.77 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.95 Total: 0.88 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.69 Total: -24.32 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -2.06 Total: -42.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.08 -4.65 -37.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025983586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.267 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds