Wall clock time and date at job start Mon Mar 30 2020 07:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47213 * 299.99768 * 3 2 1 6 6 H 1.48497 * 109.47045 * 60.00143 * 3 2 1 7 7 C 1.37878 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99658 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.67183 * 61.75866 * 9 7 2 11 11 C 1.55006 * 110.75041 * 298.54175 * 9 7 2 12 12 C 1.55816 * 102.95484 * 241.40622 * 11 9 7 13 13 H 1.09005 * 115.38657 * 158.92756 * 12 11 9 14 14 O 1.47032 * 101.02311 * 32.41906 * 12 11 9 15 15 C 1.46534 * 99.71354 * 305.85541 * 14 12 11 16 16 H 1.09002 * 116.26075 * 180.02562 * 15 14 12 17 17 C 1.55813 * 101.24530 * 305.86151 * 15 14 12 18 18 H 1.08994 * 110.75008 * 274.09338 * 17 15 14 19 19 C 1.50705 * 110.75078 * 150.74524 * 17 15 14 20 20 O 1.20823 * 119.99754 * 262.76873 * 19 17 15 21 21 O 1.34228 * 120.00094 * 82.76742 * 19 17 15 22 22 C 1.54998 * 102.78872 * 32.41942 * 17 15 14 23 23 H 1.09002 * 110.75067 * 118.32292 * 22 17 15 24 24 C 1.50703 * 110.75178 * 241.67650 * 22 17 15 25 25 O 1.20824 * 120.00001 * 118.54287 * 24 22 17 26 26 O 1.34230 * 119.99966 * 298.54745 * 24 22 17 27 27 H 0.96999 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.74501 * 359.82101 * 11 9 7 29 29 H 1.08996 * 110.74899 * 122.98235 * 11 9 7 30 30 H 0.96701 * 116.99801 * 180.02562 * 21 19 17 31 31 H 0.96693 * 117.00597 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6411 -2.5912 -0.8981 11 6 0.3761 -2.6281 1.2736 12 6 0.9598 -3.8928 1.9719 13 1 0.7522 -3.9753 3.0388 14 8 2.3753 -3.7993 1.5853 15 6 2.2286 -3.7056 0.1303 16 1 3.1518 -3.6228 -0.4432 17 6 1.3665 -4.9683 -0.1701 18 1 1.9992 -5.8471 -0.2945 19 6 0.5071 -4.7506 -1.3888 20 8 -0.6452 -4.4101 -1.2623 21 8 1.0218 -4.9349 -2.6147 22 6 0.4917 -5.0973 1.1029 23 1 -0.5659 -5.0040 0.8558 24 6 0.7637 -6.4011 1.8079 25 8 1.1970 -6.3991 2.9358 26 8 0.5247 -7.5647 1.1828 27 1 -0.4850 0.8400 -0.0004 28 1 0.4877 -1.7498 1.9094 29 1 -0.6702 -2.7811 1.0092 30 1 0.4321 -4.7827 -3.3658 31 1 0.7151 -8.3748 1.6752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025983586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:34 Heat of formation + Delta-G solvation = -235.673921 kcal Electronic energy + Delta-G solvation = -20208.589998 eV Core-core repulsion = 16840.508020 eV Total energy + Delta-G solvation = -3368.081978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.78952 -40.98886 -40.17129 -37.15057 -37.05020 -35.18024 -33.52684 -31.73956 -31.14934 -27.41243 -25.50200 -23.89970 -22.30301 -21.75763 -20.62751 -19.27767 -18.98230 -18.64565 -18.18295 -17.87669 -16.96723 -16.65006 -16.34032 -16.19303 -15.52979 -14.95663 -14.74447 -14.22388 -13.80548 -13.44749 -13.22391 -13.13997 -12.85178 -12.70118 -12.55023 -12.46984 -12.42508 -12.24894 -11.84874 -11.73731 -11.59161 -11.27863 -10.86925 -10.65113 -10.50727 -8.13608 -6.23587 1.01849 1.20811 1.40378 1.43287 1.54160 1.81749 2.18936 2.42904 2.92510 3.13192 3.18332 3.36299 3.80038 3.99339 4.13622 4.31076 4.34199 4.42270 4.51799 4.58941 4.89841 4.94047 5.14989 5.34241 5.52487 5.57019 5.63056 5.75936 5.85942 6.29656 6.83565 6.95171 7.01656 7.43353 8.94896 Molecular weight = 256.09amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.007932 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.247250 B = 3529.318827 C = 4044.542665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.017 3.983 10 H 0.023 0.977 11 C -0.106 4.106 12 C 0.082 3.918 13 H 0.142 0.858 14 O -0.374 6.374 15 C 0.081 3.919 16 H 0.149 0.851 17 C -0.097 4.097 18 H 0.141 0.859 19 C 0.505 3.495 20 O -0.534 6.534 21 O -0.504 6.504 22 C -0.102 4.102 23 H 0.135 0.865 24 C 0.506 3.494 25 O -0.530 6.530 26 O -0.504 6.504 27 H 0.260 0.740 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.429 0.571 31 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -13.374 -2.001 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.001 4.001 10 H 0.041 0.959 11 C -0.144 4.144 12 C 0.025 3.975 13 H 0.160 0.840 14 O -0.293 6.293 15 C 0.023 3.977 16 H 0.167 0.833 17 C -0.116 4.116 18 H 0.159 0.841 19 C 0.348 3.652 20 O -0.423 6.423 21 O -0.318 6.318 22 C -0.121 4.121 23 H 0.153 0.847 24 C 0.349 3.651 25 O -0.420 6.420 26 O -0.319 6.319 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.290 0.710 31 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 1.269 -12.894 -1.419 13.034 hybrid contribution -0.435 0.786 -0.231 0.927 sum 0.834 -12.109 -1.650 12.249 Atomic orbital electron populations 1.70113 1.07161 1.27188 1.51019 1.25707 0.95614 1.02356 0.94895 0.85574 0.79256 0.79822 0.77427 1.18955 1.20634 1.21012 1.21382 0.93133 0.91286 1.50569 0.92390 1.20438 0.92604 0.92956 0.94111 0.95893 1.22944 0.98213 0.95021 0.98250 1.24772 0.81232 0.92103 0.99440 0.84038 1.90109 1.24725 1.94184 1.20253 1.24882 0.98804 0.91602 0.82365 0.83345 1.22545 0.96722 1.03753 0.88590 0.84095 1.22626 0.85905 0.71645 0.85044 1.90719 1.20565 1.43837 1.87206 1.84438 1.49136 1.81688 1.16497 1.22680 1.04040 0.90370 0.95013 0.84741 1.22725 0.72630 0.85752 0.84030 1.90711 1.42343 1.88275 1.20627 1.84493 1.79758 1.17164 1.50460 0.93099 0.93407 0.93343 0.70972 0.70580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.97 12.38 21.45 0.27 -52.71 16 2 C 0.01 0.74 5.12 84.66 0.43 1.17 16 3 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.53 -28.42 8.53 25.60 0.22 -28.20 16 8 H 0.06 3.08 7.79 -2.91 -0.02 3.06 16 9 C 0.02 0.84 2.11 -9.88 -0.02 0.82 16 10 H 0.02 1.21 5.63 -2.39 -0.01 1.19 16 11 C -0.11 -4.98 5.26 32.25 0.17 -4.81 16 12 C 0.08 3.19 4.65 32.51 0.15 3.34 16 13 H 0.14 5.13 7.74 -2.38 -0.02 5.11 16 14 O -0.37 -15.65 11.66 -148.98 -1.74 -17.39 16 15 C 0.08 3.15 4.83 32.54 0.16 3.31 16 16 H 0.15 5.23 8.14 -2.39 -0.02 5.21 16 17 C -0.10 -3.08 3.09 -9.88 -0.03 -3.11 16 18 H 0.14 3.60 7.76 -2.39 -0.02 3.58 16 19 C 0.50 16.57 5.89 71.24 0.42 16.99 16 20 O -0.53 -20.88 15.31 21.97 0.34 -20.55 16 21 O -0.50 -12.88 13.42 -51.40 -0.69 -13.57 16 22 C -0.10 -3.33 2.54 -9.91 -0.03 -3.36 16 23 H 0.14 4.52 6.37 -2.39 -0.02 4.51 16 24 C 0.51 14.36 7.48 71.24 0.53 14.89 16 25 O -0.53 -17.75 16.65 21.97 0.37 -17.38 16 26 O -0.50 -10.13 13.41 -51.42 -0.69 -10.82 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.05 2.52 7.35 -2.38 -0.02 2.50 16 29 H 0.05 2.33 7.81 -2.39 -0.02 2.31 16 30 H 0.43 7.25 9.10 -74.06 -0.67 6.58 16 31 H 0.43 4.23 9.10 -74.06 -0.67 3.55 16 Total: -1.00 -71.33 268.30 1.74 -69.59 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -0.14 Total: 16.16 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 2.01 Total: 1.04 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.27 Total: -52.71 kcal Atomic # 8 Polarization: -77.28 SS G_CDS: -2.41 Total: -79.70 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -71.33 1.74 -69.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025983586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.088 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds