Wall clock time and date at job start Mon Mar 30 2020 07:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48500 * 109.47164 * 270.00171 * 3 2 1 5 5 H 1.48501 * 109.46979 * 30.00342 * 3 2 1 6 6 H 1.48496 * 109.47203 * 150.00367 * 3 2 1 7 7 C 1.37877 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99672 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00030 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.48019 * 59.97218 * 9 7 2 11 11 O 1.42901 * 109.47971 * 299.94298 * 9 7 2 12 12 C 1.43035 * 114.13326 * 301.17291 * 11 9 7 13 13 H 1.09000 * 109.46297 * 58.81334 * 12 11 9 14 14 C 1.53004 * 109.56842 * 178.88776 * 12 11 9 15 15 O 1.42893 * 109.47224 * 294.91072 * 14 12 11 16 16 C 1.53086 * 109.34874 * 298.88660 * 12 11 9 17 17 H 1.08994 * 109.52821 * 177.51332 * 16 12 11 18 18 O 1.42903 * 109.52177 * 297.64059 * 16 12 11 19 19 C 1.53180 * 109.21682 * 57.57018 * 16 12 11 20 20 H 1.08992 * 109.54551 * 183.12519 * 19 16 12 21 21 O 1.42901 * 109.53995 * 62.86008 * 19 16 12 22 22 C 1.53091 * 109.48272 * 179.97438 * 9 7 2 23 23 H 1.09000 * 109.57361 * 182.30642 * 22 9 7 24 24 O 1.42900 * 109.52165 * 302.47204 * 22 9 7 25 25 H 0.96999 * 120.00381 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46813 * 54.91565 * 14 12 11 27 27 H 1.09005 * 109.46994 * 174.91151 * 14 12 11 28 28 H 0.96708 * 114.00034 * 180.02562 * 15 14 12 29 29 H 0.96700 * 114.00311 * 179.87330 * 18 16 12 30 30 H 0.96703 * 114.00152 * 180.02562 * 21 19 16 31 31 H 0.96705 * 113.99437 * 299.67889 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8754 -0.6799 0.8885 11 8 3.9876 -0.5212 -1.1685 12 6 3.5452 -1.1011 -2.3990 13 1 2.4556 -1.1000 -2.4299 14 6 4.0900 -0.2870 -3.5743 15 8 3.5204 1.0233 -3.5508 16 6 4.0571 -2.5407 -2.4942 17 1 3.6849 -2.9999 -3.4099 18 8 5.4860 -2.5395 -2.5071 19 6 3.5569 -3.3348 -1.2835 20 1 3.9637 -4.3454 -1.3169 21 8 2.1292 -3.3914 -1.3057 22 6 4.0222 -2.6372 -0.0010 23 1 5.1114 -2.6391 0.0399 24 8 3.5002 -3.3283 1.1356 25 1 -0.4851 0.8400 0.0004 26 1 5.1745 -0.2133 -3.4934 27 1 3.8282 -0.7803 -4.5104 28 1 3.8215 1.5960 -4.2696 29 1 5.8796 -3.4210 -2.5642 30 1 1.7434 -3.8801 -0.5659 31 1 3.7558 -2.9399 1.9836 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026829092.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:14 Heat of formation + Delta-G solvation = -221.622458 kcal Electronic energy + Delta-G solvation = -18731.520113 eV Core-core repulsion = 15593.188254 eV Total energy + Delta-G solvation = -3138.331859 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.63240 -36.64501 -36.02659 -35.29278 -34.84822 -32.20031 -30.21779 -29.47918 -26.81262 -24.58850 -22.17899 -21.34818 -19.35615 -17.29286 -16.96725 -16.88725 -16.38663 -16.15677 -15.62792 -14.72598 -14.37414 -13.85158 -13.71692 -13.48667 -13.06497 -12.57914 -12.31189 -12.11802 -11.97879 -11.42574 -11.00476 -10.72967 -10.38098 -10.29147 -9.95144 -9.73574 -9.59069 -9.51496 -9.26002 -8.43776 -8.24496 -8.00426 -5.90904 -3.98041 3.59375 3.67096 3.84049 4.25228 4.55091 4.65894 4.73804 4.94569 4.97911 5.41108 5.48160 5.54984 5.71140 5.77486 5.85857 5.91876 5.98910 6.08836 6.36815 6.48563 6.95087 7.18263 7.68695 7.78804 8.10429 8.14984 8.35945 8.42575 8.72403 9.23165 9.71410 11.17446 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.016727 C = 0.011667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.132546 B = 1673.568651 C = 2399.452908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.886 3.114 4 H -0.253 1.253 5 H -0.311 1.311 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.101 0.899 9 C 0.147 3.853 10 H 0.061 0.939 11 O -0.378 6.378 12 C 0.114 3.886 13 H 0.103 0.897 14 C 0.086 3.914 15 O -0.555 6.555 16 C 0.090 3.910 17 H 0.066 0.934 18 O -0.549 6.549 19 C 0.100 3.900 20 H 0.041 0.959 21 O -0.528 6.528 22 C 0.061 3.939 23 H 0.046 0.954 24 O -0.561 6.561 25 H 0.261 0.739 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.365 0.635 29 H 0.368 0.632 30 H 0.383 0.617 31 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.564 -5.332 -5.145 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.715 3.285 4 H -0.177 1.177 5 H -0.240 1.240 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.119 0.881 9 C 0.091 3.909 10 H 0.078 0.922 11 O -0.298 6.298 12 C 0.056 3.944 13 H 0.121 0.879 14 C 0.008 3.992 15 O -0.359 6.359 16 C 0.030 3.970 17 H 0.084 0.916 18 O -0.354 6.354 19 C 0.040 3.960 20 H 0.059 0.941 21 O -0.335 6.335 22 C 0.001 3.999 23 H 0.064 0.936 24 O -0.366 6.366 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.210 0.790 29 H 0.213 0.787 30 H 0.232 0.768 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.966 -4.701 -5.579 11.559 hybrid contribution 0.860 0.253 0.475 1.014 sum 9.826 -4.448 -5.104 11.933 Atomic orbital electron populations 1.69946 1.06477 1.26889 1.49912 1.24984 0.94616 0.99357 0.93110 0.86664 0.78818 0.82896 0.80084 1.17740 1.23996 1.20131 1.21595 0.88499 0.95621 1.51009 0.88108 1.20943 0.96453 0.87922 0.85560 0.92170 1.87894 1.73691 1.55054 1.13114 1.21736 1.00430 0.87068 0.85200 0.87913 1.22135 0.97150 0.83747 0.96170 1.86775 1.71099 1.24271 1.53717 1.22330 0.80366 0.98413 0.95845 0.91611 1.86674 1.18882 1.32809 1.97005 1.22092 0.84202 0.95890 0.93847 0.94109 1.86591 1.16578 1.78574 1.51741 1.22847 0.95361 0.95181 0.86470 0.93565 1.86282 1.78158 1.55972 1.16230 0.92969 0.93021 0.93601 0.78974 0.78651 0.76819 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.84 13.96 55.43 0.77 -27.07 16 2 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.89 24.02 26.18 -169.99 -4.45 19.57 16 4 H -0.25 -7.00 6.57 56.52 0.37 -6.63 16 5 H -0.31 -8.45 7.11 56.52 0.40 -8.04 16 6 H -0.28 -7.40 6.54 56.52 0.37 -7.03 16 7 C -0.53 -14.61 6.35 -34.44 -0.22 -14.83 16 8 H 0.10 2.92 5.14 -52.49 -0.27 2.65 16 9 C 0.15 3.55 2.38 -27.84 -0.07 3.49 16 10 H 0.06 1.49 7.20 -51.93 -0.37 1.12 16 11 O -0.38 -9.27 7.85 -51.42 -0.40 -9.68 16 12 C 0.11 2.48 2.31 -26.69 -0.06 2.42 16 13 H 0.10 2.65 6.77 -51.93 -0.35 2.30 16 14 C 0.09 1.59 6.47 37.16 0.24 1.83 16 15 O -0.56 -11.07 13.09 -39.73 -0.52 -11.59 16 16 C 0.09 1.60 3.00 -26.59 -0.08 1.52 16 17 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 18 O -0.55 -8.53 12.07 -42.72 -0.52 -9.04 16 19 C 0.10 1.86 3.25 -26.52 -0.09 1.77 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 O -0.53 -11.07 9.80 -46.77 -0.46 -11.53 16 22 C 0.06 1.21 3.10 -26.57 -0.08 1.13 16 23 H 0.05 0.87 7.83 -51.93 -0.41 0.46 16 24 O -0.56 -10.48 12.22 -46.77 -0.57 -11.05 16 25 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 26 H 0.05 0.92 7.79 -51.93 -0.40 0.51 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.37 4.96 9.12 45.56 0.42 5.38 16 29 H 0.37 3.82 9.08 45.56 0.41 4.23 16 30 H 0.38 7.47 7.80 45.56 0.36 7.82 16 31 H 0.38 5.80 9.09 45.56 0.41 6.21 16 LS Contribution 250.27 15.07 3.77 3.77 Total: -1.00 -35.88 250.27 -3.50 -39.38 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.67 Total: 17.56 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.45 Total: -0.32 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.47 Total: -52.89 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.45 Total: 19.57 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -35.88 -3.50 -39.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026829092.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.242 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds