Wall clock time and date at job start Mon Mar 30 2020 07:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48500 * 109.47164 * 270.00171 * 3 2 1 5 5 H 1.48501 * 109.46979 * 30.00342 * 3 2 1 6 6 H 1.48496 * 109.47203 * 150.00367 * 3 2 1 7 7 C 1.37877 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99672 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00030 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.48019 * 59.97218 * 9 7 2 11 11 O 1.42901 * 109.47971 * 299.94298 * 9 7 2 12 12 C 1.43035 * 114.13326 * 301.17291 * 11 9 7 13 13 H 1.09000 * 109.46297 * 58.81334 * 12 11 9 14 14 C 1.53004 * 109.56842 * 178.88776 * 12 11 9 15 15 O 1.42893 * 109.47224 * 294.91072 * 14 12 11 16 16 C 1.53086 * 109.34874 * 298.88660 * 12 11 9 17 17 H 1.08994 * 109.52821 * 177.51332 * 16 12 11 18 18 O 1.42903 * 109.52177 * 297.64059 * 16 12 11 19 19 C 1.53180 * 109.21682 * 57.57018 * 16 12 11 20 20 H 1.08992 * 109.54551 * 183.12519 * 19 16 12 21 21 O 1.42901 * 109.53995 * 62.86008 * 19 16 12 22 22 C 1.53091 * 109.48272 * 179.97438 * 9 7 2 23 23 H 1.09000 * 109.57361 * 182.30642 * 22 9 7 24 24 O 1.42900 * 109.52165 * 302.47204 * 22 9 7 25 25 H 0.96999 * 120.00381 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46813 * 54.91565 * 14 12 11 27 27 H 1.09005 * 109.46994 * 174.91151 * 14 12 11 28 28 H 0.96708 * 114.00034 * 180.02562 * 15 14 12 29 29 H 0.96700 * 114.00311 * 179.87330 * 18 16 12 30 30 H 0.96703 * 114.00152 * 180.02562 * 21 19 16 31 31 H 0.96705 * 113.99437 * 299.67889 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8754 -0.6799 0.8885 11 8 3.9876 -0.5212 -1.1685 12 6 3.5452 -1.1011 -2.3990 13 1 2.4556 -1.1000 -2.4299 14 6 4.0900 -0.2870 -3.5743 15 8 3.5204 1.0233 -3.5508 16 6 4.0571 -2.5407 -2.4942 17 1 3.6849 -2.9999 -3.4099 18 8 5.4860 -2.5395 -2.5071 19 6 3.5569 -3.3348 -1.2835 20 1 3.9637 -4.3454 -1.3169 21 8 2.1292 -3.3914 -1.3057 22 6 4.0222 -2.6372 -0.0010 23 1 5.1114 -2.6391 0.0399 24 8 3.5002 -3.3283 1.1356 25 1 -0.4851 0.8400 0.0004 26 1 5.1745 -0.2133 -3.4934 27 1 3.8282 -0.7803 -4.5104 28 1 3.8215 1.5960 -4.2696 29 1 5.8796 -3.4210 -2.5642 30 1 1.7434 -3.8801 -0.5659 31 1 3.7558 -2.9399 1.9836 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026829092.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:14 Heat of formation + Delta-G solvation = -258.636987 kcal Electronic energy + Delta-G solvation = -18733.125184 eV Core-core repulsion = 15593.188254 eV Total energy + Delta-G solvation = -3139.936929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.21552 -38.13379 -37.41275 -36.94475 -36.34391 -34.37688 -31.82309 -31.07306 -28.67289 -26.21387 -23.92233 -22.94791 -20.94278 -19.20712 -18.42758 -18.38983 -17.86186 -17.74535 -17.29522 -16.49053 -16.13418 -15.61311 -15.33206 -15.00590 -14.57456 -14.41542 -14.15523 -13.76981 -13.40050 -13.12613 -12.77626 -12.63075 -12.31744 -12.01644 -11.69748 -11.53569 -11.14989 -11.01633 -10.79079 -10.65451 -10.07413 -9.78656 -8.17648 -6.23145 1.38577 1.49712 1.63202 2.48564 2.80527 3.07534 3.25928 3.31894 3.50921 3.61491 4.00825 4.09696 4.28402 4.32020 4.36326 4.48984 4.51309 4.59367 4.81160 4.95997 5.25257 5.34201 5.60913 6.25040 6.63854 6.78917 6.90718 6.98803 6.99492 7.01153 7.47662 8.93667 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.016727 C = 0.011667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.132546 B = 1673.568651 C = 2399.452908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.031 3.969 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.315 1.315 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.084 0.916 9 C 0.141 3.859 10 H 0.051 0.949 11 O -0.393 6.393 12 C 0.102 3.898 13 H 0.053 0.947 14 C 0.089 3.911 15 O -0.590 6.590 16 C 0.103 3.897 17 H 0.090 0.910 18 O -0.552 6.552 19 C 0.092 3.908 20 H 0.080 0.920 21 O -0.551 6.551 22 C 0.069 3.931 23 H 0.067 0.933 24 O -0.566 6.566 25 H 0.258 0.742 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.390 0.610 29 H 0.395 0.605 30 H 0.385 0.615 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 -6.458 -5.997 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.244 1.244 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.102 0.898 9 C 0.085 3.915 10 H 0.068 0.932 11 O -0.313 6.313 12 C 0.043 3.957 13 H 0.071 0.929 14 C 0.011 3.989 15 O -0.398 6.398 16 C 0.043 3.957 17 H 0.108 0.892 18 O -0.360 6.360 19 C 0.032 3.968 20 H 0.097 0.903 21 O -0.358 6.358 22 C 0.009 3.991 23 H 0.085 0.915 24 O -0.373 6.373 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.239 0.761 29 H 0.245 0.755 30 H 0.234 0.766 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.305 -5.839 -6.435 14.259 hybrid contribution 0.220 0.533 0.707 0.913 sum 11.525 -5.306 -5.728 13.921 Atomic orbital electron populations 1.70049 1.07708 1.27102 1.53276 1.25587 0.95029 1.01971 0.94157 0.85873 0.77927 0.80460 0.79212 1.18810 1.24406 1.19587 1.21864 0.90630 0.94378 1.47598 0.89814 1.20946 0.94071 0.91032 0.85501 0.93162 1.87815 1.73411 1.56097 1.14012 1.21892 0.98113 0.90508 0.85137 0.92861 1.22201 0.97398 0.83188 0.96095 1.86703 1.71956 1.25485 1.55656 1.22021 0.81748 0.95380 0.96560 0.89228 1.86610 1.17113 1.35319 1.96941 1.22408 0.83028 0.97895 0.93464 0.90256 1.86566 1.18421 1.78934 1.51891 1.22728 0.96297 0.92386 0.87643 0.91486 1.86270 1.78390 1.55781 1.16855 0.93318 0.91878 0.90209 0.76062 0.75528 0.76594 0.76110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.03 1.84 5.47 84.65 0.46 2.31 16 3 Si 0.94 50.61 26.18 68.60 1.80 52.41 16 4 H -0.26 -14.54 6.57 99.48 0.65 -13.89 16 5 H -0.31 -16.99 7.11 99.48 0.71 -16.28 16 6 H -0.27 -14.20 6.54 99.48 0.65 -13.55 16 7 C -0.51 -28.14 6.35 25.60 0.16 -27.97 16 8 H 0.08 4.92 5.14 -2.91 -0.01 4.90 16 9 C 0.14 6.65 2.38 29.88 0.07 6.72 16 10 H 0.05 2.45 7.20 -2.39 -0.02 2.43 16 11 O -0.39 -18.78 7.85 -133.50 -1.05 -19.82 16 12 C 0.10 4.27 2.31 30.62 0.07 4.34 16 13 H 0.05 2.77 6.77 -2.39 -0.02 2.75 16 14 C 0.09 3.06 6.47 71.98 0.47 3.52 16 15 O -0.59 -22.72 13.09 -144.68 -1.89 -24.62 16 16 C 0.10 3.30 3.00 30.68 0.09 3.40 16 17 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 18 O -0.55 -14.53 12.07 -141.82 -1.71 -16.24 16 19 C 0.09 3.12 3.25 30.73 0.10 3.22 16 20 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 21 O -0.55 -22.50 9.80 -137.95 -1.35 -23.85 16 22 C 0.07 2.56 3.10 30.70 0.10 2.66 16 23 H 0.07 2.25 7.83 -2.39 -0.02 2.23 16 24 O -0.57 -19.84 12.22 -137.95 -1.69 -21.52 16 25 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 26 H 0.06 2.03 7.79 -2.39 -0.02 2.01 16 27 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.39 9.89 9.12 -74.05 -0.68 9.21 16 29 H 0.39 5.98 9.08 -74.06 -0.67 5.30 16 30 H 0.38 14.81 7.80 -74.06 -0.58 14.23 16 31 H 0.39 11.18 9.09 -74.05 -0.67 10.51 16 Total: -1.00 -78.07 250.27 -5.58 -83.65 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -1.50 Total: 31.75 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 1.52 Total: -1.80 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.30 Total: -59.95 kcal Atomic # 8 Polarization: -98.36 SS G_CDS: -7.69 Total: -106.05 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.80 Total: 52.41 kcal Total: -78.07 -5.58 -83.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026829092.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.984 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds