Wall clock time and date at job start Mon Mar 30 2020 07:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86810 * 119.99996 * 2 1 4 4 H 1.48492 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47041 * 299.99973 * 3 2 1 6 6 H 1.48505 * 109.46723 * 60.00030 * 3 2 1 7 7 C 1.37870 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99652 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47955 * 59.97907 * 9 7 2 11 11 O 1.42899 * 109.48028 * 299.94095 * 9 7 2 12 12 C 1.42908 * 114.09482 * 178.85607 * 11 9 7 13 13 H 1.08993 * 109.48601 * 301.17873 * 12 11 9 14 14 C 1.53002 * 109.47907 * 181.13983 * 12 11 9 15 15 O 1.42907 * 109.46847 * 65.06158 * 14 12 11 16 16 C 1.53096 * 109.41214 * 61.16277 * 12 11 9 17 17 H 1.08998 * 109.52422 * 62.29763 * 16 12 11 18 18 O 1.42907 * 109.52001 * 182.41984 * 16 12 11 19 19 C 1.53173 * 109.16177 * 302.38665 * 16 12 11 20 20 H 1.09000 * 109.54661 * 297.11636 * 19 16 12 21 21 O 1.42907 * 109.54168 * 176.85006 * 19 16 12 22 22 C 1.53100 * 109.47782 * 180.02562 * 9 7 2 23 23 H 1.09001 * 109.52270 * 297.49357 * 22 9 7 24 24 O 1.42897 * 109.52324 * 57.68791 * 22 9 7 25 25 H 0.97002 * 120.00312 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47011 * 185.05745 * 14 12 11 27 27 H 1.08998 * 109.47382 * 305.06438 * 14 12 11 28 28 H 0.96693 * 113.99765 * 179.97438 * 15 14 12 29 29 H 0.96694 * 113.99506 * 179.97438 * 18 16 12 30 30 H 0.96699 * 113.99489 * 180.02562 * 21 19 16 31 31 H 0.96700 * 113.99916 * 299.68322 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6236 -2.5566 -0.8901 11 8 0.4309 -2.5759 1.1672 12 6 -0.3505 -3.7693 1.2539 13 1 -0.9989 -3.8436 0.3810 14 6 -1.2048 -3.7287 2.5225 15 8 -2.1529 -2.6639 2.4244 16 6 0.5799 -4.9841 1.3037 17 1 1.2006 -4.9311 2.1980 18 8 -0.1995 -6.1815 1.3336 19 6 1.4734 -4.9844 0.0596 20 1 0.8560 -5.0873 -0.8328 21 8 2.3953 -6.0738 0.1334 22 6 2.2457 -3.6629 -0.0005 23 1 2.8429 -3.6316 -0.9119 24 8 3.1033 -3.5581 1.1377 25 1 -0.4851 0.8400 0.0004 26 1 -1.7325 -4.6757 2.6356 27 1 -0.5628 -3.5648 3.3879 28 1 -2.7301 -2.5789 3.1955 29 1 0.3264 -6.9923 1.3654 30 1 2.9938 -6.1345 -0.6237 31 1 3.6239 -2.7437 1.1643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026829096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:15 Heat of formation + Delta-G solvation = -239.626491 kcal Electronic energy + Delta-G solvation = -18137.589290 eV Core-core repulsion = 14998.476718 eV Total energy + Delta-G solvation = -3139.112572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.40863 -36.55070 -36.25240 -35.38625 -34.52756 -32.66370 -29.99304 -29.64676 -26.70300 -24.51140 -22.20127 -21.07051 -19.67889 -17.54544 -17.11525 -16.91541 -16.57533 -15.83886 -15.17654 -14.67051 -14.51849 -14.26888 -14.00955 -13.23408 -13.04946 -12.77885 -12.62500 -11.99146 -11.72156 -11.39680 -11.00680 -10.84875 -10.70256 -10.32287 -10.22539 -9.84326 -9.68471 -9.44864 -9.10997 -8.98481 -8.62981 -7.94879 -6.10248 -4.28054 3.24439 3.32775 3.34566 4.20609 4.31456 4.45136 4.77056 5.03579 5.11727 5.19256 5.45921 5.48923 5.72495 5.81211 5.90756 6.05162 6.12976 6.21550 6.31798 6.54248 6.63139 7.12585 7.72961 7.80885 7.91715 8.00238 8.23329 8.43503 8.60393 8.97927 9.43744 10.96113 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.010815 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.199381 B = 2588.492981 C = 3438.682826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.083 3.917 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.190 3.810 10 H 0.022 0.978 11 O -0.325 6.325 12 C 0.096 3.904 13 H 0.055 0.945 14 C 0.096 3.904 15 O -0.553 6.553 16 C 0.095 3.905 17 H 0.074 0.926 18 O -0.567 6.567 19 C 0.080 3.920 20 H 0.069 0.931 21 O -0.565 6.565 22 C 0.052 3.948 23 H 0.051 0.949 24 O -0.557 6.557 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.366 0.634 29 H 0.379 0.621 30 H 0.376 0.624 31 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -8.265 1.395 8.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.134 3.866 10 H 0.039 0.961 11 O -0.243 6.243 12 C 0.036 3.964 13 H 0.073 0.927 14 C 0.018 3.982 15 O -0.356 6.356 16 C 0.036 3.964 17 H 0.092 0.908 18 O -0.373 6.373 19 C 0.021 3.979 20 H 0.087 0.913 21 O -0.370 6.370 22 C -0.008 4.008 23 H 0.069 0.931 24 O -0.364 6.364 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.211 0.789 29 H 0.226 0.774 30 H 0.223 0.777 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.095 -8.174 1.628 8.335 hybrid contribution 1.224 0.850 -0.388 1.540 sum 1.319 -7.324 1.239 7.544 Atomic orbital electron populations 1.70063 1.05972 1.26828 1.44808 1.25058 0.94801 0.99383 0.93364 0.86515 0.80064 0.83476 0.77757 1.19588 1.20847 1.20692 1.20729 0.92343 0.89344 1.55239 0.91693 1.20405 0.87667 0.92626 0.85932 0.96071 1.88529 1.57182 1.33347 1.45266 1.21631 0.91561 0.85591 0.97647 0.92706 1.21994 0.90224 0.89112 0.96872 1.86709 1.50328 1.53949 1.44615 1.22463 0.91615 0.85659 0.96673 0.90845 1.86390 1.37525 1.16071 1.97291 1.22743 0.90330 0.85660 0.99131 0.91347 1.86376 1.51079 1.50403 1.49145 1.23238 0.93259 0.95690 0.88651 0.93123 1.86298 1.59036 1.45247 1.45800 0.92643 0.92820 0.93703 0.78888 0.77418 0.77729 0.77183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.77 12.84 55.43 0.71 -24.06 16 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.54 -14.44 8.20 -34.44 -0.28 -14.72 16 8 H 0.07 1.63 6.79 -52.49 -0.36 1.27 16 9 C 0.19 4.80 2.29 -27.83 -0.06 4.74 16 10 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 11 O -0.32 -8.56 9.33 -51.64 -0.48 -9.04 16 12 C 0.10 2.12 2.65 -26.68 -0.07 2.05 16 13 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 14 C 0.10 1.87 6.65 37.16 0.25 2.12 16 15 O -0.55 -11.27 13.63 -40.00 -0.55 -11.81 16 16 C 0.10 1.85 2.62 -26.59 -0.07 1.78 16 17 H 0.07 1.52 7.83 -51.93 -0.41 1.12 16 18 O -0.57 -9.64 12.68 -41.42 -0.53 -10.16 16 19 C 0.08 1.49 3.01 -26.55 -0.08 1.41 16 20 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 21 O -0.56 -9.12 12.79 -55.07 -0.70 -9.83 16 22 C 0.05 1.07 2.99 -26.59 -0.08 0.99 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 O -0.56 -11.76 12.53 -55.77 -0.70 -12.46 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.05 0.92 7.62 -51.93 -0.40 0.52 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.37 5.16 9.12 45.56 0.42 5.57 16 29 H 0.38 5.13 8.72 45.56 0.40 5.53 16 30 H 0.38 4.53 9.09 45.56 0.41 4.94 16 31 H 0.38 7.45 7.50 45.56 0.34 7.79 16 LS Contribution 264.17 15.07 3.98 3.98 Total: -1.00 -33.87 264.17 -4.62 -38.48 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.84 Total: 18.61 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.50 Total: 0.56 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.71 Total: -24.06 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -2.96 Total: -53.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.87 -4.62 -38.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026829096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.143 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds