Wall clock time and date at job start Mon Mar 30 2020 07:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.48693 * 59.97461 * 9 7 2 11 11 O 1.42910 * 109.48050 * 299.93826 * 9 7 2 12 12 C 1.42907 * 114.09310 * 301.17917 * 11 9 7 13 13 H 1.08999 * 109.49152 * 58.83304 * 12 11 9 14 14 C 1.53008 * 109.47491 * 178.85868 * 12 11 9 15 15 O 1.42900 * 109.46847 * 294.94391 * 14 12 11 16 16 C 1.53088 * 109.41864 * 298.83686 * 12 11 9 17 17 H 1.08994 * 109.52476 * 177.51764 * 16 12 11 18 18 O 1.42896 * 109.52561 * 297.70951 * 16 12 11 19 19 C 1.53181 * 109.16014 * 57.61277 * 16 12 11 20 20 H 1.08999 * 109.54658 * 183.14986 * 19 16 12 21 21 O 1.42904 * 109.54122 * 62.88585 * 19 16 12 22 22 C 1.53100 * 109.47731 * 180.02562 * 9 7 2 23 23 H 1.09004 * 109.51570 * 302.39933 * 22 9 7 24 24 O 1.42898 * 109.52020 * 182.27873 * 22 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47267 * 54.94117 * 14 12 11 27 27 H 1.08996 * 109.46851 * 174.94613 * 14 12 11 28 28 H 0.96704 * 113.99602 * 180.02562 * 15 14 12 29 29 H 0.96699 * 114.00402 * 179.68204 * 18 16 12 30 30 H 0.96700 * 113.99342 * 180.44150 * 21 19 16 31 31 H 0.96700 * 114.00300 * 59.99768 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8748 -0.6805 0.8902 11 8 3.9885 -0.5209 -1.1668 12 6 3.5468 -1.1004 -2.3962 13 1 2.4573 -1.0991 -2.4281 14 6 4.0927 -0.2845 -3.5699 15 8 3.5231 1.0258 -3.5448 16 6 4.0588 -2.5399 -2.4932 17 1 3.6864 -2.9980 -3.4094 18 8 5.4877 -2.5388 -2.5052 19 6 3.5577 -3.3344 -1.2833 20 1 3.9644 -4.3451 -1.3168 21 8 2.1299 -3.3908 -1.3066 22 6 4.0221 -2.6374 -0.0014 23 1 3.6242 -3.1653 0.8654 24 8 5.4500 -2.6389 0.0527 25 1 -0.4850 0.8401 0.0004 26 1 5.1771 -0.2109 -3.4881 27 1 3.8315 -0.7764 -4.5068 28 1 3.8248 1.5996 -4.2624 29 1 5.8813 -3.4203 -2.5604 30 1 1.7434 -3.8745 -0.5637 31 1 5.8143 -2.2086 0.8384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026829101.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:17 Heat of formation + Delta-G solvation = -217.060467 kcal Electronic energy + Delta-G solvation = -18816.865118 eV Core-core repulsion = 15678.731082 eV Total energy + Delta-G solvation = -3138.134036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.58021 -36.45181 -35.73404 -35.32692 -34.99140 -32.26729 -30.12556 -29.40253 -26.80416 -24.50774 -22.13733 -21.32282 -19.31918 -17.29320 -16.91362 -16.57072 -16.39698 -16.08018 -15.34761 -15.11825 -14.35175 -13.92682 -13.51928 -13.20082 -12.92553 -12.60526 -12.45412 -12.05817 -11.79141 -11.42520 -10.97017 -10.74484 -10.49580 -10.16791 -9.90279 -9.63854 -9.51660 -9.44272 -9.06657 -8.50146 -8.35552 -7.74914 -5.97916 -4.06469 3.51382 3.63378 3.95008 4.39801 4.65200 4.67749 4.83690 4.95369 5.11172 5.36135 5.49420 5.58761 5.71256 5.84854 5.95979 5.99541 6.07576 6.15553 6.45925 6.51539 7.03086 7.18518 7.63135 8.06248 8.14150 8.18097 8.29823 8.34865 8.74279 9.07003 9.65640 11.10532 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.015256 C = 0.012253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.960219 B = 1834.929334 C = 2284.675048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.088 3.912 3 Si 0.859 3.141 4 H -0.295 1.295 5 H -0.210 1.210 6 H -0.296 1.296 7 C -0.548 4.548 8 H 0.094 0.906 9 C 0.153 3.847 10 H 0.057 0.943 11 O -0.364 6.364 12 C 0.114 3.886 13 H 0.097 0.903 14 C 0.088 3.912 15 O -0.559 6.559 16 C 0.095 3.905 17 H 0.054 0.946 18 O -0.531 6.531 19 C 0.097 3.903 20 H 0.043 0.957 21 O -0.524 6.524 22 C 0.058 3.942 23 H 0.050 0.950 24 O -0.556 6.556 25 H 0.262 0.738 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.366 0.634 29 H 0.363 0.637 30 H 0.376 0.624 31 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -5.508 -4.448 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.223 1.223 5 H -0.132 1.132 6 H -0.223 1.223 7 C -0.585 4.585 8 H 0.111 0.889 9 C 0.096 3.904 10 H 0.075 0.925 11 O -0.283 6.283 12 C 0.056 3.944 13 H 0.115 0.885 14 C 0.010 3.990 15 O -0.363 6.363 16 C 0.035 3.965 17 H 0.072 0.928 18 O -0.335 6.335 19 C 0.036 3.964 20 H 0.061 0.939 21 O -0.330 6.330 22 C -0.002 4.002 23 H 0.068 0.932 24 O -0.361 6.361 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.210 0.790 29 H 0.208 0.792 30 H 0.224 0.776 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.445 -4.817 -4.998 10.932 hybrid contribution 0.352 0.144 0.675 0.774 sum 8.797 -4.674 -4.324 10.859 Atomic orbital electron populations 1.69936 1.06651 1.27139 1.49239 1.24923 0.94554 0.99531 0.92643 0.87183 0.84218 0.82683 0.77261 1.22282 1.13175 1.22289 1.21550 0.88727 0.95540 1.52698 0.88852 1.20743 0.95631 0.88076 0.85907 0.92518 1.88140 1.73994 1.53567 1.12634 1.21662 0.99843 0.87304 0.85611 0.88549 1.22131 0.97222 0.83403 0.96234 1.86691 1.71198 1.24466 1.53910 1.22138 0.81309 0.98071 0.94989 0.92834 1.86692 1.17853 1.32126 1.96795 1.21998 0.82918 0.96257 0.95179 0.93917 1.86745 1.16718 1.78834 1.50702 1.22957 0.80761 0.99524 0.96924 0.93196 1.86424 1.19971 1.81646 1.48010 0.92859 0.92985 0.93839 0.78961 0.79174 0.77611 0.78579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.48 13.96 55.43 0.77 -26.70 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.86 22.98 26.99 -169.99 -4.59 18.39 16 4 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 5 H -0.21 -5.63 5.31 56.52 0.30 -5.33 16 6 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 7 C -0.55 -14.82 6.71 -34.44 -0.23 -15.05 16 8 H 0.09 2.58 5.24 -52.49 -0.28 2.31 16 9 C 0.15 3.62 2.30 -27.83 -0.06 3.56 16 10 H 0.06 1.36 7.57 -51.93 -0.39 0.97 16 11 O -0.36 -8.94 6.87 -58.51 -0.40 -9.34 16 12 C 0.11 2.54 2.31 -26.68 -0.06 2.48 16 13 H 0.10 2.50 6.76 -51.93 -0.35 2.15 16 14 C 0.09 1.68 6.47 37.16 0.24 1.92 16 15 O -0.56 -11.18 13.63 -40.01 -0.55 -11.73 16 16 C 0.09 1.77 3.01 -26.59 -0.08 1.69 16 17 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 18 O -0.53 -9.20 10.82 -61.22 -0.66 -9.86 16 19 C 0.10 1.78 3.32 -26.57 -0.09 1.70 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 21 O -0.52 -10.39 9.83 -35.23 -0.35 -10.74 16 22 C 0.06 1.13 3.13 -26.62 -0.08 1.05 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 O -0.56 -9.93 11.49 -61.23 -0.70 -10.63 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.05 0.98 7.79 -51.93 -0.40 0.57 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.37 5.00 9.12 45.56 0.42 5.42 16 29 H 0.36 4.76 9.08 45.56 0.41 5.18 16 30 H 0.38 6.28 8.32 45.56 0.38 6.66 16 31 H 0.37 5.41 9.08 45.56 0.41 5.82 16 LS Contribution 249.67 15.07 3.76 3.76 Total: -1.00 -35.58 249.67 -3.91 -39.49 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.73 Total: 17.56 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.47 Total: -0.20 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -2.66 Total: -52.30 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.59 Total: 18.39 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -35.58 -3.91 -39.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026829101.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.570 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds