Wall clock time and date at job start Mon Mar 30 2020 07:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47259 * 270.00205 * 3 2 1 5 5 H 1.48507 * 109.46826 * 30.00214 * 3 2 1 6 6 H 1.48496 * 109.46925 * 149.99565 * 3 2 1 7 7 C 1.37882 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99899 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47860 * 60.02241 * 9 7 2 11 11 O 1.42900 * 109.47822 * 299.99685 * 9 7 2 12 12 C 1.42902 * 114.10001 * 301.16389 * 11 9 7 13 13 H 1.08997 * 109.48757 * 58.83102 * 12 11 9 14 14 C 1.52998 * 109.48011 * 178.86031 * 12 11 9 15 15 O 1.42899 * 109.47315 * 294.94364 * 14 12 11 16 16 C 1.53094 * 109.41286 * 298.84622 * 12 11 9 17 17 H 1.08996 * 109.57090 * 177.54853 * 16 12 11 18 18 O 1.42901 * 109.52353 * 297.69988 * 16 12 11 19 19 C 1.53174 * 109.16750 * 57.60734 * 16 12 11 20 20 H 1.08993 * 109.54525 * 183.06085 * 19 16 12 21 21 O 1.42905 * 109.54114 * 62.88335 * 19 16 12 22 22 C 1.53086 * 109.48616 * 180.02562 * 9 7 2 23 23 H 1.09003 * 109.52358 * 182.28685 * 22 9 7 24 24 O 1.42900 * 109.53045 * 302.47305 * 22 9 7 25 25 H 0.96998 * 119.99873 * 0.02562 * 1 2 3 26 26 H 0.96701 * 114.00006 * 299.97181 * 10 9 7 27 27 H 1.09008 * 109.46873 * 54.94871 * 14 12 11 28 28 H 1.09005 * 109.47100 * 174.93921 * 14 12 11 29 29 H 0.96695 * 113.99675 * 179.97438 * 15 14 12 30 30 H 0.96704 * 114.00211 * 299.68929 * 18 16 12 31 31 H 0.96696 * 114.00036 * 60.00255 * 21 19 16 32 32 H 0.96693 * 114.00828 * 179.68328 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4302 -2.5756 -1.1668 11 8 0.4290 -2.5748 1.1670 12 6 1.1510 -2.4815 2.3967 13 1 1.6948 -1.5374 2.4283 14 6 0.1710 -2.5454 3.5698 15 8 -0.6788 -1.3968 3.5438 16 6 2.1415 -3.6447 2.4948 17 1 2.7240 -3.5519 3.4113 18 8 1.4258 -4.8816 2.5071 19 6 3.0807 -3.6089 1.2853 20 1 3.7534 -4.4657 1.3206 21 8 3.8437 -2.4007 1.3083 22 6 2.2455 -3.6631 0.0018 23 1 1.7017 -4.6069 -0.0392 24 8 3.1065 -3.5570 -1.1338 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2255 -1.8680 -1.2335 27 1 -0.4350 -3.4478 3.4883 28 1 0.7271 -2.5648 4.5072 29 1 -1.3274 -1.3711 4.2605 30 1 0.8110 -4.9729 3.2479 31 1 4.3922 -2.2969 2.0978 32 1 3.7667 -4.2609 -1.1940 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026834709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:33 Heat of formation + Delta-G solvation = -267.909477 kcal Electronic energy + Delta-G solvation = -21104.052897 eV Core-core repulsion = 17645.031690 eV Total energy + Delta-G solvation = -3459.021207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62076 -36.72914 -36.05200 -35.56211 -34.92045 -33.56550 -31.82295 -29.73181 -29.23087 -26.30307 -24.62373 -22.23896 -21.07173 -19.33361 -17.58242 -17.21676 -16.87125 -16.31796 -16.23223 -15.54601 -15.33934 -14.72349 -14.20852 -13.71273 -13.49413 -13.14184 -13.03698 -12.91659 -12.18460 -11.88790 -11.66714 -11.37478 -11.01739 -10.79217 -10.71672 -10.30310 -10.13460 -9.96400 -9.63218 -9.57380 -9.33604 -9.10668 -8.46916 -8.38722 -7.71736 -5.87994 -3.96388 3.39912 3.45759 3.50289 4.24786 4.52014 4.54088 4.63018 4.77730 5.20378 5.22271 5.31881 5.46671 5.50829 5.58404 5.72856 5.76456 5.95132 6.16781 6.41129 6.47866 6.84590 7.34555 7.75701 8.04223 8.11461 8.16321 8.24147 8.46256 8.86510 9.26824 9.52878 9.75319 11.16550 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.013688 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.835710 B = 2045.070592 C = 2616.167053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.072 3.928 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.093 0.907 9 C 0.411 3.589 10 O -0.563 6.563 11 O -0.372 6.372 12 C 0.090 3.910 13 H 0.088 0.912 14 C 0.083 3.917 15 O -0.541 6.541 16 C 0.046 3.954 17 H 0.056 0.944 18 O -0.556 6.556 19 C 0.093 3.907 20 H 0.052 0.948 21 O -0.504 6.504 22 C 0.115 3.885 23 H 0.059 0.941 24 O -0.529 6.529 25 H 0.261 0.739 26 H 0.388 0.612 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.364 0.636 30 H 0.373 0.627 31 H 0.349 0.651 32 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -6.831 9.411 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.110 0.890 9 C 0.335 3.665 10 O -0.373 6.373 11 O -0.293 6.293 12 C 0.030 3.970 13 H 0.106 0.894 14 C 0.004 3.996 15 O -0.344 6.344 16 C -0.014 4.014 17 H 0.073 0.927 18 O -0.362 6.362 19 C 0.033 3.967 20 H 0.069 0.931 21 O -0.307 6.307 22 C 0.055 3.945 23 H 0.077 0.923 24 O -0.330 6.330 25 H 0.071 0.929 26 H 0.240 0.760 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.220 0.780 31 H 0.195 0.805 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.474 -6.595 7.487 10.565 hybrid contribution 0.276 0.729 2.001 2.147 sum 3.750 -5.866 9.488 11.769 Atomic orbital electron populations 1.69746 1.05743 1.26664 1.49373 1.25091 0.94759 0.99210 0.94084 0.86560 0.79834 0.83300 0.77914 1.20860 1.21633 1.19879 1.22193 0.94968 0.89649 1.50740 0.88969 1.19281 0.81467 0.90083 0.75711 1.86231 1.53782 1.56284 1.41037 1.87818 1.35506 1.93195 1.12804 1.22076 0.91604 0.97709 0.85572 0.89393 1.22143 0.92572 0.88810 0.96035 1.86844 1.50304 1.43515 1.53688 1.23295 0.94322 0.85369 0.98386 0.92663 1.86470 1.59381 1.37130 1.53172 1.22257 0.91861 0.87688 0.94925 0.93060 1.87287 1.60253 1.39129 1.44061 1.22146 0.90206 0.99542 0.82577 0.92304 1.86801 1.48444 1.52329 1.45456 0.92861 0.76027 0.93919 0.93897 0.79172 0.78028 0.80546 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 11.20 55.43 0.62 -25.11 16 2 C 0.07 2.06 5.32 -17.82 -0.09 1.97 16 3 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.54 -15.29 5.44 -34.44 -0.19 -15.47 16 8 H 0.09 2.68 5.33 -52.49 -0.28 2.40 16 9 C 0.41 11.18 0.92 -27.84 -0.03 11.16 16 10 O -0.56 -16.56 13.13 -62.99 -0.83 -17.38 16 11 O -0.37 -9.76 9.42 -65.27 -0.61 -10.37 16 12 C 0.09 1.89 2.31 -26.68 -0.06 1.83 16 13 H 0.09 2.13 6.76 -51.93 -0.35 1.77 16 14 C 0.08 1.39 6.21 37.16 0.23 1.62 16 15 O -0.54 -10.36 13.63 -40.01 -0.55 -10.90 16 16 C 0.05 0.80 3.05 -26.59 -0.08 0.71 16 17 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 18 O -0.56 -9.08 12.67 -42.72 -0.54 -9.62 16 19 C 0.09 1.75 3.22 -26.52 -0.09 1.67 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 O -0.50 -9.76 9.12 -46.77 -0.43 -10.19 16 22 C 0.12 2.68 2.77 -26.57 -0.07 2.60 16 23 H 0.06 1.37 7.83 -51.93 -0.41 0.97 16 24 O -0.53 -12.09 12.58 -55.56 -0.70 -12.79 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.39 11.54 7.19 45.56 0.33 11.87 16 27 H 0.04 0.65 7.03 -51.92 -0.36 0.28 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.36 4.64 9.12 45.56 0.42 5.05 16 30 H 0.37 4.51 7.44 45.56 0.34 4.85 16 31 H 0.35 4.82 9.08 45.56 0.41 5.24 16 32 H 0.35 5.89 9.08 45.56 0.41 6.31 16 LS Contribution 263.44 15.07 3.97 3.97 Total: -1.00 -37.70 263.44 -4.36 -42.05 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.10 Total: 26.88 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.38 Total: 6.08 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.62 Total: -25.11 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -3.65 Total: -71.26 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -37.70 -4.36 -42.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026834709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.855 kcal (2) G-P(sol) polarization free energy of solvation -37.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds