Wall clock time and date at job start Mon Mar 30 2020 07:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47259 * 270.00205 * 3 2 1 5 5 H 1.48507 * 109.46826 * 30.00214 * 3 2 1 6 6 H 1.48496 * 109.46925 * 149.99565 * 3 2 1 7 7 C 1.37882 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99899 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47860 * 60.02241 * 9 7 2 11 11 O 1.42900 * 109.47822 * 299.99685 * 9 7 2 12 12 C 1.42902 * 114.10001 * 301.16389 * 11 9 7 13 13 H 1.08997 * 109.48757 * 58.83102 * 12 11 9 14 14 C 1.52998 * 109.48011 * 178.86031 * 12 11 9 15 15 O 1.42899 * 109.47315 * 294.94364 * 14 12 11 16 16 C 1.53094 * 109.41286 * 298.84622 * 12 11 9 17 17 H 1.08996 * 109.57090 * 177.54853 * 16 12 11 18 18 O 1.42901 * 109.52353 * 297.69988 * 16 12 11 19 19 C 1.53174 * 109.16750 * 57.60734 * 16 12 11 20 20 H 1.08993 * 109.54525 * 183.06085 * 19 16 12 21 21 O 1.42905 * 109.54114 * 62.88335 * 19 16 12 22 22 C 1.53086 * 109.48616 * 180.02562 * 9 7 2 23 23 H 1.09003 * 109.52358 * 182.28685 * 22 9 7 24 24 O 1.42900 * 109.53045 * 302.47305 * 22 9 7 25 25 H 0.96998 * 119.99873 * 0.02562 * 1 2 3 26 26 H 0.96701 * 114.00006 * 299.97181 * 10 9 7 27 27 H 1.09008 * 109.46873 * 54.94871 * 14 12 11 28 28 H 1.09005 * 109.47100 * 174.93921 * 14 12 11 29 29 H 0.96695 * 113.99675 * 179.97438 * 15 14 12 30 30 H 0.96704 * 114.00211 * 299.68929 * 18 16 12 31 31 H 0.96696 * 114.00036 * 60.00255 * 21 19 16 32 32 H 0.96693 * 114.00828 * 179.68328 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4302 -2.5756 -1.1668 11 8 0.4290 -2.5748 1.1670 12 6 1.1510 -2.4815 2.3967 13 1 1.6948 -1.5374 2.4283 14 6 0.1710 -2.5454 3.5698 15 8 -0.6788 -1.3968 3.5438 16 6 2.1415 -3.6447 2.4948 17 1 2.7240 -3.5519 3.4113 18 8 1.4258 -4.8816 2.5071 19 6 3.0807 -3.6089 1.2853 20 1 3.7534 -4.4657 1.3206 21 8 3.8437 -2.4007 1.3083 22 6 2.2455 -3.6631 0.0018 23 1 1.7017 -4.6069 -0.0392 24 8 3.1065 -3.5570 -1.1338 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2255 -1.8680 -1.2335 27 1 -0.4350 -3.4478 3.4883 28 1 0.7271 -2.5648 4.5072 29 1 -1.3274 -1.3711 4.2605 30 1 0.8110 -4.9729 3.2479 31 1 4.3922 -2.2969 2.0978 32 1 3.7667 -4.2609 -1.1940 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026834709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:32 Heat of formation + Delta-G solvation = -308.276638 kcal Electronic energy + Delta-G solvation = -21105.803349 eV Core-core repulsion = 17645.031690 eV Total energy + Delta-G solvation = -3460.771658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20447 -38.24140 -37.71188 -37.04769 -36.49368 -35.49836 -33.98979 -31.23048 -30.88724 -28.19309 -26.31998 -23.90409 -22.67013 -21.01915 -19.08604 -18.91404 -18.55504 -18.09613 -17.78710 -17.11813 -16.92248 -16.54332 -15.92543 -15.39383 -15.09561 -14.80355 -14.69115 -14.49998 -13.78194 -13.58395 -13.34925 -13.10963 -12.90281 -12.77592 -12.43573 -12.20733 -11.82159 -11.67790 -11.28116 -11.07918 -10.87974 -10.70441 -10.57253 -10.21928 -9.63017 -8.01162 -6.15179 1.40214 1.41992 1.52392 2.47102 2.87634 3.08948 3.17372 3.27471 3.40113 3.75041 3.91340 3.97122 4.09228 4.26073 4.33156 4.40488 4.57329 4.65392 4.70258 4.91092 5.23610 5.34934 5.94291 6.11545 6.70832 6.84392 7.01122 7.04166 7.07274 7.21424 7.32134 7.59104 9.01586 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.013688 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.835710 B = 2045.070592 C = 2616.167053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.394 3.606 10 O -0.584 6.584 11 O -0.400 6.400 12 C 0.075 3.925 13 H 0.050 0.950 14 C 0.082 3.918 15 O -0.583 6.583 16 C 0.058 3.942 17 H 0.105 0.895 18 O -0.565 6.565 19 C 0.096 3.904 20 H 0.089 0.911 21 O -0.532 6.532 22 C 0.113 3.887 23 H 0.051 0.949 24 O -0.555 6.555 25 H 0.258 0.742 26 H 0.378 0.622 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.388 0.612 30 H 0.392 0.608 31 H 0.375 0.625 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -7.688 11.477 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.103 0.897 9 C 0.318 3.682 10 O -0.393 6.393 11 O -0.322 6.322 12 C 0.016 3.984 13 H 0.068 0.932 14 C 0.005 3.995 15 O -0.390 6.390 16 C -0.001 4.001 17 H 0.123 0.877 18 O -0.373 6.373 19 C 0.037 3.963 20 H 0.106 0.894 21 O -0.338 6.338 22 C 0.053 3.947 23 H 0.069 0.931 24 O -0.361 6.361 25 H 0.067 0.933 26 H 0.228 0.772 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.237 0.763 30 H 0.242 0.758 31 H 0.224 0.776 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.921 -7.483 9.606 13.134 hybrid contribution -0.159 0.944 1.394 1.691 sum 4.761 -6.539 11.001 13.655 Atomic orbital electron populations 1.69871 1.06877 1.26894 1.50638 1.25798 0.95529 1.02220 0.94205 0.85658 0.78993 0.79750 0.77646 1.21073 1.21427 1.18888 1.22336 0.94718 0.90628 1.49916 0.89654 1.19585 0.81631 0.91521 0.75471 1.86220 1.53885 1.55881 1.43351 1.87733 1.36812 1.93473 1.14168 1.22468 0.93187 0.97874 0.84863 0.93187 1.22295 0.92447 0.88649 0.96130 1.86769 1.51654 1.44854 1.55693 1.23119 0.93357 0.84021 0.99633 0.87750 1.86440 1.60037 1.36113 1.54731 1.22179 0.92307 0.88689 0.93154 0.89386 1.87155 1.60943 1.39676 1.46040 1.22050 0.90386 0.97237 0.85026 0.93103 1.86711 1.49307 1.54049 1.45987 0.93279 0.77167 0.92249 0.89045 0.76338 0.75778 0.77594 0.77447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.43 11.20 21.45 0.24 -54.19 16 2 C 0.02 1.32 5.32 84.66 0.45 1.77 16 3 Si 0.95 46.53 29.54 68.60 2.03 48.56 16 4 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.89 5.44 25.60 0.14 -30.75 16 8 H 0.09 4.96 5.33 -2.91 -0.02 4.94 16 9 C 0.39 21.70 0.92 29.88 0.03 21.72 16 10 O -0.58 -35.54 13.13 -122.44 -1.61 -37.15 16 11 O -0.40 -21.09 9.42 -120.25 -1.13 -22.23 16 12 C 0.07 3.03 2.31 30.62 0.07 3.10 16 13 H 0.05 2.39 6.76 -2.39 -0.02 2.38 16 14 C 0.08 2.54 6.21 71.98 0.45 2.98 16 15 O -0.58 -21.64 13.63 -144.41 -1.97 -23.61 16 16 C 0.06 1.80 3.05 30.68 0.09 1.90 16 17 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 18 O -0.56 -16.33 12.67 -141.82 -1.80 -18.13 16 19 C 0.10 3.37 3.22 30.73 0.10 3.46 16 20 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 21 O -0.53 -19.35 9.12 -137.95 -1.26 -20.61 16 22 C 0.11 5.15 2.77 30.70 0.09 5.24 16 23 H 0.05 2.35 7.83 -2.39 -0.02 2.34 16 24 O -0.56 -25.07 12.58 -129.54 -1.63 -26.70 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.38 23.62 7.19 -74.06 -0.53 23.09 16 27 H 0.06 1.61 7.03 -2.38 -0.02 1.60 16 28 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.39 9.28 9.12 -74.06 -0.68 8.61 16 30 H 0.39 7.83 7.44 -74.05 -0.55 7.27 16 31 H 0.38 9.13 9.08 -74.06 -0.67 8.46 16 32 H 0.38 12.09 9.08 -74.06 -0.67 11.41 16 Total: -1.00 -84.06 263.44 -7.59 -91.65 By element: Atomic # 1 Polarization: 54.86 SS G_CDS: -1.88 Total: 52.98 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 1.41 Total: 9.42 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.24 Total: -54.19 kcal Atomic # 8 Polarization: -139.03 SS G_CDS: -9.39 Total: -148.42 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -84.06 -7.59 -91.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026834709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.624 kcal (2) G-P(sol) polarization free energy of solvation -84.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -308.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds