Wall clock time and date at job start Mon Mar 30 2020 07:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48500 * 109.47330 * 270.00176 * 3 2 1 5 5 H 1.48504 * 109.47024 * 30.00232 * 3 2 1 6 6 H 1.48501 * 109.47176 * 149.99843 * 3 2 1 7 7 C 1.37878 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99443 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00199 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.48920 * 59.97096 * 9 7 2 11 11 O 1.42902 * 109.48193 * 299.94075 * 9 7 2 12 12 C 1.42901 * 114.09947 * 178.85989 * 11 9 7 13 13 H 1.08995 * 109.48120 * 301.17652 * 12 11 9 14 14 C 1.53001 * 109.48284 * 181.13770 * 12 11 9 15 15 O 1.42903 * 109.46538 * 65.05953 * 14 12 11 16 16 C 1.53099 * 109.41416 * 61.15697 * 12 11 9 17 17 H 1.09002 * 109.52293 * 62.29711 * 16 12 11 18 18 O 1.42901 * 109.57159 * 182.45668 * 16 12 11 19 19 C 1.53181 * 109.16475 * 302.39091 * 16 12 11 20 20 H 1.08995 * 109.53986 * 297.02808 * 19 16 12 21 21 O 1.42898 * 109.54571 * 176.84765 * 19 16 12 22 22 C 1.53093 * 109.47798 * 179.97438 * 9 7 2 23 23 H 1.09002 * 109.52422 * 297.49374 * 22 9 7 24 24 O 1.42902 * 109.57546 * 57.65735 * 22 9 7 25 25 H 0.97006 * 119.99849 * 359.97438 * 1 2 3 26 26 H 0.96691 * 113.99868 * 300.02332 * 10 9 7 27 27 H 1.08996 * 109.47276 * 185.05500 * 14 12 11 28 28 H 1.08994 * 109.46831 * 305.06047 * 14 12 11 29 29 H 0.96697 * 113.99313 * 180.02562 * 15 14 12 30 30 H 0.96705 * 114.00049 * 299.83733 * 18 16 12 31 31 H 0.96696 * 113.99715 * 59.99689 * 21 19 16 32 32 H 0.96700 * 113.99978 * 179.71809 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 0.4292 -2.5741 -1.1684 11 8 0.4299 -2.5764 1.1653 12 6 -0.3515 -3.7698 1.2510 13 1 -0.9992 -3.8437 0.3776 14 6 -1.2068 -3.7298 2.5190 15 8 -2.1547 -2.6650 2.4206 16 6 0.5788 -4.9847 1.3009 17 1 1.1990 -4.9321 2.1958 18 8 -0.1995 -6.1828 1.3290 19 6 1.4733 -4.9845 0.0574 20 1 0.8567 -5.0885 -0.8353 21 8 2.3951 -6.0739 0.1314 22 6 2.2456 -3.6629 -0.0027 23 1 2.8429 -3.6309 -0.9140 24 8 3.1043 -3.5599 1.1349 25 1 -0.4850 0.8401 0.0004 26 1 -0.2260 -1.8661 -1.2341 27 1 -1.7345 -4.6768 2.6314 28 1 -0.5653 -3.5663 3.3849 29 1 -2.7320 -2.5799 3.1917 30 1 -0.7919 -6.2493 2.0905 31 1 1.9738 -6.9430 0.1789 32 1 3.7582 -4.2693 1.1996 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026834713.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:34 Heat of formation + Delta-G solvation = -323.509861 kcal Electronic energy + Delta-G solvation = -20671.567347 eV Core-core repulsion = 17210.135126 eV Total energy + Delta-G solvation = -3461.432220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28966 -38.34472 -38.21287 -37.08995 -36.38058 -35.64698 -34.25202 -31.52402 -31.00904 -28.45066 -26.41345 -23.86632 -22.76007 -21.14172 -19.28336 -19.13211 -18.81124 -18.29002 -18.06673 -17.47776 -16.80437 -16.43884 -15.99382 -15.67516 -15.18394 -15.11456 -14.81025 -14.65062 -14.00150 -13.73438 -13.61851 -13.31037 -12.95492 -12.81802 -12.43403 -12.30525 -12.19512 -11.70529 -11.42645 -11.18372 -11.00266 -10.85215 -10.75036 -10.53098 -10.16871 -8.24221 -6.46478 1.40350 1.41493 1.53257 2.36028 2.65610 2.93078 2.99237 3.15086 3.24871 3.49061 3.65745 3.93331 4.00179 4.17316 4.21171 4.26336 4.42385 4.53667 4.75362 4.82670 4.90031 5.09328 5.67293 5.94843 6.29035 6.57544 6.66195 6.75422 6.89644 6.98836 7.25132 7.39448 8.80883 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.010379 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.968924 B = 2697.227942 C = 3451.589825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.036 3.964 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.064 0.936 9 C 0.393 3.607 10 O -0.603 6.603 11 O -0.370 6.370 12 C 0.045 3.955 13 H 0.038 0.962 14 C 0.089 3.911 15 O -0.582 6.582 16 C 0.074 3.926 17 H 0.074 0.926 18 O -0.562 6.562 19 C 0.094 3.906 20 H 0.059 0.941 21 O -0.563 6.563 22 C 0.121 3.879 23 H 0.057 0.943 24 O -0.548 6.548 25 H 0.270 0.730 26 H 0.386 0.614 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.392 0.608 30 H 0.396 0.604 31 H 0.398 0.602 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -10.151 5.037 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.168 4.168 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.082 0.918 9 C 0.318 3.682 10 O -0.416 6.416 11 O -0.291 6.291 12 C -0.014 4.014 13 H 0.056 0.944 14 C 0.011 3.989 15 O -0.390 6.390 16 C 0.014 3.986 17 H 0.092 0.908 18 O -0.372 6.372 19 C 0.034 3.966 20 H 0.077 0.923 21 O -0.371 6.371 22 C 0.061 3.939 23 H 0.075 0.925 24 O -0.354 6.354 25 H 0.079 0.921 26 H 0.238 0.762 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.241 0.759 30 H 0.248 0.752 31 H 0.249 0.751 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.967 -9.458 4.033 10.327 hybrid contribution -0.713 0.329 0.739 1.078 sum -1.680 -9.129 4.771 10.437 Atomic orbital electron populations 1.69841 1.07013 1.28281 1.47265 1.25893 0.95890 1.02873 0.92134 0.85406 0.78507 0.78141 0.78583 1.19279 1.20298 1.19617 1.21445 0.93321 0.90573 1.54138 0.91822 1.19690 0.82527 0.91571 0.74422 1.86063 1.53314 1.56040 1.46149 1.88514 1.58278 1.37736 1.44556 1.22718 0.92988 0.87315 0.98424 0.94408 1.22186 0.90290 0.90864 0.95513 1.86677 1.51025 1.54500 1.46755 1.22735 0.92218 0.84269 0.99345 0.90800 1.86370 1.59120 1.39072 1.52610 1.22336 0.90102 0.88005 0.96167 0.92294 1.86309 1.35944 1.17852 1.97032 1.21821 0.91695 0.91150 0.89220 0.92488 1.86552 1.49605 1.53515 1.45713 0.92058 0.76205 0.88839 0.92949 0.75865 0.75220 0.75132 0.76547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.07 11.20 21.45 0.24 -50.83 16 2 C 0.04 2.03 5.32 84.65 0.45 2.48 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.56 -32.43 8.11 25.60 0.21 -32.22 16 8 H 0.06 3.71 7.64 -2.91 -0.02 3.69 16 9 C 0.39 21.09 0.69 29.88 0.02 21.11 16 10 O -0.60 -32.88 11.75 -126.21 -1.48 -34.36 16 11 O -0.37 -19.63 9.28 -120.28 -1.12 -20.75 16 12 C 0.04 1.86 2.49 30.63 0.08 1.94 16 13 H 0.04 1.75 7.56 -2.39 -0.02 1.74 16 14 C 0.09 2.86 6.57 71.98 0.47 3.33 16 15 O -0.58 -21.10 13.63 -144.41 -1.97 -23.07 16 16 C 0.07 2.57 2.66 30.69 0.08 2.65 16 17 H 0.07 2.58 7.83 -2.39 -0.02 2.56 16 18 O -0.56 -14.90 12.91 -142.95 -1.85 -16.75 16 19 C 0.09 3.58 2.87 30.72 0.09 3.67 16 20 H 0.06 2.42 7.82 -2.39 -0.02 2.40 16 21 O -0.56 -17.60 12.73 -129.88 -1.65 -19.25 16 22 C 0.12 5.56 2.70 30.69 0.08 5.64 16 23 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 24 O -0.55 -23.75 12.22 -129.39 -1.58 -25.33 16 25 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 26 H 0.39 22.01 7.18 -74.06 -0.53 21.48 16 27 H 0.09 1.99 6.62 -2.39 -0.02 1.98 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.39 9.09 9.12 -74.06 -0.68 8.41 16 30 H 0.40 6.79 7.37 -74.05 -0.55 6.24 16 31 H 0.40 9.32 8.71 -74.06 -0.65 8.67 16 32 H 0.39 12.95 8.52 -74.06 -0.63 12.32 16 Total: -1.00 -74.23 268.96 -7.71 -81.94 By element: Atomic # 1 Polarization: 55.24 SS G_CDS: -1.81 Total: 53.43 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 1.48 Total: 8.59 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.24 Total: -50.83 kcal Atomic # 8 Polarization: -129.85 SS G_CDS: -9.65 Total: -139.50 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.23 -7.71 -81.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026834713.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.570 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -315.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -323.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds