Wall clock time and date at job start Mon Mar 30 2020 07:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99771 * 2 1 4 4 H 1.48495 * 109.47187 * 240.00138 * 3 2 1 5 5 H 1.48505 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46919 * 119.99964 * 3 2 1 7 7 C 1.37870 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00624 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00072 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47987 * 59.97592 * 9 7 2 11 11 O 1.42909 * 109.47953 * 299.94784 * 9 7 2 12 12 C 1.42903 * 114.09460 * 301.17014 * 11 9 7 13 13 H 1.09002 * 109.48181 * 58.82667 * 12 11 9 14 14 C 1.52999 * 109.48512 * 178.85548 * 12 11 9 15 15 O 1.42896 * 109.47336 * 294.96995 * 14 12 11 16 16 C 1.53098 * 109.41641 * 298.84131 * 12 11 9 17 17 H 1.08992 * 109.52180 * 177.57654 * 16 12 11 18 18 O 1.42895 * 109.52332 * 297.70688 * 16 12 11 19 19 C 1.53178 * 109.15976 * 57.61188 * 16 12 11 20 20 H 1.08993 * 109.54622 * 183.15317 * 19 16 12 21 21 O 1.42899 * 109.54574 * 62.97223 * 19 16 12 22 22 C 1.53088 * 109.48568 * 180.02562 * 9 7 2 23 23 H 1.09004 * 109.51664 * 302.47206 * 22 9 7 24 24 O 1.42899 * 109.52502 * 182.28532 * 22 9 7 25 25 H 0.97001 * 120.00492 * 359.97438 * 1 2 3 26 26 H 0.96706 * 113.99825 * 300.03066 * 10 9 7 27 27 H 1.09000 * 109.47509 * 54.97467 * 14 12 11 28 28 H 1.09008 * 109.46674 * 174.96835 * 14 12 11 29 29 H 0.96701 * 113.99987 * 180.02562 * 15 14 12 30 30 H 0.96699 * 114.00162 * 299.99798 * 18 16 12 31 31 H 0.96700 * 113.99741 * 60.00474 * 21 19 16 32 32 H 0.96703 * 113.99793 * 180.31382 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4287 -2.5746 -1.1667 11 8 0.4309 -2.5759 1.1672 12 6 1.1548 -2.4834 2.3958 13 1 1.6985 -1.5392 2.4272 14 6 0.1768 -2.5483 3.5705 15 8 -0.6736 -1.4002 3.5464 16 6 2.1457 -3.6466 2.4915 17 1 2.7288 -3.5538 3.4076 18 8 1.4303 -4.8835 2.5039 19 6 3.0830 -3.6094 1.2806 20 1 3.7549 -4.4670 1.3131 21 8 3.8472 -2.4022 1.3044 22 6 2.2458 -3.6629 -0.0005 23 1 2.9017 -3.5813 -0.8673 24 8 1.5331 -4.9003 -0.0542 25 1 -0.4851 0.8400 0.0004 26 1 -0.2267 -1.8665 -1.2323 27 1 -0.4289 -3.4509 3.4897 28 1 0.7345 -2.5678 4.5069 29 1 -1.3205 -1.3748 4.2647 30 1 0.8131 -4.9736 3.2428 31 1 4.3971 -2.3004 2.0932 32 1 2.1021 -5.6822 -0.0524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026834715.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:36 Heat of formation + Delta-G solvation = -268.124824 kcal Electronic energy + Delta-G solvation = -21186.826009 eV Core-core repulsion = 17727.795464 eV Total energy + Delta-G solvation = -3459.030545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.57009 -36.54732 -35.96656 -35.42611 -35.03732 -33.53937 -31.89389 -29.58224 -29.14707 -26.40083 -24.60375 -22.23272 -21.03726 -19.24289 -17.51289 -17.18506 -16.40786 -16.36777 -16.16917 -15.72493 -15.22650 -14.75076 -14.38022 -13.86995 -13.35361 -13.13489 -13.00541 -12.87187 -11.84807 -11.70193 -11.55755 -11.39635 -11.00803 -10.84470 -10.82014 -10.30947 -10.03344 -9.92268 -9.76010 -9.52900 -9.39883 -8.98969 -8.52777 -8.36965 -7.65928 -5.97425 -4.11020 3.34433 3.39054 3.41746 4.27675 4.43263 4.61700 4.78658 4.88217 5.19810 5.27345 5.38682 5.49406 5.56222 5.64274 5.78078 5.82229 6.02976 6.21223 6.35341 6.69547 6.91763 7.36031 7.91151 7.97043 8.06544 8.15466 8.17028 8.47779 8.88163 9.15304 9.52573 9.65242 11.06400 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.012655 C = 0.010870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.491790 B = 2211.984121 C = 2575.185206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.080 3.920 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.420 3.580 10 O -0.563 6.563 11 O -0.367 6.367 12 C 0.093 3.907 13 H 0.082 0.918 14 C 0.083 3.917 15 O -0.542 6.542 16 C 0.051 3.949 17 H 0.047 0.953 18 O -0.540 6.540 19 C 0.093 3.907 20 H 0.050 0.950 21 O -0.514 6.514 22 C 0.108 3.892 23 H 0.058 0.942 24 O -0.525 6.525 25 H 0.265 0.735 26 H 0.386 0.614 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.363 0.637 30 H 0.366 0.634 31 H 0.355 0.645 32 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -5.851 8.619 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.125 4.125 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.601 4.601 8 H 0.107 0.893 9 C 0.344 3.656 10 O -0.372 6.372 11 O -0.287 6.287 12 C 0.033 3.967 13 H 0.100 0.900 14 C 0.005 3.995 15 O -0.345 6.345 16 C -0.009 4.009 17 H 0.065 0.935 18 O -0.344 6.344 19 C 0.033 3.967 20 H 0.068 0.932 21 O -0.317 6.317 22 C 0.048 3.952 23 H 0.076 0.924 24 O -0.327 6.327 25 H 0.075 0.925 26 H 0.238 0.762 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.207 0.793 30 H 0.212 0.788 31 H 0.201 0.799 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.064 -5.745 6.791 9.780 hybrid contribution 0.581 0.927 1.893 2.186 sum 4.645 -4.819 8.685 10.964 Atomic orbital electron populations 1.69747 1.05799 1.27070 1.47865 1.25018 0.94743 0.99164 0.93578 0.86569 0.79459 0.82707 0.78537 1.20268 1.21491 1.20293 1.22067 0.94830 0.89948 1.53266 0.89346 1.19355 0.81881 0.88305 0.76090 1.86239 1.53746 1.56273 1.40987 1.87798 1.35310 1.93082 1.12555 1.22015 0.91513 0.97373 0.85817 0.90000 1.22150 0.92578 0.88767 0.96051 1.86830 1.50423 1.43687 1.53537 1.23099 0.94306 0.85986 0.97552 0.93496 1.86563 1.58831 1.36205 1.52819 1.22214 0.91542 0.87382 0.95607 0.93176 1.87131 1.60324 1.39549 1.44735 1.22193 0.94141 0.85611 0.93247 0.92409 1.86856 1.35326 1.13897 1.96580 0.92526 0.76198 0.93842 0.94118 0.79268 0.78767 0.79912 0.80463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 11.20 55.43 0.62 -24.52 16 2 C 0.08 2.24 5.32 -17.82 -0.09 2.15 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.56 -15.64 5.82 -34.44 -0.20 -15.84 16 8 H 0.09 2.43 5.44 -52.49 -0.29 2.15 16 9 C 0.42 11.44 0.86 -27.84 -0.02 11.42 16 10 O -0.56 -16.54 13.05 -63.97 -0.83 -17.37 16 11 O -0.37 -9.88 9.36 -67.33 -0.63 -10.51 16 12 C 0.09 2.01 2.31 -26.68 -0.06 1.95 16 13 H 0.08 2.02 6.76 -51.93 -0.35 1.67 16 14 C 0.08 1.47 6.21 37.16 0.23 1.70 16 15 O -0.54 -10.72 13.63 -40.02 -0.55 -11.27 16 16 C 0.05 0.91 3.05 -26.59 -0.08 0.83 16 17 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 18 O -0.54 -9.35 11.43 -61.22 -0.70 -10.05 16 19 C 0.09 1.76 3.31 -26.57 -0.09 1.67 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 21 O -0.51 -9.69 9.28 -35.23 -0.33 -10.01 16 22 C 0.11 2.51 2.86 -26.62 -0.08 2.44 16 23 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 24 O -0.52 -11.66 11.35 -65.26 -0.74 -12.40 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.39 11.49 7.18 45.56 0.33 11.81 16 27 H 0.04 0.71 7.02 -51.93 -0.36 0.35 16 28 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.36 4.85 9.12 45.56 0.42 5.26 16 30 H 0.37 4.97 7.43 45.56 0.34 5.31 16 31 H 0.35 4.75 9.08 45.56 0.41 5.16 16 32 H 0.35 5.96 9.08 45.56 0.41 6.38 16 LS Contribution 261.87 15.07 3.95 3.95 Total: -1.00 -36.73 261.87 -4.54 -41.28 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.08 Total: 27.89 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.40 Total: 6.31 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.62 Total: -24.52 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -3.78 Total: -71.62 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -36.73 -4.54 -41.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026834715.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.849 kcal (2) G-P(sol) polarization free energy of solvation -36.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds