Wall clock time and date at job start Mon Mar 30 2020 07:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99771 * 2 1 4 4 H 1.48495 * 109.47187 * 240.00138 * 3 2 1 5 5 H 1.48505 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46919 * 119.99964 * 3 2 1 7 7 C 1.37870 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00624 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00072 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47987 * 59.97592 * 9 7 2 11 11 O 1.42909 * 109.47953 * 299.94784 * 9 7 2 12 12 C 1.42903 * 114.09460 * 301.17014 * 11 9 7 13 13 H 1.09002 * 109.48181 * 58.82667 * 12 11 9 14 14 C 1.52999 * 109.48512 * 178.85548 * 12 11 9 15 15 O 1.42896 * 109.47336 * 294.96995 * 14 12 11 16 16 C 1.53098 * 109.41641 * 298.84131 * 12 11 9 17 17 H 1.08992 * 109.52180 * 177.57654 * 16 12 11 18 18 O 1.42895 * 109.52332 * 297.70688 * 16 12 11 19 19 C 1.53178 * 109.15976 * 57.61188 * 16 12 11 20 20 H 1.08993 * 109.54622 * 183.15317 * 19 16 12 21 21 O 1.42899 * 109.54574 * 62.97223 * 19 16 12 22 22 C 1.53088 * 109.48568 * 180.02562 * 9 7 2 23 23 H 1.09004 * 109.51664 * 302.47206 * 22 9 7 24 24 O 1.42899 * 109.52502 * 182.28532 * 22 9 7 25 25 H 0.97001 * 120.00492 * 359.97438 * 1 2 3 26 26 H 0.96706 * 113.99825 * 300.03066 * 10 9 7 27 27 H 1.09000 * 109.47509 * 54.97467 * 14 12 11 28 28 H 1.09008 * 109.46674 * 174.96835 * 14 12 11 29 29 H 0.96701 * 113.99987 * 180.02562 * 15 14 12 30 30 H 0.96699 * 114.00162 * 299.99798 * 18 16 12 31 31 H 0.96700 * 113.99741 * 60.00474 * 21 19 16 32 32 H 0.96703 * 113.99793 * 180.31382 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4287 -2.5746 -1.1667 11 8 0.4309 -2.5759 1.1672 12 6 1.1548 -2.4834 2.3958 13 1 1.6985 -1.5392 2.4272 14 6 0.1768 -2.5483 3.5705 15 8 -0.6736 -1.4002 3.5464 16 6 2.1457 -3.6466 2.4915 17 1 2.7288 -3.5538 3.4076 18 8 1.4303 -4.8835 2.5039 19 6 3.0830 -3.6094 1.2806 20 1 3.7549 -4.4670 1.3131 21 8 3.8472 -2.4022 1.3044 22 6 2.2458 -3.6629 -0.0005 23 1 2.9017 -3.5813 -0.8673 24 8 1.5331 -4.9003 -0.0542 25 1 -0.4851 0.8400 0.0004 26 1 -0.2267 -1.8665 -1.2323 27 1 -0.4289 -3.4509 3.4897 28 1 0.7345 -2.5678 4.5069 29 1 -1.3205 -1.3748 4.2647 30 1 0.8131 -4.9736 3.2428 31 1 4.3971 -2.3004 2.0932 32 1 2.1021 -5.6822 -0.0524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026834715.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:36 Heat of formation + Delta-G solvation = -306.700993 kcal Electronic energy + Delta-G solvation = -21188.498797 eV Core-core repulsion = 17727.795464 eV Total energy + Delta-G solvation = -3460.703333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18038 -38.07383 -37.66710 -36.81930 -36.73736 -35.46760 -34.02376 -31.11723 -30.85814 -28.21476 -26.34194 -23.92186 -22.66876 -20.95694 -19.08613 -18.81946 -18.33759 -17.89868 -17.66307 -17.46426 -16.83765 -16.56003 -15.98952 -15.69593 -14.98085 -14.72024 -14.67422 -14.46520 -13.58105 -13.41826 -13.24979 -13.09400 -12.82401 -12.72240 -12.55330 -12.19157 -11.81942 -11.64799 -11.43490 -11.01733 -10.87652 -10.62667 -10.56149 -10.25504 -9.53170 -8.06133 -6.25790 1.41370 1.43593 1.51296 2.42589 2.92862 3.13042 3.17683 3.34378 3.44384 3.74080 3.90833 4.02886 4.13857 4.28385 4.32172 4.42999 4.57745 4.62360 4.74874 5.05203 5.25917 5.36484 5.87180 6.01860 6.75680 6.81665 7.01117 7.05143 7.05596 7.18573 7.35188 7.52560 8.96308 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.012655 C = 0.010870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.491790 B = 2211.984121 C = 2575.185206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.031 3.969 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.566 4.566 8 H 0.089 0.911 9 C 0.402 3.598 10 O -0.584 6.584 11 O -0.398 6.398 12 C 0.078 3.922 13 H 0.046 0.954 14 C 0.083 3.917 15 O -0.583 6.583 16 C 0.062 3.938 17 H 0.095 0.905 18 O -0.549 6.549 19 C 0.097 3.903 20 H 0.087 0.913 21 O -0.537 6.537 22 C 0.106 3.894 23 H 0.042 0.958 24 O -0.541 6.541 25 H 0.261 0.739 26 H 0.376 0.624 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.388 0.612 30 H 0.383 0.617 31 H 0.381 0.619 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -6.587 10.636 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.170 4.170 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.604 4.604 8 H 0.107 0.893 9 C 0.326 3.674 10 O -0.393 6.393 11 O -0.320 6.320 12 C 0.019 3.981 13 H 0.064 0.936 14 C 0.005 3.995 15 O -0.389 6.389 16 C 0.002 3.998 17 H 0.113 0.887 18 O -0.356 6.356 19 C 0.037 3.963 20 H 0.105 0.895 21 O -0.345 6.345 22 C 0.046 3.954 23 H 0.060 0.940 24 O -0.346 6.346 25 H 0.070 0.930 26 H 0.227 0.773 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.236 0.764 30 H 0.232 0.768 31 H 0.231 0.769 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.586 -6.511 8.860 12.333 hybrid contribution 0.102 1.095 1.307 1.708 sum 5.688 -5.416 10.166 12.847 Atomic orbital electron populations 1.69884 1.07138 1.27355 1.49180 1.25773 0.95470 1.02347 0.93446 0.85615 0.78243 0.78815 0.78782 1.19947 1.21529 1.19258 1.22286 0.94901 0.90741 1.52505 0.89344 1.19684 0.81964 0.90028 0.75712 1.86226 1.53881 1.55913 1.43243 1.87716 1.36832 1.93397 1.14019 1.22397 0.93033 0.97606 0.85087 0.93582 1.22285 0.92449 0.88477 0.96284 1.86758 1.51743 1.44881 1.55545 1.22960 0.93376 0.84531 0.98942 0.88734 1.86529 1.59439 1.35370 1.54230 1.22110 0.91913 0.88574 0.93690 0.89521 1.87006 1.60926 1.39856 1.46699 1.22010 0.93147 0.84865 0.95378 0.94036 1.86781 1.36475 1.14571 1.96780 0.92972 0.77324 0.92673 0.89311 0.76424 0.76798 0.76923 0.77821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.44 11.20 21.44 0.24 -53.19 16 2 C 0.03 1.78 5.32 84.65 0.45 2.23 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.57 -31.78 5.82 25.60 0.15 -31.63 16 8 H 0.09 4.87 5.44 -2.91 -0.02 4.85 16 9 C 0.40 22.19 0.86 29.88 0.03 22.21 16 10 O -0.58 -35.55 13.05 -121.50 -1.59 -37.14 16 11 O -0.40 -21.57 9.36 -118.29 -1.11 -22.68 16 12 C 0.08 3.26 2.31 30.63 0.07 3.33 16 13 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 14 C 0.08 2.71 6.21 71.98 0.45 3.16 16 15 O -0.58 -22.41 13.63 -144.40 -1.97 -24.38 16 16 C 0.06 1.99 3.05 30.69 0.09 2.09 16 17 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 18 O -0.55 -16.98 11.43 -124.13 -1.42 -18.40 16 19 C 0.10 3.41 3.31 30.70 0.10 3.51 16 20 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 21 O -0.54 -19.03 9.28 -148.98 -1.38 -20.41 16 22 C 0.11 4.86 2.86 30.67 0.09 4.95 16 23 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 24 O -0.54 -23.46 11.35 -120.27 -1.36 -24.82 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.38 23.54 7.18 -74.05 -0.53 23.01 16 27 H 0.06 1.66 7.02 -2.39 -0.02 1.64 16 28 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.39 9.77 9.12 -74.06 -0.68 9.09 16 30 H 0.38 8.86 7.43 -74.06 -0.55 8.31 16 31 H 0.38 8.90 9.08 -74.06 -0.67 8.23 16 32 H 0.37 11.94 9.08 -74.06 -0.67 11.27 16 Total: -1.00 -81.63 261.87 -7.01 -88.64 By element: Atomic # 1 Polarization: 57.40 SS G_CDS: -1.88 Total: 55.52 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 1.43 Total: 9.85 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.24 Total: -53.19 kcal Atomic # 8 Polarization: -139.00 SS G_CDS: -8.83 Total: -147.83 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -81.63 -7.01 -88.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026834715.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.061 kcal (2) G-P(sol) polarization free energy of solvation -81.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -299.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -306.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds