Wall clock time and date at job start Mon Mar 30 2020 07:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47439 * 111.00045 * 2 1 4 4 C 1.54322 * 107.36952 * 236.65966 * 3 2 1 5 5 H 1.09005 * 110.70342 * 96.18020 * 4 3 2 6 6 C 1.50693 * 110.70597 * 219.41427 * 4 3 2 7 7 H 1.08008 * 119.99842 * 118.55135 * 6 4 3 8 8 C 1.37876 * 120.00587 * 298.54543 * 6 4 3 9 9 N 1.31513 * 120.00540 * 180.02562 * 8 6 4 10 10 Si 1.86802 * 119.99381 * 0.02562 * 8 6 4 11 11 H 1.48504 * 109.47267 * 90.00067 * 10 8 6 12 12 H 1.48507 * 109.46794 * 209.99789 * 10 8 6 13 13 H 1.48504 * 109.47265 * 329.99739 * 10 8 6 14 14 C 1.55398 * 102.90031 * 337.89642 * 4 3 2 15 15 C 1.47843 * 110.99640 * 239.15292 * 2 1 3 16 16 H 1.09001 * 110.37314 * 27.42672 * 15 2 1 17 17 C 1.50698 * 110.37839 * 265.19319 * 15 2 1 18 18 C 1.38669 * 120.41947 * 141.45398 * 17 15 2 19 19 C 1.38632 * 118.42091 * 180.02562 * 18 17 15 20 20 C 1.38234 * 119.15960 * 0.02562 * 19 18 17 21 21 N 1.31857 * 120.76365 * 359.97438 * 20 19 18 22 22 C 1.31884 * 121.72500 * 359.71198 * 21 20 19 23 23 H 1.09000 * 109.47341 * 60.12554 * 1 2 3 24 24 H 1.08994 * 109.47242 * 180.12898 * 1 2 3 25 25 H 1.09006 * 109.46953 * 300.12919 * 1 2 3 26 26 H 1.09002 * 109.88998 * 356.14887 * 3 2 1 27 27 H 1.09003 * 109.88733 * 117.17548 * 3 2 1 28 28 H 0.97001 * 119.99866 * 180.02562 * 9 8 6 29 29 H 1.08995 * 110.87020 * 277.39488 * 14 4 3 30 30 H 1.08997 * 111.02640 * 153.63364 * 14 4 3 31 31 H 1.07997 * 120.78976 * 359.97438 * 18 17 15 32 32 H 1.07999 * 120.42210 * 180.02562 * 19 18 17 33 33 H 1.07995 * 119.61622 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.61485 * 180.30501 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9182 1.5165 -1.2304 5 1 2.3783 1.9592 -2.0675 6 6 4.1399 2.3312 -0.8918 7 1 5.1224 1.8896 -0.9707 8 6 4.0035 3.6403 -0.4813 9 7 5.0696 4.3515 -0.1862 10 14 2.3041 4.4039 -0.3443 11 1 1.7696 4.1801 1.0230 12 1 2.3942 5.8625 -0.6080 13 1 1.3977 3.7760 -1.3390 14 6 3.3048 0.0443 -1.5438 15 6 1.9988 -0.7077 -1.1850 16 1 1.2880 -0.6519 -2.0095 17 6 2.2973 -2.1457 -0.8474 18 6 2.0318 -3.1518 -1.7640 19 6 2.3222 -4.4604 -1.4100 20 6 2.8623 -4.7169 -0.1637 21 7 3.1016 -3.7347 0.6828 22 6 2.8438 -2.4779 0.3776 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5159 0.8889 26 1 1.1756 2.0892 -0.0688 27 1 2.5674 1.5549 0.9119 28 1 4.9736 5.2724 0.1029 29 1 4.1302 -0.2834 -0.9119 30 1 3.5495 -0.0797 -2.5987 31 1 1.6082 -2.9216 -2.7304 32 1 2.1288 -5.2691 -2.0992 33 1 3.0917 -5.7335 0.1195 34 1 3.0578 -1.6997 1.0952 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027107938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:42 Heat of formation + Delta-G solvation = 21.807699 kcal Electronic energy + Delta-G solvation = -16192.494450 eV Core-core repulsion = 13703.297853 eV Total energy + Delta-G solvation = -2489.196597 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.28395 -39.63967 -35.16409 -33.78312 -32.89628 -32.50221 -29.31942 -27.29822 -25.64407 -24.48186 -23.77203 -21.50112 -21.32654 -18.80638 -17.85915 -17.47502 -16.90969 -16.28574 -15.92466 -15.43319 -15.02864 -14.73172 -14.67579 -14.31789 -14.04690 -13.85794 -13.55927 -13.01108 -12.87765 -12.62316 -12.39588 -12.10895 -12.08233 -11.66634 -11.54729 -11.12949 -10.76835 -10.60523 -10.31954 -9.75346 -9.27617 -8.31174 -6.35635 0.28227 0.44447 1.31300 1.32854 1.42037 2.30839 2.88773 3.02962 3.10212 3.61943 3.87596 3.95463 4.08520 4.14822 4.18527 4.26995 4.30969 4.46675 4.54093 4.63887 4.73118 4.77347 4.91996 4.94690 5.01437 5.07400 5.26838 5.30448 5.42667 5.48172 5.69296 5.87700 6.02796 6.21557 6.28556 6.70665 7.15422 7.29261 8.85807 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.040519 B = 0.007122 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.866536 B = 3930.487245 C = 4205.243416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.044 3.956 4 C -0.005 4.005 5 H 0.036 0.964 6 C -0.512 4.512 7 H 0.032 0.968 8 C 0.015 3.985 9 N -0.949 5.949 10 Si 0.940 3.060 11 H -0.265 1.265 12 H -0.292 1.292 13 H -0.245 1.245 14 C -0.097 4.097 15 C 0.119 3.881 16 H 0.079 0.921 17 C -0.121 4.121 18 C -0.077 4.077 19 C -0.165 4.165 20 C 0.077 3.923 21 N -0.520 5.520 22 C 0.108 3.892 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.266 0.734 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 -15.385 -4.094 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.084 4.084 4 C -0.025 4.025 5 H 0.054 0.946 6 C -0.550 4.550 7 H 0.051 0.949 8 C -0.182 4.182 9 N -0.589 5.589 10 Si 0.765 3.235 11 H -0.190 1.190 12 H -0.218 1.218 13 H -0.169 1.169 14 C -0.135 4.135 15 C 0.011 3.989 16 H 0.097 0.903 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.185 4.185 20 C -0.080 4.080 21 N -0.229 5.229 22 C -0.049 4.049 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.175 0.825 32 H 0.187 0.813 33 H 0.196 0.804 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.078 -15.661 -2.743 19.378 hybrid contribution -0.641 1.656 -1.042 2.059 sum -11.719 -14.004 -3.785 18.649 Atomic orbital electron populations 1.22562 0.86637 1.02398 1.01019 1.63367 1.08823 1.14046 1.39959 1.23186 0.96926 0.88175 1.00085 1.20336 0.94256 0.94037 0.93873 0.94615 1.21155 0.92757 0.96590 1.44536 0.94925 1.25865 1.00478 0.97546 0.94337 1.70047 1.31347 1.09998 1.47493 0.85946 0.80519 0.77065 0.79964 1.19006 1.21831 1.16882 1.22629 0.95899 0.94184 1.00772 1.21368 0.96233 0.89756 0.91584 0.90268 1.20731 1.00260 0.95546 0.95791 1.21802 0.96620 0.92309 0.99573 1.22436 0.99969 0.97760 0.98301 1.23309 0.94942 0.99048 0.90673 1.67717 1.17695 1.01069 1.36385 1.22494 0.94073 0.92786 0.95499 0.94971 0.90440 0.91211 0.94007 0.92534 0.92484 0.93085 0.90580 0.82536 0.81254 0.80419 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.12 127.69 1.16 1.76 16 2 N -0.54 -18.53 4.37 -890.98 -3.90 -22.42 16 3 C 0.04 1.83 4.73 86.65 0.41 2.24 16 4 C -0.01 -0.24 2.36 -10.27 -0.02 -0.27 16 5 H 0.04 1.60 7.37 -2.38 -0.02 1.58 16 6 C -0.51 -29.08 8.99 25.60 0.23 -28.85 16 7 H 0.03 2.07 8.03 -2.91 -0.02 2.05 16 8 C 0.02 0.87 5.46 84.65 0.46 1.33 16 9 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 10 Si 0.94 43.78 24.70 68.60 1.69 45.48 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 13 H -0.25 -10.42 6.37 99.48 0.63 -9.78 16 14 C -0.10 -3.73 5.91 32.07 0.19 -3.54 16 15 C 0.12 3.75 2.65 44.64 0.12 3.87 16 16 H 0.08 2.16 7.70 -2.39 -0.02 2.14 16 17 C -0.12 -3.48 5.03 -19.77 -0.10 -3.58 16 18 C -0.08 -1.66 9.84 22.47 0.22 -1.44 16 19 C -0.17 -3.06 10.11 22.36 0.23 -2.83 16 20 C 0.08 1.74 11.18 84.69 0.95 2.69 16 21 N -0.52 -16.02 10.36 -195.83 -2.03 -18.05 16 22 C 0.11 3.53 10.40 84.67 0.88 4.41 16 23 H 0.03 0.83 8.10 -2.39 -0.02 0.81 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 25 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.04 1.66 5.28 -2.39 -0.01 1.65 16 27 H 0.06 2.65 7.76 -2.39 -0.02 2.63 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.05 2.18 7.86 -2.39 -0.02 2.16 16 30 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.14 5.06 7.72 -2.91 -0.02 5.04 16 Total: -1.00 -67.68 276.49 1.79 -65.89 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.00 Total: 12.36 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.73 Total: -24.21 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -5.63 Total: -99.52 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.69 Total: 45.48 kcal Total: -67.68 1.79 -65.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027107938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.701 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds