Wall clock time and date at job start Mon Mar 30 2020 07:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21274 * 119.99741 * 2 1 4 4 C 1.46955 * 119.99993 * 180.02562 * 2 1 3 5 5 C 1.35075 * 125.35414 * 180.02562 * 4 2 1 6 6 C 1.50703 * 126.61126 * 359.96040 * 5 4 2 7 7 C 1.51100 * 106.77869 * 179.97438 * 5 4 2 8 8 C 1.52993 * 110.13090 * 119.22064 * 7 5 4 9 9 O 1.42902 * 110.12887 * 240.84097 * 7 5 4 10 10 C 1.42898 * 114.00186 * 179.06413 * 9 7 5 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 N 1.46782 * 106.15041 * 0.02995 * 7 5 4 20 20 C 1.34687 * 107.74381 * 359.94328 * 19 7 5 21 21 O 1.21562 * 124.97564 * 180.02562 * 20 19 7 22 22 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47072 * 300.00264 * 1 2 3 24 24 H 1.09008 * 109.46909 * 60.00253 * 1 2 3 25 25 H 1.09000 * 109.47022 * 270.00174 * 6 5 4 26 26 H 1.08996 * 109.47387 * 29.99805 * 6 5 4 27 27 H 1.09003 * 109.47051 * 150.00561 * 6 5 4 28 28 H 1.08998 * 109.47335 * 180.93157 * 8 7 5 29 29 H 1.08997 * 109.47492 * 300.93268 * 8 7 5 30 30 H 1.09002 * 109.47516 * 60.93329 * 8 7 5 31 31 H 1.09002 * 109.47259 * 300.00293 * 10 9 7 32 32 H 1.09001 * 109.47074 * 60.00315 * 10 9 7 33 33 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 34 34 H 0.96999 * 126.09516 * 179.97438 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2418 -1.2727 -0.0006 5 6 3.5867 -1.3987 -0.0001 6 6 4.5944 -0.2782 0.0002 7 6 3.8860 -2.8798 -0.0004 8 6 4.6780 -3.2567 -1.2538 9 8 4.6238 -3.2326 1.1715 10 6 4.9340 -4.6243 1.2660 11 6 5.7081 -4.8815 2.5332 12 1 5.9397 -4.0640 3.1998 13 6 6.1208 -6.1604 2.8414 14 7 5.8384 -7.1560 2.0298 15 14 7.0798 -6.4793 4.4124 16 1 7.2656 -5.2021 5.1468 17 1 6.3295 -7.4363 5.2647 18 1 8.4072 -7.0530 4.0743 19 7 2.5849 -3.5592 -0.0017 20 6 1.6272 -2.6122 -0.0009 21 8 0.4314 -2.8304 -0.0012 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 4.8377 -0.0080 -1.0274 26 1 4.1755 0.5871 0.5138 27 1 5.4990 -0.6032 0.5142 28 1 4.8737 -4.3290 -1.2513 29 1 4.1011 -2.9948 -2.1407 30 1 5.6239 -2.7149 -1.2627 31 1 4.0100 -5.2023 1.2815 32 1 5.5343 -4.9219 0.4063 33 1 6.1290 -8.0558 2.2464 34 1 2.4412 -4.5185 -0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027309256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:41 Heat of formation + Delta-G solvation = -112.444792 kcal Electronic energy + Delta-G solvation = -18945.167483 eV Core-core repulsion = 15843.292356 eV Total energy + Delta-G solvation = -3101.875127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.45712 -40.09214 -39.16188 -36.88787 -34.84421 -33.91355 -31.85842 -30.81580 -29.53159 -28.76643 -25.62378 -23.97039 -23.43660 -21.12610 -20.04895 -19.04101 -18.46446 -17.55583 -16.92491 -16.79198 -16.35601 -16.16005 -15.92045 -15.47479 -15.39432 -14.79600 -14.72787 -14.16099 -13.98683 -13.66154 -13.44064 -13.18586 -13.09276 -13.00188 -12.94119 -12.79435 -12.62292 -12.11972 -11.41967 -11.30507 -11.06806 -10.82432 -10.66825 -10.62192 -10.37014 -8.35930 -6.46990 -0.67140 1.00957 1.39643 1.40819 1.54321 1.94815 2.12492 2.29663 2.54350 2.95264 2.99787 3.25650 3.34479 3.71375 3.84005 4.23789 4.41221 4.48430 4.59995 4.63403 4.67334 4.75911 4.78965 4.93471 4.97432 5.14478 5.17812 5.22011 5.41463 5.51876 5.80421 5.88401 6.31222 6.40193 6.69720 6.94959 7.23778 8.75452 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.005441 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.773961 B = 5145.305567 C = 5344.955370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.428 3.572 3 O -0.476 6.476 4 C -0.292 4.292 5 C 0.060 3.940 6 C -0.115 4.115 7 C 0.312 3.688 8 C -0.171 4.171 9 O -0.383 6.383 10 C 0.207 3.793 11 C -0.549 4.549 12 H 0.060 0.940 13 C 0.014 3.986 14 N -0.924 5.924 15 Si 0.975 3.025 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.270 1.270 19 N -0.729 5.729 20 C 0.562 3.438 21 O -0.548 6.548 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.100 0.900 31 H -0.007 1.007 32 H 0.013 0.987 33 H 0.271 0.729 34 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 11.137 -7.068 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.308 3.692 3 O -0.354 6.354 4 C -0.296 4.296 5 C 0.057 3.943 6 C -0.170 4.170 7 C 0.187 3.813 8 C -0.229 4.229 9 O -0.300 6.300 10 C 0.133 3.867 11 C -0.587 4.587 12 H 0.079 0.921 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.799 3.201 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.393 5.393 20 C 0.351 3.649 21 O -0.428 6.428 22 H 0.113 0.887 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.142 0.858 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.011 0.989 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.760 11.573 -6.927 14.002 hybrid contribution 0.165 -1.593 0.635 1.723 sum -3.594 9.980 -6.292 12.333 Atomic orbital electron populations 1.22387 0.91097 1.07003 1.05758 1.21978 0.92760 0.84946 0.69500 1.90485 1.72609 1.33702 1.38591 1.22514 0.95292 0.96212 1.15578 1.24080 0.95044 0.94193 0.80954 1.21017 0.96620 0.93756 1.05640 1.21152 0.80985 0.89314 0.89805 1.22459 1.01512 1.03939 0.94985 1.88059 1.71909 1.29022 1.40991 1.19986 0.93940 0.75891 0.96917 1.21356 1.36101 0.94375 1.06854 0.92147 1.25796 0.96787 0.95082 1.00860 1.70027 1.46846 1.00805 1.38614 0.85240 0.78206 0.78418 0.78227 1.19003 1.20171 1.19554 1.46841 1.08008 1.09697 1.74746 1.18632 0.85482 0.86140 0.74629 1.90670 1.14861 1.85169 1.52130 0.88709 0.87654 0.86979 0.85773 0.88514 0.88828 0.91256 0.88842 0.88123 0.98898 0.96961 0.92006 0.73396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.60 10.28 71.24 0.73 -3.87 16 2 C 0.43 11.71 7.24 27.97 0.20 11.91 16 3 O -0.48 -13.87 15.34 -3.01 -0.05 -13.91 16 4 C -0.29 -8.83 6.12 -19.32 -0.12 -8.95 16 5 C 0.06 1.74 5.48 -17.05 -0.09 1.64 16 6 C -0.11 -2.55 9.78 71.24 0.70 -1.86 16 7 C 0.31 10.38 1.36 44.32 0.06 10.44 16 8 C -0.17 -4.62 8.64 71.98 0.62 -4.00 16 9 O -0.38 -16.52 10.12 -148.98 -1.51 -18.03 16 10 C 0.21 10.28 5.13 71.24 0.37 10.65 16 11 C -0.55 -30.36 9.43 25.60 0.24 -30.12 16 12 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 13 C 0.01 0.77 5.46 84.65 0.46 1.23 16 14 N -0.92 -51.97 13.29 21.45 0.28 -51.69 16 15 Si 0.98 42.33 29.54 68.60 2.03 44.36 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 N -0.73 -25.15 5.52 -542.87 -3.00 -28.14 16 20 C 0.56 19.37 8.26 86.66 0.72 20.09 16 21 O -0.55 -20.60 15.28 -3.91 -0.06 -20.66 16 22 H 0.09 2.50 5.05 -2.39 -0.01 2.49 16 23 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.11 1.98 8.14 -2.38 -0.02 1.97 16 25 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.10 2.27 6.34 -2.39 -0.02 2.25 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.10 6.56 -2.39 -0.02 2.09 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 31 H -0.01 -0.35 7.14 -2.39 -0.02 -0.37 16 32 H 0.01 0.63 6.44 -2.39 -0.02 0.62 16 33 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.42 14.61 8.22 -92.71 -0.76 13.85 16 Total: -1.00 -64.83 292.31 1.96 -62.86 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.37 Total: 18.04 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 3.89 Total: 7.17 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.71 Total: -79.83 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.61 Total: -52.60 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -64.83 1.96 -62.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027309256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.580 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds