Wall clock time and date at job start Mon Mar 30 2020 07:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21275 * 119.99796 * 2 1 4 4 C 1.46948 * 120.00020 * 180.02562 * 2 1 3 5 5 C 1.35078 * 125.35633 * 180.02562 * 4 2 1 6 6 C 1.50706 * 126.60900 * 359.97438 * 5 4 2 7 7 C 1.51101 * 106.78224 * 179.73391 * 5 4 2 8 8 C 1.52997 * 110.13109 * 241.10735 * 7 5 4 9 9 O 1.42898 * 110.13110 * 119.41445 * 7 5 4 10 10 C 1.42894 * 114.00016 * 185.00393 * 9 7 5 11 11 C 1.50703 * 109.47118 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99869 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99872 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00355 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99860 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47029 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47350 * 120.00020 * 15 13 11 18 18 H 1.48503 * 109.47394 * 240.00168 * 15 13 11 19 19 N 1.46795 * 106.08850 * 0.25891 * 7 5 4 20 20 C 1.34542 * 107.81961 * 0.02562 * 19 7 5 21 21 O 1.21567 * 124.98956 * 179.97438 * 20 19 7 22 22 H 1.08998 * 109.46851 * 270.00097 * 1 2 3 23 23 H 1.08997 * 109.46969 * 29.99675 * 1 2 3 24 24 H 1.09001 * 109.46955 * 150.00060 * 1 2 3 25 25 H 1.09001 * 109.46953 * 269.68598 * 6 5 4 26 26 H 1.09000 * 109.47318 * 29.68196 * 6 5 4 27 27 H 1.09000 * 109.47161 * 149.68827 * 6 5 4 28 28 H 1.09001 * 109.47045 * 59.99100 * 8 7 5 29 29 H 1.08996 * 109.47465 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46764 * 299.99631 * 8 7 5 31 31 H 1.09007 * 109.47071 * 299.99853 * 10 9 7 32 32 H 1.08993 * 109.47584 * 59.99868 * 10 9 7 33 33 H 0.97002 * 119.99761 * 179.97438 * 14 13 11 34 34 H 0.96998 * 126.08441 * 179.97438 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2418 -1.2726 -0.0006 5 6 3.5867 -1.3987 -0.0001 6 6 4.5944 -0.2781 0.0005 7 6 3.8860 -2.8797 0.0057 8 6 4.6707 -3.2534 1.2649 9 8 4.6293 -3.2359 -1.1617 10 6 4.8608 -4.6394 -1.2975 11 6 5.6492 -4.8990 -2.5554 12 1 5.9443 -4.0746 -3.1875 13 6 5.9946 -6.1889 -2.8985 14 7 5.6357 -7.1928 -2.1285 15 14 6.9725 -6.5107 -4.4573 16 1 7.2502 -5.2226 -5.1421 17 1 8.2556 -7.1723 -4.1091 18 1 6.1896 -7.3928 -5.3596 19 7 2.5841 -3.5579 0.0021 20 6 1.6273 -2.6121 -0.0056 21 8 0.4314 -2.8305 -0.0108 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 4.8419 -0.0115 -1.0271 26 1 4.1734 0.5890 0.5094 27 1 5.4969 -0.6013 0.5194 28 1 4.0816 -3.0042 2.1474 29 1 4.8803 -4.3230 1.2584 30 1 5.6090 -2.6991 1.2860 31 1 5.4228 -5.0000 -0.4359 32 1 3.9057 -5.1616 -1.3527 33 1 5.8785 -8.1003 -2.3702 34 1 2.4396 -4.5171 0.0040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027309259.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:42 Heat of formation + Delta-G solvation = -113.456898 kcal Electronic energy + Delta-G solvation = -18950.490990 eV Core-core repulsion = 15848.571974 eV Total energy + Delta-G solvation = -3101.919015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.46029 -40.10075 -39.13150 -36.87392 -34.84597 -33.91115 -31.89708 -30.82404 -29.51960 -28.76395 -25.60855 -24.00524 -23.44434 -21.12089 -20.01196 -19.04333 -18.46236 -17.52374 -16.99219 -16.78115 -16.33747 -16.18960 -15.95256 -15.46099 -15.34536 -14.81126 -14.65891 -14.15580 -13.97945 -13.73650 -13.32087 -13.19675 -13.12777 -13.01415 -12.94884 -12.79376 -12.65831 -12.12607 -11.41223 -11.33542 -11.11296 -10.82088 -10.67422 -10.63498 -10.35756 -8.36038 -6.47142 -0.67211 1.02081 1.39673 1.40787 1.54334 1.94693 2.12781 2.29508 2.54183 2.94567 2.99699 3.25601 3.34183 3.72522 3.83947 4.22505 4.41318 4.47771 4.61397 4.63046 4.65325 4.73261 4.77047 4.93297 4.96358 5.12747 5.17019 5.22596 5.41145 5.52425 5.78548 5.88492 6.31126 6.39136 6.69606 6.95075 7.23672 8.75390 Molecular weight = 253.11amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.005471 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.061879 B = 5116.278154 C = 5318.982157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.427 3.573 3 O -0.475 6.475 4 C -0.291 4.291 5 C 0.059 3.941 6 C -0.114 4.114 7 C 0.313 3.687 8 C -0.171 4.171 9 O -0.383 6.383 10 C 0.207 3.793 11 C -0.549 4.549 12 H 0.061 0.939 13 C 0.014 3.986 14 N -0.924 5.924 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.276 1.276 19 N -0.730 5.730 20 C 0.561 3.439 21 O -0.549 6.549 22 H 0.113 0.887 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.011 0.989 32 H -0.006 1.006 33 H 0.271 0.729 34 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 11.233 7.167 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.307 3.693 3 O -0.353 6.353 4 C -0.295 4.295 5 C 0.056 3.944 6 C -0.169 4.169 7 C 0.188 3.812 8 C -0.229 4.229 9 O -0.299 6.299 10 C 0.133 3.867 11 C -0.587 4.587 12 H 0.079 0.921 13 C -0.186 4.186 14 N -0.563 5.563 15 Si 0.799 3.201 16 H -0.190 1.190 17 H -0.196 1.196 18 H -0.202 1.202 19 N -0.394 5.394 20 C 0.350 3.650 21 O -0.429 6.429 22 H 0.131 0.869 23 H 0.119 0.881 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.028 0.972 32 H 0.012 0.988 33 H 0.080 0.920 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.428 11.672 7.029 14.050 hybrid contribution 0.140 -1.631 -0.625 1.752 sum -3.288 10.041 6.404 12.355 Atomic orbital electron populations 1.22223 0.90958 1.05620 1.06019 1.21969 0.92776 0.84956 0.69555 1.90488 1.72632 1.33643 1.38537 1.22521 0.95308 0.96208 1.15491 1.24083 0.95051 0.94258 0.80999 1.21006 0.96838 0.94004 1.05062 1.21180 0.80821 0.89278 0.89915 1.22461 1.01584 1.03974 0.94864 1.88057 1.71918 1.27906 1.42062 1.19966 0.94427 0.75640 0.96674 1.21355 1.35686 0.93378 1.08232 0.92087 1.25803 0.96821 0.95113 1.00832 1.70030 1.46835 0.99965 1.39499 0.85234 0.78194 0.78456 0.78167 1.18956 1.19571 1.20180 1.46824 1.08042 1.09734 1.74778 1.18603 0.85523 0.86123 0.74750 1.90722 1.14844 1.85445 1.51923 0.86921 0.88067 0.89383 0.87971 0.87759 0.87629 0.88916 0.91266 0.88025 0.97158 0.98847 0.92013 0.73411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.25 9.76 71.24 0.70 -3.56 16 2 C 0.43 11.65 7.24 27.97 0.20 11.85 16 3 O -0.47 -13.80 15.33 -3.01 -0.05 -13.85 16 4 C -0.29 -8.81 6.12 -19.32 -0.12 -8.93 16 5 C 0.06 1.70 5.48 -17.05 -0.09 1.61 16 6 C -0.11 -2.53 9.80 71.24 0.70 -1.83 16 7 C 0.31 10.41 1.36 44.32 0.06 10.47 16 8 C -0.17 -4.60 8.76 71.98 0.63 -3.97 16 9 O -0.38 -16.49 10.10 -148.98 -1.51 -17.99 16 10 C 0.21 10.33 5.17 71.24 0.37 10.69 16 11 C -0.55 -30.36 9.43 25.60 0.24 -30.12 16 12 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 13 C 0.01 0.74 5.46 84.65 0.46 1.21 16 14 N -0.92 -52.11 13.29 21.45 0.28 -51.83 16 15 Si 0.98 42.36 29.54 68.60 2.03 44.38 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 19 N -0.73 -25.33 5.41 -543.02 -2.94 -28.26 16 20 C 0.56 19.42 8.24 86.69 0.71 20.13 16 21 O -0.55 -20.75 15.63 -3.93 -0.06 -20.82 16 22 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.09 2.27 6.11 -2.39 -0.01 2.26 16 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.10 2.21 6.33 -2.39 -0.02 2.19 16 27 H 0.11 1.88 7.50 -2.39 -0.02 1.86 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.09 6.60 -2.39 -0.02 2.07 16 30 H 0.10 2.35 7.53 -2.39 -0.02 2.33 16 31 H 0.01 0.54 6.52 -2.38 -0.02 0.52 16 32 H -0.01 -0.33 7.01 -2.39 -0.02 -0.34 16 33 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.42 14.77 8.12 -92.71 -0.75 14.02 16 Total: -1.00 -64.89 291.85 2.00 -62.88 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.38 Total: 17.92 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 3.86 Total: 7.56 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.65 Total: -80.09 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -1.61 Total: -52.65 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -64.89 2.00 -62.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027309259.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.572 kcal (2) G-P(sol) polarization free energy of solvation -64.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds