Wall clock time and date at job start Mon Mar 30 2020 07:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46902 * 2 1 4 4 C 1.53003 * 109.46894 * 119.99896 * 2 1 3 5 5 C 1.53002 * 109.47063 * 185.00078 * 4 2 1 6 6 C 1.52997 * 109.47143 * 185.00181 * 5 4 2 7 7 C 1.53002 * 109.46817 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 5 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 O 1.45197 * 109.47419 * 240.00016 * 2 1 3 12 12 C 1.34661 * 117.00202 * 89.99718 * 11 2 1 13 13 O 1.21514 * 119.99610 * 0.02562 * 12 11 2 14 14 N 1.34773 * 120.00503 * 180.02562 * 12 11 2 15 15 C 1.37194 * 120.00154 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00068 * 359.97438 * 15 14 12 17 17 C 1.38886 * 119.99736 * 179.97438 * 15 14 12 18 18 N 1.31469 * 120.00119 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47078 * 60.00334 * 19 17 15 21 21 H 1.48509 * 109.47050 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47468 * 300.00272 * 19 17 15 23 23 H 1.08996 * 109.46930 * 299.99621 * 1 2 3 24 24 H 1.08998 * 109.46796 * 60.00537 * 1 2 3 25 25 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46927 * 65.00171 * 4 2 1 27 27 H 1.09000 * 109.47306 * 305.00113 * 4 2 1 28 28 H 1.09002 * 109.47067 * 305.00198 * 5 4 2 29 29 H 1.08993 * 109.47194 * 59.99677 * 6 5 4 30 30 H 1.09002 * 109.46695 * 299.99691 * 6 5 4 31 31 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 32 32 H 1.09004 * 109.46733 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 34 34 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 37 37 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 39 39 H 0.97005 * 119.99759 * 359.97438 * 14 12 11 40 40 H 0.96998 * 119.99560 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6133 1.3138 6 6 4.0852 -1.4383 2.4926 7 6 5.6100 -1.3298 2.5574 8 6 6.0095 0.1352 2.7444 9 6 5.4892 0.9603 1.5657 10 6 3.9645 0.8518 1.5007 11 8 2.0141 -0.6844 -1.1855 12 6 2.2179 0.0664 -2.2846 13 8 1.9977 1.2610 -2.2536 14 7 2.6661 -0.5070 -3.4190 15 6 2.8742 0.2582 -4.5385 16 1 2.6784 1.3199 -4.5110 17 6 3.3366 -0.3327 -5.7073 18 7 3.5753 -1.6251 -5.7406 19 14 3.6192 0.7089 -7.2319 20 1 4.6294 1.7563 -6.9355 21 1 4.1095 -0.1537 -8.3369 22 1 2.3431 1.3521 -7.6356 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7715 1.2056 27 1 1.6054 -0.2617 2.1370 28 1 3.9955 -0.9922 0.3869 29 1 3.8001 -2.4819 2.3596 30 1 3.6546 -1.0593 3.4194 31 1 6.0408 -1.7084 1.6306 32 1 5.9806 -1.9172 3.3975 33 1 5.5786 0.5139 3.6713 34 1 7.0958 0.2126 2.7901 35 1 5.7742 2.0039 1.6986 36 1 5.9201 0.5816 0.6388 37 1 3.5938 1.4392 0.6607 38 1 3.5335 1.2305 2.4276 39 1 2.8423 -1.4606 -3.4435 40 1 3.8986 -2.0376 -6.5568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028469908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:28 Heat of formation + Delta-G solvation = -143.968516 kcal Electronic energy + Delta-G solvation = -19677.773923 eV Core-core repulsion = 16683.053441 eV Total energy + Delta-G solvation = -2994.720483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23014 -39.67030 -37.79315 -35.98788 -34.60021 -33.27515 -31.72372 -31.45047 -27.31405 -26.98987 -23.90150 -23.27263 -22.24285 -21.16795 -20.58713 -20.23666 -18.99288 -17.49906 -16.91941 -16.45204 -16.22559 -15.74576 -15.38070 -15.09325 -15.04967 -14.64119 -14.28038 -13.93977 -13.57009 -13.39705 -13.13833 -13.07323 -12.95887 -12.64167 -12.57358 -12.46919 -12.10946 -12.00017 -11.85076 -11.77370 -11.62325 -11.44302 -11.26609 -11.18061 -10.83500 -10.73639 -10.15237 -8.49238 -6.03178 1.39923 1.42497 1.51814 1.79269 2.09918 2.40848 3.17813 3.60728 3.75968 3.85051 3.97900 4.05357 4.15907 4.20262 4.32946 4.45655 4.57724 4.60752 4.63854 4.66814 4.72765 4.82726 4.84016 4.92866 5.05135 5.10257 5.15902 5.21269 5.26387 5.32881 5.34765 5.37081 5.42026 5.50206 5.63319 5.66660 6.03014 6.43869 7.01470 7.38369 8.03852 8.69627 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.005250 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.916859 B = 5332.025351 C = 5926.035914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 H 0.065 0.935 4 C -0.100 4.100 5 C -0.089 4.089 6 C -0.105 4.105 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.123 4.123 10 C -0.115 4.115 11 O -0.377 6.377 12 C 0.589 3.411 13 O -0.644 6.644 14 N -0.554 5.554 15 C -0.330 4.330 16 H 0.087 0.913 17 C -0.013 4.013 18 N -0.923 5.923 19 Si 1.005 2.995 20 H -0.269 1.269 21 H -0.269 1.269 22 H -0.268 1.268 23 H 0.102 0.898 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.399 0.601 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 -0.508 17.292 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.137 4.137 5 C -0.108 4.108 6 C -0.142 4.142 7 C -0.160 4.160 8 C -0.149 4.149 9 C -0.161 4.161 10 C -0.152 4.152 11 O -0.292 6.292 12 C 0.342 3.658 13 O -0.540 6.540 14 N -0.199 5.199 15 C -0.458 4.458 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.564 5.564 19 Si 0.827 3.173 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.193 1.193 23 H 0.120 0.880 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.101 0.899 39 H 0.233 0.767 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.923 -0.108 17.238 17.263 hybrid contribution 0.197 0.071 -1.277 1.294 sum 1.120 -0.037 15.961 16.000 Atomic orbital electron populations 1.22188 0.93884 1.03195 1.02796 1.22921 0.94795 0.96908 0.81789 0.91740 1.21802 0.95482 1.01772 0.94638 1.21126 0.95082 0.95892 0.98694 1.21527 0.95527 0.99555 0.97626 1.21561 0.96032 0.96798 1.01565 1.21502 1.00606 0.94912 0.97896 1.21541 0.95569 1.00332 0.98621 1.21619 0.96211 0.96041 1.01356 1.86221 1.80844 1.41809 1.20295 1.18106 0.81840 0.83820 0.81999 1.90733 1.62495 1.15719 1.85096 1.40593 1.60764 1.11334 1.07169 1.19640 1.44639 0.93367 0.88173 0.89479 1.26167 0.95916 0.97480 1.01677 1.69738 1.45245 1.10901 1.30485 0.84831 0.78955 0.77499 0.76036 1.19390 1.19303 1.19302 0.87955 0.94859 0.90941 0.90187 0.86912 0.94309 0.91633 0.90017 0.93784 0.90273 0.90511 0.91638 0.91687 0.94523 0.94919 0.89866 0.76723 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 9.55 71.98 0.69 -4.13 16 2 C 0.09 3.13 2.43 30.60 0.07 3.21 16 3 H 0.06 2.49 5.36 -2.39 -0.01 2.48 16 4 C -0.10 -2.47 4.40 30.60 0.13 -2.33 16 5 C -0.09 -2.36 2.14 -10.79 -0.02 -2.38 16 6 C -0.11 -2.07 5.20 30.59 0.16 -1.91 16 7 C -0.12 -2.38 5.92 30.60 0.18 -2.20 16 8 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 9 C -0.12 -3.07 5.92 30.59 0.18 -2.89 16 10 C -0.11 -3.03 4.96 30.60 0.15 -2.88 16 11 O -0.38 -16.68 9.39 -55.70 -0.52 -17.20 16 12 C 0.59 31.52 8.68 129.79 1.13 32.65 16 13 O -0.64 -37.44 15.18 19.80 0.30 -37.14 16 14 N -0.55 -31.19 5.29 -432.97 -2.29 -33.48 16 15 C -0.33 -19.42 9.68 84.01 0.81 -18.60 16 16 H 0.09 5.32 7.16 -2.91 -0.02 5.30 16 17 C -0.01 -0.71 5.50 84.90 0.47 -0.24 16 18 N -0.92 -51.58 13.05 21.66 0.28 -51.29 16 19 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.33 7.69 -2.39 -0.02 1.31 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.03 1.08 6.46 -2.39 -0.02 1.06 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.40 22.01 8.01 -92.70 -0.74 21.26 16 40 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -67.45 321.08 4.20 -63.25 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.27 Total: 34.16 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 4.13 Total: -3.66 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.01 Total: -84.77 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.22 Total: -54.35 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.45 4.20 -63.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028469908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.717 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds