Wall clock time and date at job start Mon Mar 30 2020 07:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86797 * 119.99786 * 2 1 4 4 H 1.48507 * 109.47147 * 270.00168 * 3 2 1 5 5 H 1.48497 * 109.47244 * 30.00217 * 3 2 1 6 6 H 1.48501 * 109.47309 * 150.00243 * 3 2 1 7 7 C 1.40215 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.39376 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.39921 * 125.96050 * 180.02562 * 9 7 2 11 11 C 1.38888 * 106.79411 * 180.22755 * 10 9 7 12 12 C 1.38492 * 107.12671 * 359.64086 * 11 10 9 13 13 C 1.47148 * 125.66106 * 180.14103 * 12 11 10 14 14 C 1.39986 * 120.18677 * 310.00960 * 13 12 11 15 15 C 1.37809 * 119.82723 * 179.67542 * 14 13 12 16 16 C 1.38499 * 120.20874 * 0.62449 * 15 14 13 17 17 C 1.38389 * 120.38600 * 359.67741 * 16 15 14 18 18 C 1.38011 * 120.16445 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 120.10723 * 180.02562 * 18 17 16 20 20 O 1.34746 * 108.67388 * 0.36407 * 12 11 10 21 21 H 0.96999 * 120.00422 * 359.97438 * 1 2 3 22 22 H 1.08002 * 126.59991 * 359.95798 * 10 9 7 23 23 H 1.07997 * 126.43372 * 179.77489 * 11 10 9 24 24 H 1.07999 * 120.08295 * 0.02562 * 14 13 12 25 25 H 1.07995 * 119.89505 * 180.32337 * 15 14 13 26 26 H 1.07997 * 119.80688 * 179.68961 * 16 15 14 27 27 H 1.08004 * 119.91707 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0465 -1.4001 5 1 1.4391 2.6526 0.7001 6 1 3.5392 1.4403 0.7000 7 6 2.0088 -1.2143 -0.0005 8 1 3.0888 -1.2142 -0.0010 9 6 1.3120 -2.4213 -0.0005 10 6 1.8820 -3.6991 -0.0005 11 6 0.8312 -4.6073 -0.0058 12 6 -0.3428 -3.8727 -0.0006 13 6 -1.7042 -4.4310 -0.0006 14 6 -2.0619 -5.4139 -0.9309 15 6 -3.3370 -5.9366 -0.9199 16 6 -4.2680 -5.4832 -0.0003 17 6 -3.9258 -4.5073 0.9193 18 6 -2.6512 -3.9782 0.9270 19 17 -2.2232 -2.7545 2.0817 20 8 -0.0314 -2.5617 -0.0005 21 1 -0.4851 0.8400 0.0004 22 1 2.9362 -3.9340 -0.0012 23 1 0.9141 -5.6841 -0.0107 24 1 -1.3387 -5.7658 -1.6518 25 1 -3.6125 -6.6987 -1.6338 26 1 -5.2669 -5.8937 -0.0007 27 1 -4.6577 -4.1596 1.6333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028564272.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:45 Heat of formation + Delta-G solvation = -4.905241 kcal Electronic energy + Delta-G solvation = -15066.105436 eV Core-core repulsion = 12393.818512 eV Total energy + Delta-G solvation = -2672.286924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 248.034 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.14969 -39.79973 -37.18209 -35.65851 -33.28702 -32.63257 -31.58676 -30.18787 -26.57276 -23.74303 -23.36088 -21.57660 -21.25656 -19.40324 -18.23688 -17.12961 -16.65532 -16.45012 -15.64135 -15.56755 -14.89963 -14.64543 -14.33481 -14.13096 -13.27968 -13.15813 -12.99613 -12.95350 -12.53780 -12.36027 -12.29576 -12.24741 -11.84310 -11.55060 -11.34136 -10.28562 -9.99605 -9.66313 -8.89186 -8.75894 -6.41094 0.12024 0.34131 1.21169 1.36723 1.39302 1.53188 1.68945 2.14251 2.15902 2.69905 3.10533 3.20633 3.94201 4.09458 4.26994 4.44774 4.52716 4.54841 4.79382 4.99051 5.05202 5.16396 5.34041 5.39145 5.46623 5.53799 5.63808 5.95962 5.99946 6.25598 6.59765 6.68460 7.26810 8.23551 Molecular weight = 248.03amu Principal moments of inertia in cm(-1) A = 0.031067 B = 0.007377 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.047096 B = 3794.642815 C = 4297.631233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.023 3.977 3 Si 1.002 2.998 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.471 4.471 8 H 0.111 0.889 9 C 0.175 3.825 10 C -0.410 4.410 11 C -0.137 4.137 12 C -0.160 4.160 13 C 0.008 3.992 14 C -0.115 4.115 15 C -0.104 4.104 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.060 4.060 19 Cl -0.082 7.082 20 O -0.156 6.156 21 H 0.292 0.708 22 H 0.123 0.877 23 H 0.141 0.859 24 H 0.134 0.866 25 H 0.167 0.833 26 H 0.171 0.829 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -5.911 -0.464 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.196 4.196 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.500 4.500 8 H 0.129 0.871 9 C 0.122 3.878 10 C -0.430 4.430 11 C -0.156 4.156 12 C -0.208 4.208 13 C 0.007 3.993 14 C -0.134 4.134 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.133 4.133 18 C -0.087 4.087 19 Cl -0.053 7.053 20 O -0.053 6.053 21 H 0.103 0.897 22 H 0.141 0.859 23 H 0.158 0.842 24 H 0.152 0.848 25 H 0.185 0.815 26 H 0.189 0.811 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.169 -5.494 -0.353 9.851 hybrid contribution 0.852 0.767 0.279 1.180 sum -7.316 -4.726 -0.074 8.710 Atomic orbital electron populations 1.69867 1.09194 1.31229 1.32155 1.27166 0.95807 1.05375 0.91216 0.84904 0.78836 0.74373 0.79867 1.18115 1.19110 1.17432 1.19154 0.95321 0.88542 1.46996 0.87074 1.20195 0.79789 0.95283 0.92564 1.21469 0.98429 0.92036 1.31053 1.21506 0.91356 0.98640 1.04090 1.20497 0.93442 0.82524 1.24304 1.18030 0.88839 0.96957 0.95511 1.21448 0.98272 0.96653 0.97010 1.21511 0.91612 0.99791 0.99237 1.21579 1.01332 0.95991 0.94148 1.21266 0.93199 0.97854 1.01013 1.21564 0.96391 0.95656 0.95048 1.98362 1.93794 1.54413 1.58702 1.84527 1.23372 1.24117 1.73289 0.89720 0.85874 0.84163 0.84847 0.81511 0.81124 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.71 11.98 21.88 0.26 -43.45 15 2 C 0.02 1.18 5.50 85.33 0.47 1.65 15 3 Si 1.00 38.09 29.56 68.60 2.03 40.12 15 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 5 H -0.27 -9.69 7.11 99.48 0.71 -8.99 15 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 15 7 C -0.47 -26.19 9.30 23.02 0.21 -25.97 15 8 H 0.11 5.72 7.85 -2.91 -0.02 5.69 15 9 C 0.18 10.29 6.78 22.95 0.16 10.44 15 10 C -0.41 -22.10 10.90 22.83 0.25 -21.85 15 11 C -0.14 -6.81 10.74 22.49 0.24 -6.57 15 12 C -0.16 -8.30 6.06 24.67 0.15 -8.15 15 13 C 0.01 0.32 5.80 -20.07 -0.12 0.21 15 14 C -0.12 -3.87 9.71 22.59 0.22 -3.66 15 15 C -0.10 -2.53 10.03 22.23 0.22 -2.30 15 16 C -0.11 -2.59 10.04 22.37 0.22 -2.37 15 17 C -0.11 -3.41 9.82 22.25 0.22 -3.19 15 18 C -0.06 -2.40 6.36 22.66 0.14 -2.25 15 19 Cl -0.08 -3.59 27.45 -2.72 -0.07 -3.67 15 20 O -0.16 -9.18 8.18 -14.55 -0.12 -9.30 15 21 H 0.29 14.41 8.29 -92.71 -0.77 13.64 15 22 H 0.12 6.15 8.06 -2.91 -0.02 6.12 15 23 H 0.14 5.94 8.06 -2.91 -0.02 5.91 15 24 H 0.13 4.20 8.06 -2.91 -0.02 4.18 15 25 H 0.17 2.62 8.06 -2.91 -0.02 2.60 15 26 H 0.17 2.38 8.06 -2.91 -0.02 2.36 15 27 H 0.15 3.65 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -67.86 264.02 5.68 -62.19 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.19 Total: 18.13 kcal Atomic # 6 Polarization: -66.41 SS G_CDS: 2.39 Total: -64.02 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.26 Total: -43.45 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.12 Total: -9.30 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -0.07 Total: -3.67 kcal Total: -67.86 5.68 -62.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028564272.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.281 kcal (2) G-P(sol) polarization free energy of solvation -67.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds