Wall clock time and date at job start Mon Mar 30 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33477 * 125.38189 * 2 1 4 4 C 1.35152 * 108.42846 * 179.97438 * 3 2 1 5 5 N 1.36556 * 107.06860 * 359.74243 * 4 3 2 6 6 C 1.46501 * 126.50199 * 180.29754 * 5 4 3 7 7 C 1.53008 * 109.46990 * 265.13632 * 6 5 4 8 8 C 1.50702 * 109.46887 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00369 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99496 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99819 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99705 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47247 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46746 * 120.00410 * 12 10 8 15 15 H 1.48500 * 109.47249 * 240.00057 * 12 10 8 16 16 C 1.31671 * 125.38437 * 179.97438 * 2 1 3 17 17 C 1.47076 * 125.86187 * 0.02562 * 16 2 1 18 18 N 1.29539 * 120.00192 * 0.02659 * 17 16 2 19 19 O 1.41605 * 120.00029 * 180.02562 * 18 17 16 20 20 H 1.08994 * 109.47087 * 269.99605 * 1 2 3 21 21 H 1.08991 * 109.47268 * 30.00492 * 1 2 3 22 22 H 1.09003 * 109.46778 * 149.99790 * 1 2 3 23 23 H 1.07998 * 125.78751 * 359.96354 * 3 2 1 24 24 H 1.07998 * 126.46735 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47276 * 25.13281 * 6 5 4 26 26 H 1.09004 * 109.47144 * 145.14135 * 6 5 4 27 27 H 1.08994 * 109.46858 * 300.00308 * 7 6 5 28 28 H 1.09004 * 109.46766 * 60.00272 * 7 6 5 29 29 H 0.97003 * 119.99191 * 180.02562 * 11 10 8 30 30 H 1.08004 * 120.00246 * 180.02562 * 17 16 2 31 31 H 0.96696 * 114.00132 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.0882 0.0000 4 6 3.5307 0.6942 0.0006 5 7 3.5334 -0.6714 0.0068 6 6 4.7128 -1.5405 0.0158 7 6 5.0569 -1.9480 -1.4183 8 6 6.2697 -2.8425 -1.4090 9 1 6.7471 -3.0954 -0.4739 10 6 6.7699 -3.3380 -2.5946 11 7 6.1888 -3.0295 -3.7334 12 14 8.2736 -4.4461 -2.5832 13 1 8.7359 -4.6388 -1.1852 14 1 7.9227 -5.7626 -3.1740 15 1 9.3572 -3.8184 -3.3813 16 6 2.2275 -1.0735 0.0005 17 6 1.7546 -2.4662 0.0006 18 7 0.4841 -2.7188 -0.0004 19 8 0.0289 -4.0597 0.0003 20 1 -0.3633 -0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 1.8893 2.1104 -0.0006 24 1 4.3979 1.3378 0.0003 25 1 5.5554 -1.0050 0.4534 26 1 4.5025 -2.4322 0.6063 27 1 4.2144 -2.4833 -1.8560 28 1 5.2672 -1.0562 -2.0089 29 1 6.5406 -3.3785 -4.5673 30 1 2.4667 -3.2783 0.0014 31 1 -0.9340 -4.1482 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028767698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:31 Heat of formation + Delta-G solvation = 162.638175 kcal Electronic energy + Delta-G solvation = -15098.445505 eV Core-core repulsion = 12501.355693 eV Total energy + Delta-G solvation = -2597.089812 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.114 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.60791 -38.99141 -38.49338 -35.74719 -34.78408 -32.91335 -31.45483 -29.87503 -26.86568 -25.81172 -24.58032 -23.25806 -21.78699 -19.76689 -19.58326 -18.77162 -17.89673 -17.45329 -17.10318 -16.52609 -16.30559 -15.93643 -15.65163 -15.52005 -15.32702 -14.81115 -14.62965 -13.77275 -13.22306 -12.52849 -12.44477 -12.25915 -12.02813 -11.69592 -11.69021 -11.10049 -10.76575 -10.64011 -9.68585 -7.34774 -5.47404 -1.50031 -0.30154 -0.12204 0.40591 0.50791 0.98692 2.20945 2.35638 2.45612 2.47958 2.48985 2.62648 3.01779 3.22635 3.26806 3.32974 3.37083 3.51049 3.71775 3.93719 4.05639 4.10460 4.14118 4.47353 4.51110 4.60513 4.73908 5.68225 5.81005 5.85993 6.53447 6.77929 7.57822 8.26750 9.74977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.355 5.355 3 C -0.006 4.006 4 C 0.048 3.952 5 N -0.365 5.365 6 C 0.082 3.918 7 C 0.014 3.986 8 C -0.551 4.551 9 H 0.067 0.933 10 C 0.071 3.929 11 N -0.882 5.882 12 Si 0.903 3.097 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.277 1.277 16 C 0.309 3.691 17 C 0.153 3.847 18 N -0.300 5.300 19 O -0.364 6.364 20 H 0.110 0.890 21 H 0.116 0.884 22 H 0.124 0.876 23 H 0.221 0.779 24 H 0.226 0.774 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.027 0.973 28 H 0.033 0.967 29 H 0.272 0.728 30 H 0.176 0.824 31 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 11.639 11.464 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.027 5.027 3 C -0.141 4.141 4 C -0.089 4.089 5 N -0.040 5.040 6 C -0.034 4.034 7 C -0.024 4.024 8 C -0.589 4.589 9 H 0.085 0.915 10 C -0.135 4.135 11 N -0.518 5.518 12 Si 0.729 3.271 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.203 1.203 16 C 0.057 3.943 17 C -0.058 4.058 18 N -0.039 5.039 19 O -0.281 6.281 20 H 0.128 0.872 21 H 0.134 0.866 22 H 0.142 0.858 23 H 0.238 0.762 24 H 0.243 0.757 25 H 0.139 0.861 26 H 0.127 0.873 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.193 0.807 31 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -17.053 11.690 11.275 23.550 hybrid contribution 0.843 -1.031 -0.240 1.353 sum -16.210 10.659 11.035 22.319 Atomic orbital electron populations 1.23153 0.70649 1.08485 1.07102 1.42922 1.10955 1.05017 1.43779 1.22542 0.88839 0.94703 1.08004 1.23468 1.00056 0.82786 1.02541 1.46258 1.06334 1.08632 1.42727 1.23646 0.80694 0.92848 1.06186 1.19613 0.98798 0.98355 0.85629 1.20781 1.12501 1.31695 0.93949 0.91503 1.24986 0.97465 0.95869 0.95152 1.69887 1.40241 1.43334 0.98290 0.86342 0.81691 0.80224 0.78822 1.19308 1.20319 1.20254 1.19295 0.82064 0.88007 1.04915 1.22740 0.95316 0.90563 0.97161 1.75845 1.15544 1.04130 1.08342 1.88656 1.31071 1.14169 1.94166 0.87215 0.86557 0.85766 0.76210 0.75745 0.86126 0.87292 0.95453 0.94906 0.91796 0.80708 0.72912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.53 10.37 59.85 0.62 0.09 16 2 N -0.36 3.50 2.95 -122.69 -0.36 3.14 16 3 C -0.01 0.07 11.28 -17.93 -0.20 -0.14 16 4 C 0.05 -0.46 11.57 -16.55 -0.19 -0.65 16 5 N -0.36 2.32 2.79 -114.48 -0.32 2.01 16 6 C 0.08 -0.21 5.82 -4.04 -0.02 -0.23 16 7 C 0.01 0.07 5.30 -27.88 -0.15 -0.08 16 8 C -0.55 -5.92 9.11 -34.44 -0.31 -6.24 16 9 H 0.07 0.66 7.74 -52.49 -0.41 0.25 16 10 C 0.07 0.99 5.46 -17.82 -0.10 0.89 16 11 N -0.88 -13.80 13.29 55.43 0.74 -13.06 16 12 Si 0.90 10.75 29.54 -169.99 -5.02 5.73 16 13 H -0.27 -3.06 7.11 56.52 0.40 -2.66 16 14 H -0.28 -3.50 7.11 56.52 0.40 -3.10 16 15 H -0.28 -3.50 7.11 56.52 0.40 -3.10 16 16 C 0.31 -2.20 7.59 -154.64 -1.17 -3.38 16 17 C 0.15 -0.87 10.75 -14.94 -0.16 -1.03 16 18 N -0.30 1.75 9.15 32.03 0.29 2.04 16 19 O -0.36 1.80 14.95 -11.47 -0.17 1.62 16 20 H 0.11 -1.40 8.14 -51.93 -0.42 -1.82 16 21 H 0.12 -1.60 8.13 -51.93 -0.42 -2.02 16 22 H 0.12 -1.29 5.89 -51.93 -0.31 -1.60 16 23 H 0.22 -3.31 8.06 -52.49 -0.42 -3.74 16 24 H 0.23 -2.71 8.06 -52.49 -0.42 -3.14 16 25 H 0.12 -0.45 8.14 -51.93 -0.42 -0.88 16 26 H 0.11 -0.40 7.66 -51.93 -0.40 -0.80 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.27 4.15 8.31 -40.82 -0.34 3.81 16 30 H 0.18 -0.92 7.63 -52.48 -0.40 -1.32 16 31 H 0.42 -4.10 9.28 45.56 0.42 -3.67 16 LS Contribution 274.55 15.07 4.14 4.14 Total: 0.00 -23.77 274.55 -5.58 -29.35 By element: Atomic # 1 Polarization: -21.03 SS G_CDS: -3.18 Total: -24.21 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.69 Total: -10.76 kcal Atomic # 7 Polarization: -6.22 SS G_CDS: 0.35 Total: -5.87 kcal Atomic # 8 Polarization: 1.80 SS G_CDS: -0.17 Total: 1.62 kcal Atomic # 14 Polarization: 10.75 SS G_CDS: -5.02 Total: 5.73 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -23.77 -5.58 -29.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028767698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.985 kcal (2) G-P(sol) polarization free energy of solvation -23.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds