Wall clock time and date at job start Mon Mar 30 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33477 * 125.38189 * 2 1 4 4 C 1.35152 * 108.42846 * 179.97438 * 3 2 1 5 5 N 1.36556 * 107.06860 * 359.74243 * 4 3 2 6 6 C 1.46501 * 126.50199 * 180.29754 * 5 4 3 7 7 C 1.53008 * 109.46990 * 265.13632 * 6 5 4 8 8 C 1.50702 * 109.46887 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00369 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99496 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99819 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99705 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47247 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46746 * 120.00410 * 12 10 8 15 15 H 1.48500 * 109.47249 * 240.00057 * 12 10 8 16 16 C 1.31671 * 125.38437 * 179.97438 * 2 1 3 17 17 C 1.47076 * 125.86187 * 0.02562 * 16 2 1 18 18 N 1.29539 * 120.00192 * 0.02659 * 17 16 2 19 19 O 1.41605 * 120.00029 * 180.02562 * 18 17 16 20 20 H 1.08994 * 109.47087 * 269.99605 * 1 2 3 21 21 H 1.08991 * 109.47268 * 30.00492 * 1 2 3 22 22 H 1.09003 * 109.46778 * 149.99790 * 1 2 3 23 23 H 1.07998 * 125.78751 * 359.96354 * 3 2 1 24 24 H 1.07998 * 126.46735 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47276 * 25.13281 * 6 5 4 26 26 H 1.09004 * 109.47144 * 145.14135 * 6 5 4 27 27 H 1.08994 * 109.46858 * 300.00308 * 7 6 5 28 28 H 1.09004 * 109.46766 * 60.00272 * 7 6 5 29 29 H 0.97003 * 119.99191 * 180.02562 * 11 10 8 30 30 H 1.08004 * 120.00246 * 180.02562 * 17 16 2 31 31 H 0.96696 * 114.00132 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.0882 0.0000 4 6 3.5307 0.6942 0.0006 5 7 3.5334 -0.6714 0.0068 6 6 4.7128 -1.5405 0.0158 7 6 5.0569 -1.9480 -1.4183 8 6 6.2697 -2.8425 -1.4090 9 1 6.7471 -3.0954 -0.4739 10 6 6.7699 -3.3380 -2.5946 11 7 6.1888 -3.0295 -3.7334 12 14 8.2736 -4.4461 -2.5832 13 1 8.7359 -4.6388 -1.1852 14 1 7.9227 -5.7626 -3.1740 15 1 9.3572 -3.8184 -3.3813 16 6 2.2275 -1.0735 0.0005 17 6 1.7546 -2.4662 0.0006 18 7 0.4841 -2.7188 -0.0004 19 8 0.0289 -4.0597 0.0003 20 1 -0.3633 -0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 1.8893 2.1104 -0.0006 24 1 4.3979 1.3378 0.0003 25 1 5.5554 -1.0050 0.4534 26 1 4.5025 -2.4322 0.6063 27 1 4.2144 -2.4833 -1.8560 28 1 5.2672 -1.0562 -2.0089 29 1 6.5406 -3.3785 -4.5673 30 1 2.4667 -3.2783 0.0014 31 1 -0.9340 -4.1482 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028767698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:31 Heat of formation + Delta-G solvation = 149.130177 kcal Electronic energy + Delta-G solvation = -15099.031256 eV Core-core repulsion = 12501.355693 eV Total energy + Delta-G solvation = -2597.675563 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.114 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.88146 -38.46362 -37.99434 -35.53789 -34.99209 -32.91182 -31.04279 -29.39691 -26.99271 -25.25522 -24.20128 -23.22883 -21.28042 -19.26315 -19.12952 -18.40573 -17.96479 -16.94364 -16.65592 -16.54216 -16.05963 -15.63797 -15.09253 -15.02633 -14.97818 -14.54177 -14.26971 -13.73364 -13.46812 -13.02025 -12.75968 -12.21792 -12.19900 -11.92766 -11.57023 -11.45662 -11.28396 -10.69261 -10.06999 -8.36525 -6.45010 -0.89495 0.34034 0.74384 0.95853 1.23003 1.36369 1.45614 1.49711 1.57906 2.33037 2.87672 3.05174 3.24930 3.27082 3.90500 3.97685 4.14996 4.16227 4.17873 4.26261 4.51859 4.56189 4.69227 4.84759 5.12750 5.19784 5.27848 5.37245 5.50526 5.65653 5.97496 6.34585 6.73907 7.29074 8.73656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.342 5.342 3 C 0.018 3.982 4 C 0.039 3.961 5 N -0.378 5.378 6 C 0.106 3.894 7 C 0.014 3.986 8 C -0.536 4.536 9 H 0.078 0.922 10 C 0.018 3.982 11 N -0.924 5.924 12 Si 0.940 3.060 13 H -0.255 1.255 14 H -0.293 1.293 15 H -0.291 1.291 16 C 0.283 3.717 17 C 0.146 3.854 18 N -0.296 5.296 19 O -0.392 6.392 20 H 0.123 0.877 21 H 0.143 0.857 22 H 0.108 0.892 23 H 0.264 0.736 24 H 0.249 0.751 25 H 0.139 0.861 26 H 0.119 0.881 27 H 0.007 0.993 28 H 0.014 0.986 29 H 0.262 0.738 30 H 0.162 0.838 31 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.784 13.950 13.362 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.013 5.013 3 C -0.117 4.117 4 C -0.096 4.096 5 N -0.053 5.053 6 C -0.012 4.012 7 C -0.024 4.024 8 C -0.575 4.575 9 H 0.096 0.904 10 C -0.182 4.182 11 N -0.563 5.563 12 Si 0.768 3.232 13 H -0.179 1.179 14 H -0.219 1.219 15 H -0.217 1.217 16 C 0.032 3.968 17 C -0.065 4.065 18 N -0.035 5.035 19 O -0.310 6.310 20 H 0.141 0.859 21 H 0.162 0.838 22 H 0.126 0.874 23 H 0.280 0.720 24 H 0.265 0.735 25 H 0.157 0.843 26 H 0.137 0.863 27 H 0.025 0.975 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.179 0.821 31 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -18.111 13.988 13.205 26.421 hybrid contribution 1.086 -1.633 -0.766 2.105 sum -17.026 12.355 12.440 24.439 Atomic orbital electron populations 1.23387 0.69382 1.09006 1.08136 1.43162 1.11615 1.04638 1.41900 1.23324 0.87802 0.95662 1.04910 1.24158 1.01954 0.81399 1.02060 1.45716 1.05565 1.09513 1.44513 1.22890 0.82992 0.94638 1.00684 1.19340 0.95975 0.96320 0.90757 1.21456 1.12967 1.29734 0.93304 0.90388 1.25600 0.99244 0.97583 0.95809 1.69987 1.41954 1.45933 0.98464 0.85762 0.80041 0.78546 0.78879 1.17887 1.21927 1.21739 1.18974 0.82219 0.88081 1.07486 1.22835 0.95151 0.91586 0.96931 1.75917 1.15285 1.03285 1.09012 1.88614 1.32779 1.15277 1.94373 0.85863 0.83849 0.87375 0.72020 0.73527 0.84278 0.86305 0.97508 0.96779 0.92881 0.82105 0.71101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.98 10.37 127.77 1.32 0.35 16 2 N -0.34 7.32 2.95 -542.08 -1.60 5.72 16 3 C 0.02 -0.48 11.28 83.73 0.94 0.47 16 4 C 0.04 -0.84 11.57 83.25 0.96 0.12 16 5 N -0.38 5.09 2.79 -516.09 -1.44 3.65 16 6 C 0.11 -0.58 5.82 86.38 0.50 -0.08 16 7 C 0.01 0.16 5.30 29.85 0.16 0.32 16 8 C -0.54 -12.02 9.11 25.60 0.23 -11.79 16 9 H 0.08 1.50 7.74 -2.91 -0.02 1.48 16 10 C 0.02 0.53 5.46 84.66 0.46 0.99 16 11 N -0.92 -31.70 13.29 21.45 0.28 -31.42 16 12 Si 0.94 23.43 29.54 68.60 2.03 25.46 16 13 H -0.26 -5.64 7.11 99.48 0.71 -4.94 16 14 H -0.29 -7.86 7.11 99.48 0.71 -7.15 16 15 H -0.29 -7.76 7.11 99.48 0.71 -7.06 16 16 C 0.28 -4.08 7.59 136.17 1.03 -3.05 16 17 C 0.15 -1.46 10.75 87.35 0.94 -0.52 16 18 N -0.30 3.09 9.15 -52.58 -0.48 2.61 16 19 O -0.39 3.20 14.95 -38.80 -0.58 2.62 16 20 H 0.12 -3.38 8.14 -2.39 -0.02 -3.40 16 21 H 0.14 -4.36 8.13 -2.39 -0.02 -4.38 16 22 H 0.11 -2.27 5.89 -2.39 -0.01 -2.29 16 23 H 0.26 -9.20 8.06 -2.91 -0.02 -9.22 16 24 H 0.25 -6.65 8.06 -2.91 -0.02 -6.67 16 25 H 0.14 -1.27 8.14 -2.39 -0.02 -1.29 16 26 H 0.12 -0.90 7.66 -2.39 -0.02 -0.92 16 27 H 0.01 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.26 8.93 8.31 -92.71 -0.77 8.16 16 30 H 0.16 -1.29 7.63 -2.91 -0.02 -1.32 16 31 H 0.43 -7.81 9.28 -74.06 -0.69 -8.50 16 Total: 0.00 -56.97 274.55 5.22 -51.76 By element: Atomic # 1 Polarization: -47.65 SS G_CDS: 0.44 Total: -47.21 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 6.56 Total: -13.18 kcal Atomic # 7 Polarization: -16.21 SS G_CDS: -3.23 Total: -19.44 kcal Atomic # 8 Polarization: 3.20 SS G_CDS: -0.58 Total: 2.62 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: 2.03 Total: 25.46 kcal Total: -56.97 5.22 -51.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028767698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.888 kcal (2) G-P(sol) polarization free energy of solvation -56.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds