Wall clock time and date at job start Mon Mar 30 2020 07:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33477 * 125.38189 * 2 1 4 4 C 1.35152 * 108.42846 * 179.97438 * 3 2 1 5 5 N 1.36556 * 107.06860 * 359.74243 * 4 3 2 6 6 C 1.46501 * 126.50199 * 180.29754 * 5 4 3 7 7 C 1.50705 * 109.47019 * 265.13797 * 6 5 4 8 8 H 1.07998 * 119.99582 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00054 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99794 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47458 * 60.00002 * 11 9 7 13 13 H 1.48506 * 109.47216 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47095 * 299.99454 * 11 9 7 15 15 C 1.31671 * 125.38437 * 179.97438 * 2 1 3 16 16 C 1.47076 * 125.86187 * 0.02562 * 15 2 1 17 17 N 1.29539 * 120.00192 * 0.02659 * 16 15 2 18 18 O 1.41605 * 120.00029 * 180.02562 * 17 16 15 19 19 H 1.08994 * 109.47087 * 269.99605 * 1 2 3 20 20 H 1.08991 * 109.47268 * 30.00492 * 1 2 3 21 21 H 1.09003 * 109.46778 * 149.99790 * 1 2 3 22 22 H 1.07998 * 125.78751 * 359.96354 * 3 2 1 23 23 H 1.07998 * 126.46735 * 179.97438 * 4 3 2 24 24 H 1.09001 * 109.47276 * 25.13281 * 6 5 4 25 25 H 1.09004 * 109.47144 * 145.14135 * 6 5 4 26 26 H 0.96995 * 119.99776 * 180.02562 * 10 9 7 27 27 H 1.08004 * 120.00246 * 180.02562 * 16 15 2 28 28 H 0.96696 * 114.00132 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.0882 0.0000 4 6 3.5307 0.6942 0.0006 5 7 3.5334 -0.6714 0.0068 6 6 4.7128 -1.5405 0.0158 7 6 5.0518 -1.9418 -1.3968 8 1 4.4487 -1.5855 -2.2188 9 6 6.1311 -2.7647 -1.6395 10 7 6.8652 -3.1990 -0.6384 11 14 6.5516 -3.2616 -3.3903 12 1 6.8389 -2.0466 -4.1943 13 1 7.7470 -4.1426 -3.3814 14 1 5.4035 -3.9903 -3.9874 15 6 2.2275 -1.0735 0.0005 16 6 1.7546 -2.4662 0.0006 17 7 0.4841 -2.7188 -0.0004 18 8 0.0289 -4.0597 0.0003 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 1.8893 2.1104 -0.0006 23 1 4.3979 1.3378 0.0003 24 1 5.5554 -1.0050 0.4534 25 1 4.5025 -2.4322 0.6063 26 1 7.6247 -3.7776 -0.8092 27 1 2.4667 -3.2783 0.0014 28 1 -0.9340 -4.1482 -0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028769011.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:08 Heat of formation + Delta-G solvation = 159.093390 kcal Electronic energy + Delta-G solvation = -13651.205052 eV Core-core repulsion = 11209.499145 eV Total energy + Delta-G solvation = -2441.705906 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.098 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.26195 -38.74099 -37.99875 -35.45446 -34.50883 -32.21697 -30.61987 -28.67539 -25.76956 -25.15913 -23.89449 -21.66449 -19.53043 -19.25178 -18.88881 -17.83992 -17.28958 -16.86142 -16.47591 -16.07189 -15.63977 -15.40205 -15.25407 -15.10997 -14.41800 -13.84893 -13.51432 -12.77526 -12.26468 -12.11775 -12.07281 -11.82309 -11.65708 -11.01466 -10.48181 -10.08449 -7.75940 -5.97491 -1.18826 0.05687 0.17955 0.69203 0.80024 1.36210 2.12704 2.22716 2.27364 2.49653 2.77059 2.95600 3.04032 3.25679 3.40106 3.57003 3.62720 3.74318 3.76980 3.95436 4.35474 4.62643 4.82793 4.90632 5.15461 5.32384 5.87791 5.91396 6.23336 7.07107 7.81460 9.30890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.361 5.361 3 C -0.014 4.014 4 C 0.048 3.952 5 N -0.343 5.343 6 C 0.219 3.781 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.083 3.917 10 N -0.869 5.869 11 Si 0.915 3.085 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.270 1.270 15 C 0.302 3.698 16 C 0.167 3.833 17 N -0.311 5.311 18 O -0.371 6.371 19 H 0.106 0.894 20 H 0.112 0.888 21 H 0.122 0.878 22 H 0.217 0.783 23 H 0.222 0.778 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.284 0.716 27 H 0.176 0.824 28 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.540 9.554 4.555 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.033 5.033 3 C -0.149 4.149 4 C -0.090 4.090 5 N -0.016 5.016 6 C 0.104 3.896 7 C -0.622 4.622 8 H 0.091 0.909 9 C -0.127 4.127 10 N -0.502 5.502 11 Si 0.740 3.260 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.195 1.195 15 C 0.050 3.950 16 C -0.044 4.044 17 N -0.050 5.050 18 O -0.286 6.286 19 H 0.125 0.875 20 H 0.131 0.869 21 H 0.140 0.860 22 H 0.234 0.766 23 H 0.238 0.762 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.193 0.807 28 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -14.631 9.479 4.639 18.040 hybrid contribution 0.425 -0.765 -0.877 1.239 sum -14.206 8.715 3.763 17.085 Atomic orbital electron populations 1.23061 0.71157 1.08115 1.06837 1.42834 1.10660 1.05093 1.44700 1.22454 0.89005 0.94493 1.08920 1.23391 0.99635 0.83370 1.02622 1.46536 1.06666 1.08514 1.39873 1.20891 0.77384 0.89433 1.01853 1.20960 1.16538 1.35170 0.89509 0.90897 1.24928 0.94512 0.94015 0.99273 1.69810 1.17219 1.31308 1.31906 0.86233 0.78977 0.79343 0.81494 1.19317 1.20018 1.19452 1.19246 0.82336 0.87732 1.05713 1.22783 0.94989 0.90944 0.95696 1.75885 1.15689 1.03589 1.09878 1.88636 1.30700 1.14767 1.94450 0.87536 0.86915 0.85951 0.76607 0.76176 0.89859 0.90988 0.90573 0.80707 0.73279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.48 10.37 59.85 0.62 0.14 15 2 N -0.36 2.75 2.95 -122.69 -0.36 2.39 15 3 C -0.01 0.12 11.28 -17.93 -0.20 -0.08 15 4 C 0.05 -0.31 11.57 -16.55 -0.19 -0.51 15 5 N -0.34 0.93 2.77 -115.76 -0.32 0.60 15 6 C 0.22 0.59 5.63 -5.19 -0.03 0.56 15 7 C -0.58 -4.33 9.39 -34.44 -0.32 -4.65 15 8 H 0.07 0.53 7.81 -52.49 -0.41 0.12 15 9 C 0.08 0.86 5.46 -17.82 -0.10 0.76 15 10 N -0.87 -10.58 13.29 55.43 0.74 -9.84 15 11 Si 0.91 8.46 29.54 -169.99 -5.02 3.44 15 12 H -0.27 -2.54 7.11 56.52 0.40 -2.14 15 13 H -0.28 -2.85 7.11 56.52 0.40 -2.44 15 14 H -0.27 -2.53 7.11 56.52 0.40 -2.13 15 15 C 0.30 -1.31 7.59 -154.64 -1.17 -2.49 15 16 C 0.17 -0.53 10.75 -14.94 -0.16 -0.69 15 17 N -0.31 1.23 9.15 32.03 0.29 1.53 15 18 O -0.37 1.26 14.95 -11.47 -0.17 1.09 15 19 H 0.11 -1.16 8.14 -51.93 -0.42 -1.59 15 20 H 0.11 -1.37 8.13 -51.93 -0.42 -1.80 15 21 H 0.12 -1.08 5.89 -51.93 -0.31 -1.38 15 22 H 0.22 -2.82 8.06 -52.49 -0.42 -3.24 15 23 H 0.22 -1.96 8.06 -52.49 -0.42 -2.38 15 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 15 25 H 0.07 0.24 7.66 -51.93 -0.40 -0.16 15 26 H 0.28 3.46 8.31 -40.82 -0.34 3.12 15 27 H 0.18 -0.36 7.63 -52.48 -0.40 -0.76 15 28 H 0.42 -3.50 9.28 45.56 0.42 -3.07 15 LS Contribution 253.11 15.07 3.81 3.81 Total: 0.00 -16.99 253.11 -4.93 -21.91 By element: Atomic # 1 Polarization: -15.66 SS G_CDS: -2.34 Total: -18.00 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.56 Total: -6.94 kcal Atomic # 7 Polarization: -5.67 SS G_CDS: 0.35 Total: -5.32 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: -0.17 Total: 1.09 kcal Atomic # 14 Polarization: 8.46 SS G_CDS: -5.02 Total: 3.44 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -16.99 -4.93 -21.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028769011.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.008 kcal (2) G-P(sol) polarization free energy of solvation -16.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds