Wall clock time and date at job start Mon Mar 30 2020 07:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33477 * 125.38189 * 2 1 4 4 C 1.35152 * 108.42846 * 179.97438 * 3 2 1 5 5 N 1.36556 * 107.06860 * 359.74243 * 4 3 2 6 6 C 1.46501 * 126.50199 * 180.29754 * 5 4 3 7 7 C 1.50705 * 109.47019 * 265.13797 * 6 5 4 8 8 H 1.07998 * 119.99582 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00054 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99794 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47458 * 60.00002 * 11 9 7 13 13 H 1.48506 * 109.47216 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47095 * 299.99454 * 11 9 7 15 15 C 1.31671 * 125.38437 * 179.97438 * 2 1 3 16 16 C 1.47076 * 125.86187 * 0.02562 * 15 2 1 17 17 N 1.29539 * 120.00192 * 0.02659 * 16 15 2 18 18 O 1.41605 * 120.00029 * 180.02562 * 17 16 15 19 19 H 1.08994 * 109.47087 * 269.99605 * 1 2 3 20 20 H 1.08991 * 109.47268 * 30.00492 * 1 2 3 21 21 H 1.09003 * 109.46778 * 149.99790 * 1 2 3 22 22 H 1.07998 * 125.78751 * 359.96354 * 3 2 1 23 23 H 1.07998 * 126.46735 * 179.97438 * 4 3 2 24 24 H 1.09001 * 109.47276 * 25.13281 * 6 5 4 25 25 H 1.09004 * 109.47144 * 145.14135 * 6 5 4 26 26 H 0.96995 * 119.99776 * 180.02562 * 10 9 7 27 27 H 1.08004 * 120.00246 * 180.02562 * 16 15 2 28 28 H 0.96696 * 114.00132 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.0882 0.0000 4 6 3.5307 0.6942 0.0006 5 7 3.5334 -0.6714 0.0068 6 6 4.7128 -1.5405 0.0158 7 6 5.0518 -1.9418 -1.3968 8 1 4.4487 -1.5855 -2.2188 9 6 6.1311 -2.7647 -1.6395 10 7 6.8652 -3.1990 -0.6384 11 14 6.5516 -3.2616 -3.3903 12 1 6.8389 -2.0466 -4.1943 13 1 7.7470 -4.1426 -3.3814 14 1 5.4035 -3.9903 -3.9874 15 6 2.2275 -1.0735 0.0005 16 6 1.7546 -2.4662 0.0006 17 7 0.4841 -2.7188 -0.0004 18 8 0.0289 -4.0597 0.0003 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 1.8893 2.1104 -0.0006 23 1 4.3979 1.3378 0.0003 24 1 5.5554 -1.0050 0.4534 25 1 4.5025 -2.4322 0.6063 26 1 7.6247 -3.7776 -0.8092 27 1 2.4667 -3.2783 0.0014 28 1 -0.9340 -4.1482 -0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028769011.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:08 Heat of formation + Delta-G solvation = 151.521441 kcal Electronic energy + Delta-G solvation = -13651.533396 eV Core-core repulsion = 11209.499145 eV Total energy + Delta-G solvation = -2442.034251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.098 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.76247 -38.39780 -37.68831 -35.29309 -34.82582 -31.93991 -30.33356 -28.52118 -25.69046 -24.99289 -23.51828 -21.32343 -19.18959 -19.15650 -18.75538 -17.70591 -17.04266 -16.72288 -16.29039 -15.73545 -15.56285 -15.08150 -14.95139 -14.71130 -14.07769 -13.74506 -13.65464 -13.17254 -12.78351 -12.43243 -12.23480 -11.88492 -11.49847 -11.23909 -10.84747 -9.99916 -8.52583 -6.67748 -0.79984 0.48978 0.82210 1.03107 1.30838 1.34820 1.43200 1.47577 1.71653 2.24183 2.87991 2.97567 3.37294 3.43414 4.04197 4.05015 4.22717 4.29046 4.38966 4.69992 4.74663 4.85160 4.96841 5.24547 5.29243 5.39629 5.57110 5.60615 6.39020 6.42672 7.09210 8.53729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.344 5.344 3 C 0.022 3.978 4 C 0.032 3.968 5 N -0.364 5.364 6 C 0.235 3.765 7 C -0.562 4.562 8 H 0.073 0.927 9 C 0.042 3.958 10 N -0.906 5.906 11 Si 0.945 3.055 12 H -0.268 1.268 13 H -0.296 1.296 14 H -0.272 1.272 15 C 0.279 3.721 16 C 0.155 3.845 17 N -0.297 5.297 18 O -0.394 6.394 19 H 0.120 0.880 20 H 0.145 0.855 21 H 0.108 0.892 22 H 0.266 0.734 23 H 0.240 0.760 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.273 0.727 27 H 0.154 0.846 28 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.668 12.177 4.730 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.016 5.016 3 C -0.114 4.114 4 C -0.104 4.104 5 N -0.038 5.038 6 C 0.117 3.883 7 C -0.600 4.600 8 H 0.091 0.909 9 C -0.162 4.162 10 N -0.543 5.543 11 Si 0.771 3.229 12 H -0.193 1.193 13 H -0.222 1.222 14 H -0.197 1.197 15 C 0.028 3.972 16 C -0.056 4.056 17 N -0.036 5.036 18 O -0.312 6.312 19 H 0.138 0.862 20 H 0.163 0.837 21 H 0.127 0.873 22 H 0.282 0.718 23 H 0.256 0.744 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.171 0.829 28 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -16.835 12.115 4.794 21.287 hybrid contribution 0.915 -1.446 -0.937 1.951 sum -15.920 10.668 3.857 19.548 Atomic orbital electron populations 1.23357 0.69397 1.09006 1.07976 1.43116 1.11493 1.04446 1.42552 1.23266 0.87532 0.95598 1.05022 1.24036 1.01843 0.81735 1.02824 1.45902 1.05967 1.09531 1.42411 1.20138 0.79413 0.90078 0.98639 1.21319 1.14278 1.32191 0.92223 0.90855 1.25354 0.95674 0.95275 0.99910 1.69885 1.18266 1.33554 1.32545 0.85778 0.77748 0.78559 0.80773 1.19332 1.22162 1.19712 1.18912 0.82162 0.88057 1.08045 1.22753 0.94827 0.91673 0.96337 1.75938 1.14965 1.03022 1.09707 1.88609 1.32620 1.15521 1.94459 0.86194 0.83705 0.87329 0.71808 0.74413 0.90380 0.92011 0.91727 0.82934 0.71216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.92 10.37 127.77 1.32 0.41 15 2 N -0.34 6.01 2.95 -542.08 -1.60 4.41 15 3 C 0.02 -0.47 11.28 83.73 0.94 0.48 15 4 C 0.03 -0.48 11.57 83.25 0.96 0.49 15 5 N -0.36 1.97 2.77 -520.16 -1.44 0.53 15 6 C 0.23 1.61 5.63 85.63 0.48 2.09 15 7 C -0.56 -9.10 9.39 25.60 0.24 -8.86 15 8 H 0.07 1.12 7.81 -2.91 -0.02 1.10 15 9 C 0.04 0.98 5.46 84.65 0.46 1.44 15 10 N -0.91 -24.65 13.29 21.45 0.28 -24.36 15 11 Si 0.94 19.00 29.54 68.60 2.03 21.03 15 12 H -0.27 -5.25 7.11 99.48 0.71 -4.55 15 13 H -0.30 -6.83 7.11 99.48 0.71 -6.12 15 14 H -0.27 -5.41 7.11 99.48 0.71 -4.70 15 15 C 0.28 -2.47 7.59 136.17 1.03 -1.43 15 16 C 0.16 -0.77 10.75 87.35 0.94 0.17 15 17 N -0.30 2.15 9.15 -52.58 -0.48 1.67 15 18 O -0.39 2.25 14.95 -38.80 -0.58 1.67 15 19 H 0.12 -2.95 8.14 -2.39 -0.02 -2.97 15 20 H 0.14 -4.14 8.13 -2.39 -0.02 -4.16 15 21 H 0.11 -2.05 5.89 -2.39 -0.01 -2.07 15 22 H 0.27 -8.45 8.06 -2.91 -0.02 -8.47 15 23 H 0.24 -4.70 8.06 -2.91 -0.02 -4.72 15 24 H 0.08 0.65 8.14 -2.39 -0.02 0.63 15 25 H 0.06 0.57 7.66 -2.39 -0.02 0.55 15 26 H 0.27 7.59 8.31 -92.71 -0.77 6.82 15 27 H 0.15 -0.16 7.63 -2.91 -0.02 -0.18 15 28 H 0.43 -6.99 9.28 -74.06 -0.69 -7.68 15 Total: 0.00 -41.87 253.11 5.08 -36.79 By element: Atomic # 1 Polarization: -37.01 SS G_CDS: 0.48 Total: -36.53 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.39 Total: -5.22 kcal Atomic # 7 Polarization: -14.51 SS G_CDS: -3.24 Total: -17.75 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: -0.58 Total: 1.67 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: 2.03 Total: 21.03 kcal Total: -41.87 5.08 -36.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028769011.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.314 kcal (2) G-P(sol) polarization free energy of solvation -41.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds