Wall clock time and date at job start Mon Mar 30 2020 07:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.28013 * 1 3 3 N 1.40101 * 120.00072 * 2 1 4 4 C 1.46501 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50698 * 109.46840 * 269.99977 * 4 3 2 6 6 H 1.07997 * 120.00536 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99748 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00224 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47520 * 59.99572 * 9 7 5 11 11 H 1.48498 * 109.46916 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46871 * 299.99338 * 9 7 5 13 13 C 1.37743 * 120.00022 * 179.97438 * 3 2 1 14 14 N 1.30883 * 124.96797 * 0.02562 * 13 3 2 15 15 C 1.36083 * 108.70469 * 180.02562 * 14 13 3 16 16 C 1.39575 * 133.66579 * 180.02562 * 15 14 13 17 17 C 1.37753 * 119.73286 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.39375 * 0.02562 * 17 16 15 19 19 C 1.38021 * 120.46513 * 359.97311 * 18 17 16 20 20 C 1.38541 * 119.89909 * 0.02562 * 19 18 17 21 21 O 1.34501 * 124.96714 * 180.02562 * 13 3 2 22 22 H 1.08004 * 119.99932 * 180.02562 * 1 2 3 23 23 H 1.07997 * 120.00056 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47153 * 29.99831 * 4 3 2 25 25 H 1.08995 * 109.47113 * 149.99903 * 4 3 2 26 26 H 0.96993 * 119.99951 * 179.97438 * 8 7 5 27 27 H 1.08006 * 120.13534 * 359.94811 * 16 15 14 28 28 H 1.08000 * 119.80818 * 180.02562 * 17 16 15 29 29 H 1.08003 * 119.76625 * 179.70459 * 18 17 16 30 30 H 1.08005 * 120.05376 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.2801 0.0000 0.0000 3 7 1.9806 1.2133 0.0000 4 6 1.2482 2.4820 0.0006 5 6 0.9965 2.9173 -1.4201 6 1 1.3474 2.3100 -2.2412 7 6 0.3191 4.0916 -1.6715 8 7 -0.1078 4.8316 -0.6716 9 14 0.0065 4.6309 -3.4324 10 1 -0.7971 3.5964 -4.1318 11 1 -0.7359 5.9170 -3.4319 12 1 1.3036 4.8078 -4.1335 13 6 3.3581 1.2133 0.0005 14 7 4.1082 0.1407 0.0006 15 6 5.4146 0.5218 0.0018 16 6 6.6224 -0.1776 0.0019 17 6 7.8131 0.5153 0.0027 18 6 7.8179 1.9018 0.0040 19 6 6.6306 2.6057 0.0038 20 6 5.4241 1.9248 0.0030 21 8 4.1289 2.3155 0.0011 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 0.2960 2.3516 0.5147 25 1 1.8374 3.2415 0.5143 26 1 -0.5840 5.6578 -0.8485 27 1 6.6236 -1.2576 0.0017 28 1 8.7484 -0.0247 0.0024 29 1 8.7572 2.4348 0.0095 30 1 6.6421 3.6857 0.0053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029415478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:42 Heat of formation + Delta-G solvation = 78.247466 kcal Electronic energy + Delta-G solvation = -16875.290593 eV Core-core repulsion = 14059.056262 eV Total energy + Delta-G solvation = -2816.234331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.07751 -39.38619 -38.57340 -35.60157 -35.17746 -33.60324 -31.51258 -30.53996 -28.90536 -25.52428 -24.76621 -23.60102 -22.83939 -21.32442 -19.12235 -18.87602 -18.77677 -18.05925 -17.80269 -17.04294 -16.20748 -15.70596 -15.11951 -14.98731 -14.63308 -14.54253 -13.96807 -13.61446 -13.40504 -13.08372 -13.01760 -12.73915 -12.42266 -12.40139 -12.34920 -11.83879 -11.29344 -10.94320 -10.80024 -10.38281 -9.68113 -8.67870 -8.31654 -6.58117 -0.13374 0.31684 0.58154 1.19575 1.33319 1.34823 1.43927 1.83138 2.13700 2.30280 2.78744 2.89949 3.27387 3.69114 4.00407 4.17078 4.30546 4.40787 4.44491 4.51428 4.71559 4.83149 4.84677 5.12606 5.18496 5.29059 5.44353 5.46798 5.48824 5.73536 5.86528 6.00993 6.46807 6.61560 7.09169 7.26745 8.67038 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.006857 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.067038 B = 4082.563860 C = 4812.626779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.259 5.259 3 N -0.429 5.429 4 C 0.239 3.761 5 C -0.561 4.561 6 H 0.045 0.955 7 C 0.028 3.972 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.279 1.279 13 C 0.518 3.482 14 N -0.550 5.550 15 C 0.027 3.973 16 C -0.096 4.096 17 C -0.095 4.095 18 C -0.102 4.102 19 C -0.092 4.092 20 C -0.054 4.054 21 O -0.248 6.248 22 H 0.223 0.777 23 H 0.105 0.895 24 H 0.053 0.947 25 H 0.018 0.982 26 H 0.275 0.725 27 H 0.145 0.855 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.338 -6.174 1.337 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 N -0.059 5.059 3 N -0.237 5.237 4 C 0.118 3.882 5 C -0.600 4.600 6 H 0.063 0.937 7 C -0.174 4.174 8 N -0.551 5.551 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.194 1.194 12 H -0.205 1.205 13 C 0.217 3.783 14 N -0.291 5.291 15 C -0.085 4.085 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.111 4.111 20 C -0.104 4.104 21 O -0.139 6.139 22 H 0.239 0.761 23 H 0.123 0.877 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.163 0.837 28 H 0.197 0.803 29 H 0.199 0.801 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.769 -6.987 1.407 12.914 hybrid contribution -1.280 2.023 -0.722 2.501 sum 9.489 -4.964 0.685 10.731 Atomic orbital electron populations 1.28143 0.90698 1.06180 0.92285 1.74326 1.12449 1.04703 1.14451 1.46943 0.97705 1.05315 1.73765 1.19494 0.92578 0.78369 0.97765 1.21433 1.38578 1.08150 0.91802 0.93705 1.25710 0.94174 0.95393 1.02104 1.69984 1.37501 1.14600 1.33042 0.85483 0.78398 0.78269 0.78848 1.18729 1.19409 1.20459 1.20938 0.85605 0.79336 0.92424 1.71103 1.00912 1.24951 1.32178 1.20419 0.92639 0.91696 1.03772 1.20585 0.88173 1.00902 1.01946 1.21505 0.97854 0.94348 0.97645 1.21427 0.96945 0.94453 0.99201 1.20303 0.86941 1.01118 1.02708 1.20822 0.82920 0.95853 1.10771 1.84480 1.16906 1.34907 1.77593 0.76103 0.87727 0.92965 0.96438 0.91603 0.83687 0.80282 0.80071 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.06 15.35 130.80 2.01 4.07 16 2 N -0.26 -11.14 11.27 -60.37 -0.68 -11.82 16 3 N -0.43 -21.53 3.57 -465.58 -1.66 -23.19 16 4 C 0.24 12.76 4.74 85.63 0.41 13.17 16 5 C -0.56 -31.65 9.39 25.60 0.24 -31.41 16 6 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 7 C 0.03 1.54 5.46 84.66 0.46 2.00 16 8 N -0.91 -51.45 13.29 21.45 0.28 -51.16 16 9 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 10 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.52 26.39 8.54 179.27 1.53 27.92 16 14 N -0.55 -26.35 11.19 -306.36 -3.43 -29.78 16 15 C 0.03 1.12 7.23 39.31 0.28 1.41 16 16 C -0.10 -2.83 10.10 22.48 0.23 -2.60 16 17 C -0.09 -1.95 10.02 22.25 0.22 -1.72 16 18 C -0.10 -2.13 10.03 22.32 0.22 -1.90 16 19 C -0.09 -2.77 10.06 22.29 0.22 -2.55 16 20 C -0.05 -2.23 7.42 22.84 0.17 -2.06 16 21 O -0.25 -12.47 10.14 -14.35 -0.15 -12.62 16 22 H 0.22 4.45 8.06 -2.91 -0.02 4.42 16 23 H 0.11 3.76 5.87 -2.91 -0.02 3.75 16 24 H 0.05 2.71 6.19 -2.39 -0.01 2.69 16 25 H 0.02 1.03 7.66 -2.39 -0.02 1.01 16 26 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -74.23 274.78 3.55 -70.68 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.16 Total: 6.51 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.00 Total: 6.31 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -5.49 Total: -115.95 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.15 Total: -12.62 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.23 3.55 -70.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029415478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.927 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds