Wall clock time and date at job start Mon Mar 30 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47100 * 184.36997 * 4 3 2 6 6 N 1.46496 * 109.47039 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00078 * 272.69237 * 6 5 4 8 8 H 1.08008 * 120.00010 * 176.64612 * 7 6 5 9 9 C 1.38808 * 120.00001 * 356.64955 * 7 6 5 10 10 N 1.31619 * 120.00141 * 29.94091 * 9 7 6 11 11 Si 1.86800 * 119.99852 * 209.94414 * 9 7 6 12 12 H 1.48500 * 109.47200 * 84.99219 * 11 9 7 13 13 H 1.48508 * 109.46894 * 204.98773 * 11 9 7 14 14 H 1.48499 * 109.47234 * 324.98907 * 11 9 7 15 15 C 1.46505 * 120.00163 * 92.69464 * 6 5 4 16 16 C 1.50698 * 109.47332 * 269.99997 * 15 6 5 17 17 C 1.38235 * 119.99874 * 89.99673 * 16 15 6 18 18 C 1.38239 * 119.99870 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99668 * 359.97438 * 18 17 16 20 20 C 1.38226 * 120.00450 * 0.28273 * 19 18 17 21 21 C 1.38234 * 120.00038 * 269.97943 * 16 15 6 22 22 H 1.09004 * 109.47389 * 175.63395 * 1 2 3 23 23 H 1.09004 * 109.47250 * 295.63274 * 1 2 3 24 24 H 1.09000 * 109.47292 * 55.63734 * 1 2 3 25 25 H 1.08997 * 109.47553 * 64.36112 * 4 3 2 26 26 H 1.09006 * 109.46883 * 304.36266 * 4 3 2 27 27 H 1.08990 * 109.47424 * 59.99810 * 5 4 3 28 28 H 1.09000 * 109.46451 * 299.99784 * 5 4 3 29 29 H 0.97001 * 119.99926 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.47296 * 149.99400 * 15 6 5 31 31 H 1.09000 * 109.47026 * 30.00172 * 15 6 5 32 32 H 1.07990 * 120.00403 * 359.97438 * 17 16 15 33 33 H 1.08001 * 120.00224 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99528 * 180.02562 * 19 18 17 35 35 H 1.08006 * 120.00584 * 179.72728 * 20 19 18 36 36 H 1.07999 * 120.00148 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6267 1.4406 0.1099 6 7 6.0916 1.4419 0.1105 7 6 6.7760 1.2968 1.2877 8 1 7.8547 1.2433 1.2822 9 6 6.0833 1.2185 2.4881 10 7 4.8720 0.7042 2.5166 11 14 6.8702 1.8429 4.0630 12 1 6.6366 3.3042 4.1874 13 1 6.2687 1.1446 5.2275 14 1 8.3306 1.5764 4.0261 15 6 6.8246 1.5983 -1.1483 16 6 7.0772 0.2420 -1.7545 17 6 6.1565 -0.3075 -2.6270 18 6 6.3884 -1.5515 -3.1835 19 6 7.5414 -2.2456 -2.8678 20 6 8.4596 -1.6986 -1.9913 21 6 8.2298 -0.4526 -1.4384 22 1 -0.3634 -1.0247 -0.0782 23 1 -0.3634 0.4446 0.9265 24 1 -0.3634 0.5800 -0.8483 25 1 4.4818 -0.4425 -0.9264 26 1 4.4818 -0.5779 0.8484 27 1 4.2630 1.8848 1.0363 28 1 4.2628 2.0203 -0.7384 29 1 4.3879 0.6498 3.3554 30 1 7.7765 2.0932 -0.9555 31 1 6.2353 2.2011 -1.8393 32 1 5.2559 0.2350 -2.8739 33 1 5.6689 -1.9810 -3.8648 34 1 7.7229 -3.2174 -3.3029 35 1 9.3583 -2.2429 -1.7412 36 1 8.9495 -0.0230 -0.7573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031899073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:58 Heat of formation + Delta-G solvation = 82.123542 kcal Electronic energy + Delta-G solvation = -17025.484303 eV Core-core repulsion = 14476.102968 eV Total energy + Delta-G solvation = -2549.381335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.09536 -37.88740 -35.20920 -33.82830 -32.40005 -31.62942 -31.15551 -28.21430 -27.27704 -25.04764 -23.31017 -22.90019 -21.65702 -18.66090 -17.68020 -17.04762 -16.96656 -15.97731 -15.91342 -15.61968 -15.07391 -14.72800 -14.55872 -14.26815 -14.15327 -13.88365 -13.76694 -13.47192 -13.30717 -12.98725 -12.73656 -12.47548 -12.03421 -11.96080 -11.82827 -11.71150 -11.61709 -10.60955 -10.42144 -10.14624 -9.64267 -9.47196 -8.90183 -7.84758 -5.07557 0.62952 0.65100 1.47742 1.52832 1.57786 1.98155 2.02574 2.54241 3.02902 3.24969 3.58452 3.97858 4.10104 4.19485 4.29425 4.38963 4.55988 4.62695 4.77740 4.84465 4.86398 4.91296 4.93648 4.98881 5.03818 5.21190 5.29617 5.30562 5.31963 5.60962 5.71598 5.72585 5.77583 5.94848 5.96248 6.28034 6.31199 6.98248 7.18025 7.89312 8.30475 9.17118 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.010274 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.721222 B = 2724.722873 C = 4446.199955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.252 4.252 3 C -0.183 4.183 4 C -0.008 4.008 5 C 0.187 3.813 6 N -0.600 5.600 7 C -0.255 4.255 8 H 0.078 0.922 9 C -0.043 4.043 10 N -0.907 5.907 11 Si 0.946 3.054 12 H -0.291 1.291 13 H -0.303 1.303 14 H -0.274 1.274 15 C 0.179 3.821 16 C -0.100 4.100 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.123 4.123 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.245 0.755 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -2.843 -9.887 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.253 4.253 3 C -0.183 4.183 4 C -0.047 4.047 5 C 0.061 3.939 6 N -0.320 5.320 7 C -0.384 4.384 8 H 0.096 0.904 9 C -0.239 4.239 10 N -0.554 5.554 11 Si 0.776 3.224 12 H -0.219 1.219 13 H -0.230 1.230 14 H -0.199 1.199 15 C 0.053 3.947 16 C -0.103 4.103 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.142 4.142 22 H 0.109 0.891 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.734 -2.811 -9.734 10.159 hybrid contribution 0.365 0.106 1.269 1.324 sum -0.369 -2.705 -8.466 8.895 Atomic orbital electron populations 1.18930 0.81858 1.03795 1.03632 1.23349 0.95276 1.02846 1.03793 1.23361 0.94757 1.00511 0.99712 1.19402 0.83053 1.01561 1.00681 1.20747 0.82153 0.92690 0.98305 1.44538 1.01489 1.83604 1.02393 1.19452 0.91185 1.43500 0.84291 0.90379 1.25303 0.97257 1.01489 0.99830 1.70363 1.14673 1.45003 1.25342 0.85586 0.78224 0.78267 0.80352 1.21884 1.23025 1.19905 1.20021 0.96636 0.91552 0.86492 1.21036 0.94180 0.99896 0.95216 1.21081 0.98635 0.96774 0.97950 1.21363 0.98120 0.94730 1.00543 1.21347 0.94481 1.00646 0.98955 1.21370 1.00373 0.95338 0.97614 1.21127 0.97604 0.95923 0.99556 0.89109 0.89878 0.88896 0.92320 0.90102 0.92093 0.95874 0.94536 0.92028 0.91876 0.86809 0.84534 0.83933 0.84624 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.68 10.32 70.18 0.72 0.04 16 2 C -0.25 -9.90 14.13 31.13 0.44 -9.46 16 3 C -0.18 -8.32 13.34 31.13 0.42 -7.90 16 4 C -0.01 -0.40 5.47 28.79 0.16 -0.24 16 5 C 0.19 9.14 4.95 86.38 0.43 9.56 16 6 N -0.60 -28.98 2.52 -706.35 -1.78 -30.76 16 7 C -0.26 -13.48 9.68 84.03 0.81 -12.67 16 8 H 0.08 4.04 7.99 -2.91 -0.02 4.02 16 9 C -0.04 -2.36 4.97 84.86 0.42 -1.94 16 10 N -0.91 -51.61 8.37 21.65 0.18 -51.43 16 11 Si 0.95 44.56 29.65 68.60 2.03 46.59 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 15 C 0.18 7.10 5.84 85.63 0.50 7.60 16 16 C -0.10 -3.75 5.41 -19.87 -0.11 -3.86 16 17 C -0.13 -4.30 7.67 22.27 0.17 -4.13 16 18 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 19 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 20 C -0.13 -3.91 10.05 22.27 0.22 -3.68 16 21 C -0.12 -4.38 9.70 22.27 0.22 -4.17 16 22 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 2.68 5.67 -2.39 -0.01 2.67 16 26 H 0.08 4.56 6.31 -2.38 -0.02 4.54 16 27 H 0.06 3.40 5.81 -2.39 -0.01 3.38 16 28 H 0.02 1.04 7.86 -2.39 -0.02 1.02 16 29 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.06 2.35 7.98 -2.39 -0.02 2.34 16 31 H 0.06 2.28 7.82 -2.39 -0.02 2.27 16 32 H 0.11 3.78 7.88 -2.92 -0.02 3.75 16 33 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -62.23 305.78 6.34 -55.89 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.05 Total: 17.73 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 4.85 Total: -38.02 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.60 Total: -82.19 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.23 6.34 -55.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031899073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.010 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds