Wall clock time and date at job start Mon Mar 30 2020 07:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20825 * 120.00128 * 2 1 4 4 O 1.34232 * 119.99881 * 180.02562 * 2 1 3 5 5 C 1.45196 * 116.99803 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.47395 * 329.99294 * 5 4 2 7 7 C 1.50697 * 109.47376 * 89.99590 * 5 4 2 8 8 H 1.08001 * 119.99850 * 32.15819 * 7 5 4 9 9 C 1.37880 * 119.99980 * 212.15648 * 7 5 4 10 10 N 1.31504 * 120.00293 * 3.30332 * 9 7 5 11 11 Si 1.86808 * 119.99705 * 183.29959 * 9 7 5 12 12 H 1.48497 * 109.46961 * 269.99890 * 11 9 7 13 13 H 1.48497 * 109.47163 * 30.00411 * 11 9 7 14 14 H 1.48497 * 109.46601 * 150.00360 * 11 9 7 15 15 C 1.50697 * 109.47020 * 209.99684 * 5 4 2 16 16 C 1.38237 * 119.99941 * 322.48740 * 15 5 4 17 17 C 1.38235 * 120.00004 * 179.78850 * 16 15 5 18 18 C 1.38236 * 120.00195 * 0.43911 * 17 16 15 19 19 C 1.38234 * 119.99515 * 359.81933 * 18 17 16 20 20 C 1.38229 * 120.00405 * 359.97240 * 19 18 17 21 21 H 1.08992 * 109.47265 * 239.99968 * 1 2 3 22 22 H 1.09002 * 109.46709 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46921 * 119.99418 * 1 2 3 24 24 H 0.97001 * 120.00179 * 354.80409 * 10 9 7 25 25 H 1.08001 * 119.99850 * 0.02562 * 16 15 5 26 26 H 1.08006 * 119.99906 * 180.27941 * 17 16 15 27 27 H 1.08000 * 120.00109 * 179.83540 * 18 17 16 28 28 H 1.08005 * 119.99852 * 180.02562 * 19 18 17 29 29 H 1.08003 * 120.00479 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1625 -0.0005 5 6 3.6281 -1.0865 0.0001 6 1 3.9446 -0.1784 -0.5131 7 6 4.1293 -1.0610 1.4211 8 1 3.5893 -1.5883 2.1936 9 6 5.2772 -0.3646 1.7349 10 7 5.8987 0.3306 0.8077 11 14 5.9494 -0.4087 3.4773 12 1 5.3573 0.7026 4.2645 13 1 5.5990 -1.7055 4.1104 14 1 7.4263 -0.2581 3.4419 15 6 4.1944 -2.2885 -0.7108 16 6 3.5933 -3.5247 -0.5646 17 6 4.1102 -4.6265 -1.2202 18 6 5.2335 -4.4939 -2.0148 19 6 5.8377 -3.2588 -2.1568 20 6 5.3184 -2.1562 -1.5046 21 1 -0.3633 -0.5138 0.8899 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5138 -0.8901 24 1 5.5939 0.2935 -0.1124 25 1 2.7176 -3.6290 0.0589 26 1 3.6379 -5.5915 -1.1095 27 1 5.6389 -5.3553 -2.5249 28 1 6.7152 -3.1550 -2.7779 29 1 5.7902 -1.1910 -1.6159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034455200.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:28 Heat of formation + Delta-G solvation = -72.929908 kcal Electronic energy + Delta-G solvation = -14690.733807 eV Core-core repulsion = 12157.529374 eV Total energy + Delta-G solvation = -2533.204433 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.47792 -38.30279 -35.55004 -33.38544 -30.83356 -30.18547 -29.61469 -26.38580 -23.40955 -21.95388 -20.83364 -19.90061 -17.31918 -16.57235 -16.40149 -15.26137 -15.05645 -14.26066 -13.92886 -13.81930 -13.21153 -12.70102 -12.65519 -12.48853 -12.03575 -12.01166 -11.66657 -10.88810 -10.81400 -10.46810 -10.28813 -10.19559 -9.93147 -9.58958 -8.90703 -8.54283 -8.23766 -7.82247 -6.57117 -4.32488 2.08234 2.10153 3.11605 3.37073 3.40073 3.55862 3.75235 4.38252 4.56684 5.18613 5.36129 5.51252 5.56184 5.61325 5.63269 5.73811 5.97478 6.13917 6.23268 6.38149 6.58548 6.72693 6.79780 7.12619 7.16756 7.41497 7.65455 7.69289 7.77724 8.22844 8.59631 8.75460 9.40168 10.79153 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.014359 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.118423 B = 1949.472924 C = 3048.549364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.452 3.548 3 O -0.514 6.514 4 O -0.365 6.365 5 C 0.228 3.772 6 H 0.061 0.939 7 C -0.603 4.603 8 H 0.062 0.938 9 C 0.033 3.967 10 N -0.887 5.887 11 Si 1.076 2.924 12 H -0.284 1.284 13 H -0.285 1.285 14 H -0.281 1.281 15 C -0.039 4.039 16 C -0.107 4.107 17 C -0.129 4.129 18 C -0.147 4.147 19 C -0.122 4.122 20 C -0.116 4.116 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.272 0.728 25 H 0.118 0.882 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 -6.202 -3.483 9.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.295 3.705 3 O -0.403 6.403 4 O -0.282 6.282 5 C 0.175 3.825 6 H 0.079 0.921 7 C -0.640 4.640 8 H 0.080 0.920 9 C -0.175 4.175 10 N -0.522 5.522 11 Si 0.902 3.098 12 H -0.210 1.210 13 H -0.211 1.211 14 H -0.206 1.206 15 C -0.040 4.040 16 C -0.125 4.125 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.140 4.140 20 C -0.135 4.135 21 H 0.110 0.890 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.136 0.864 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.342 -5.287 -2.519 7.291 hybrid contribution -1.044 -0.611 -0.900 1.508 sum -5.386 -5.898 -3.420 8.689 Atomic orbital electron populations 1.21572 0.89266 1.04688 1.04702 1.23353 0.91361 0.82706 0.73120 1.90650 1.70966 1.33314 1.45375 1.86342 1.25342 1.33966 1.82544 1.19531 0.72807 0.92843 0.97315 0.92134 1.22036 1.13019 1.36910 0.92037 0.91996 1.25968 0.93897 0.91320 1.06293 1.70773 1.41819 1.36341 1.03229 0.83459 0.76537 0.76327 0.73443 1.21046 1.21088 1.20605 1.20295 0.95134 0.96107 0.92443 1.20906 1.00142 0.92054 0.99369 1.21015 0.97015 0.98070 0.98565 1.20892 0.97411 0.97001 1.01184 1.20956 0.99700 0.92988 1.00386 1.20945 0.96600 0.98978 0.96965 0.89003 0.89093 0.89260 0.91599 0.86355 0.87062 0.87184 0.86908 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 10.43 36.01 0.38 -1.68 15 2 C 0.45 9.81 8.03 36.01 0.29 10.09 15 3 O -0.51 -13.33 16.30 -18.75 -0.31 -13.64 15 4 O -0.37 -8.58 9.10 -39.26 -0.36 -8.94 15 5 C 0.23 5.95 2.05 -29.04 -0.06 5.89 15 6 H 0.06 1.74 5.26 -51.93 -0.27 1.47 15 7 C -0.60 -17.11 8.65 -34.44 -0.30 -17.41 15 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 15 9 C 0.03 0.93 5.46 -17.82 -0.10 0.83 15 10 N -0.89 -26.46 13.62 55.43 0.75 -25.71 15 11 Si 1.08 25.31 29.91 -169.99 -5.08 20.23 15 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 15 C -0.04 -0.92 4.97 -104.62 -0.52 -1.44 15 16 C -0.11 -2.22 9.36 -39.58 -0.37 -2.59 15 17 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 15 18 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 15 19 C -0.12 -2.27 10.05 -39.59 -0.40 -2.67 15 20 C -0.12 -2.57 9.60 -39.59 -0.38 -2.94 15 21 H 0.09 1.14 8.14 -51.93 -0.42 0.71 15 22 H 0.09 1.16 8.12 -51.93 -0.42 0.74 15 23 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.27 8.06 5.43 -40.82 -0.22 7.84 15 25 H 0.12 2.39 7.70 -52.49 -0.40 1.98 15 26 H 0.11 1.62 8.06 -52.48 -0.42 1.19 15 27 H 0.11 1.52 8.06 -52.49 -0.42 1.09 15 28 H 0.11 1.77 8.06 -52.48 -0.42 1.35 15 29 H 0.12 2.68 7.03 -52.48 -0.37 2.31 15 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -32.79 260.75 -6.33 -39.12 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.01 Total: 2.49 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.25 Total: -17.48 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.75 Total: -25.71 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.66 Total: -22.57 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.79 -6.33 -39.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034455200.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.811 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds