Wall clock time and date at job start Mon Mar 30 2020 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47184 * 2 1 4 4 N 1.46901 * 109.47561 * 179.97438 * 3 2 1 5 5 C 1.45588 * 110.99846 * 294.95914 * 4 3 2 6 6 C 1.53101 * 110.69333 * 300.28592 * 5 4 3 7 7 C 1.51483 * 108.38275 * 275.87033 * 6 5 4 8 8 O 1.21285 * 120.04525 * 250.00409 * 7 6 5 9 9 N 1.33627 * 119.90703 * 70.02719 * 7 6 5 10 10 C 1.46503 * 119.95494 * 180.24563 * 9 7 6 11 11 C 1.50701 * 109.46886 * 269.97792 * 10 9 7 12 12 H 1.08003 * 120.00301 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99966 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00077 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47260 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47373 * 120.00362 * 15 13 11 18 18 H 1.48504 * 109.46867 * 240.00089 * 15 13 11 19 19 C 1.47261 * 120.09932 * 0.22281 * 9 7 6 20 20 C 1.45553 * 111.00717 * 164.36768 * 4 3 2 21 21 H 1.09008 * 109.47461 * 59.99777 * 1 2 3 22 22 H 1.09001 * 109.47303 * 299.99694 * 1 2 3 23 23 H 1.08996 * 109.47429 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46752 * 120.00020 * 2 1 3 25 25 H 1.09001 * 109.46846 * 240.00030 * 2 1 3 26 26 H 1.08998 * 109.47561 * 300.00168 * 3 2 1 27 27 H 1.09001 * 109.47205 * 60.00249 * 3 2 1 28 28 H 1.09005 * 109.23667 * 60.60489 * 5 4 3 29 29 H 1.09002 * 109.23690 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.67103 * 156.14733 * 6 5 4 31 31 H 1.09001 * 109.69067 * 35.59833 * 6 5 4 32 32 H 1.09000 * 109.47090 * 29.97280 * 10 9 7 33 33 H 1.08997 * 109.47634 * 149.98003 * 10 9 7 34 34 H 0.96993 * 120.00150 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.62531 * 169.62398 * 19 9 7 36 36 H 1.09004 * 109.62228 * 49.06564 * 19 9 7 37 37 H 1.08994 * 109.20164 * 179.80654 * 20 4 3 38 38 H 1.08996 * 109.19926 * 299.15020 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0302 0.8692 1.2332 6 6 3.5492 1.6683 2.4473 7 6 4.4782 2.8491 2.6406 8 8 5.2320 2.8796 3.5903 9 7 4.4657 3.8572 1.7637 10 6 5.3675 4.9972 1.9467 11 6 4.6845 6.0489 2.7825 12 1 3.6790 5.8847 3.1412 13 6 5.3431 7.2206 3.0894 14 7 6.5673 7.4208 2.6523 15 14 4.4968 8.5239 4.1260 16 1 3.1338 8.0596 4.4890 17 1 5.2846 8.7619 5.3620 18 1 4.3989 9.7865 3.3505 19 6 3.5471 3.8239 0.6132 20 6 4.0308 2.7510 -0.3655 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.6873 -0.1616 1.3229 29 1 5.1197 0.8830 1.2031 30 1 3.5699 1.0355 3.3346 31 1 2.5338 2.0246 2.2736 32 1 6.2750 4.6653 2.4510 33 1 5.6249 5.4168 0.9742 34 1 7.0305 8.2452 2.8678 35 1 3.5438 4.7954 0.1191 36 1 2.5410 3.5806 0.9550 37 1 5.1202 2.7190 -0.3524 38 1 3.6917 3.0040 -1.3700 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036383176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:42 Heat of formation + Delta-G solvation = -32.486529 kcal Electronic energy + Delta-G solvation = -18137.126460 eV Core-core repulsion = 15400.496480 eV Total energy + Delta-G solvation = -2736.629980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11012 -37.54956 -34.95436 -33.45475 -32.40462 -31.15379 -28.70102 -26.76679 -25.68607 -24.13520 -22.59142 -22.08429 -19.76617 -18.15098 -16.71006 -16.45366 -16.31621 -15.56402 -15.01387 -14.67232 -14.54026 -14.01621 -13.53473 -13.20182 -12.76867 -12.40168 -12.32476 -12.14020 -12.03496 -11.70573 -11.50915 -11.24779 -11.18682 -11.03522 -10.95887 -10.79804 -10.61495 -10.46838 -10.12029 -9.65036 -8.82910 -8.45191 -8.38249 -7.51248 -6.05608 -4.10474 3.28457 3.35715 3.39066 3.46612 3.90275 3.97751 4.43875 4.79240 4.85766 4.93479 5.10890 5.25133 5.28360 5.30090 5.36466 5.37674 5.54332 5.57928 5.62054 5.69636 5.77060 5.88189 5.96790 5.99572 6.08049 6.11276 6.26942 6.28048 7.02542 7.14213 7.25890 7.43971 7.52970 7.90632 8.22204 8.44186 8.89546 9.11834 9.54897 11.02449 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035418 B = 0.005927 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.370735 B = 4723.025961 C = 4856.707974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.049 3.951 4 N -0.555 5.555 5 C 0.074 3.926 6 C -0.183 4.183 7 C 0.505 3.495 8 O -0.549 6.549 9 N -0.594 5.594 10 C 0.244 3.756 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.076 3.924 20 C 0.047 3.953 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 -12.649 -8.065 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.079 4.079 4 N -0.277 5.277 5 C -0.054 4.054 6 C -0.225 4.225 7 C 0.291 3.709 8 O -0.428 6.428 9 N -0.325 5.325 10 C 0.125 3.875 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.049 4.049 20 C -0.082 4.082 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.600 -12.758 -7.922 17.824 hybrid contribution -0.729 1.456 1.219 2.034 sum -10.330 -11.302 -6.703 16.714 Atomic orbital electron populations 1.21743 0.95862 1.01545 1.01797 1.21545 0.95143 0.96650 1.02568 1.22206 0.87416 0.97109 1.01123 1.60070 1.07272 1.25980 1.34359 1.21727 1.00561 0.97720 0.85391 1.22753 1.00293 0.97664 1.01800 1.20236 0.84302 0.83708 0.82649 1.90677 1.41829 1.79814 1.30436 1.48174 1.38920 1.21196 1.24230 1.19318 0.89381 0.81712 0.97099 1.21459 1.01028 1.01184 1.32785 0.92584 1.24939 0.94864 0.98311 0.95997 1.69941 1.11443 1.26260 1.45700 0.86437 0.79599 0.81184 0.80168 1.19878 1.20827 1.20923 1.22387 0.93271 1.00982 0.88280 1.22390 1.01223 0.86253 0.98333 0.92741 0.92829 0.92745 0.91921 0.91320 0.90759 0.93948 0.89846 0.90559 0.88854 0.89557 0.93889 0.95016 0.92752 0.89040 0.91773 0.90029 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.07 5.82 -26.74 -0.16 -1.23 16 3 C 0.05 0.51 4.07 -3.83 -0.02 0.49 16 4 N -0.55 -6.82 4.54 -236.76 -1.08 -7.90 16 5 C 0.07 0.97 5.34 -4.48 -0.02 0.95 16 6 C -0.18 -2.83 5.49 -27.45 -0.15 -2.98 16 7 C 0.50 10.94 6.82 -11.11 -0.08 10.86 16 8 O -0.55 -14.63 16.65 5.55 0.09 -14.53 16 9 N -0.59 -12.80 2.46 -174.40 -0.43 -13.23 16 10 C 0.24 6.48 5.10 -5.19 -0.03 6.45 16 11 C -0.53 -15.17 9.38 -34.44 -0.32 -15.49 16 12 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.08 1.24 5.81 -3.59 -0.02 1.22 16 20 C 0.05 0.63 5.62 -4.52 -0.03 0.60 16 21 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.56 6.53 -51.93 -0.34 0.23 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.72 7.95 -51.93 -0.41 0.30 16 27 H 0.04 0.48 4.60 -51.93 -0.24 0.24 16 28 H 0.08 0.91 6.42 -51.93 -0.33 0.57 16 29 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.23 4.85 -51.93 -0.25 0.98 16 32 H 0.04 1.30 7.41 -51.93 -0.38 0.91 16 33 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.50 7.92 -51.93 -0.41 1.09 16 36 H 0.06 0.96 5.21 -51.93 -0.27 0.69 16 37 H 0.08 1.23 8.05 -51.93 -0.42 0.82 16 38 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 LS Contribution 296.36 15.07 4.47 4.47 Total: -1.00 -33.05 296.36 -7.74 -40.79 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.96 Total: -2.34 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.55 Total: 1.74 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.77 Total: -47.22 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.05 -7.74 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036383176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.304 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds