Wall clock time and date at job start Mon Mar 30 2020 07:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47184 * 2 1 4 4 N 1.46901 * 109.47561 * 179.97438 * 3 2 1 5 5 C 1.45588 * 110.99846 * 294.95914 * 4 3 2 6 6 C 1.53101 * 110.69333 * 300.28592 * 5 4 3 7 7 C 1.51483 * 108.38275 * 275.87033 * 6 5 4 8 8 O 1.21285 * 120.04525 * 250.00409 * 7 6 5 9 9 N 1.33627 * 119.90703 * 70.02719 * 7 6 5 10 10 C 1.46503 * 119.95494 * 180.24563 * 9 7 6 11 11 C 1.50701 * 109.46886 * 269.97792 * 10 9 7 12 12 H 1.08003 * 120.00301 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99966 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00077 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47260 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47373 * 120.00362 * 15 13 11 18 18 H 1.48504 * 109.46867 * 240.00089 * 15 13 11 19 19 C 1.47261 * 120.09932 * 0.22281 * 9 7 6 20 20 C 1.45553 * 111.00717 * 164.36768 * 4 3 2 21 21 H 1.09008 * 109.47461 * 59.99777 * 1 2 3 22 22 H 1.09001 * 109.47303 * 299.99694 * 1 2 3 23 23 H 1.08996 * 109.47429 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46752 * 120.00020 * 2 1 3 25 25 H 1.09001 * 109.46846 * 240.00030 * 2 1 3 26 26 H 1.08998 * 109.47561 * 300.00168 * 3 2 1 27 27 H 1.09001 * 109.47205 * 60.00249 * 3 2 1 28 28 H 1.09005 * 109.23667 * 60.60489 * 5 4 3 29 29 H 1.09002 * 109.23690 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.67103 * 156.14733 * 6 5 4 31 31 H 1.09001 * 109.69067 * 35.59833 * 6 5 4 32 32 H 1.09000 * 109.47090 * 29.97280 * 10 9 7 33 33 H 1.08997 * 109.47634 * 149.98003 * 10 9 7 34 34 H 0.96993 * 120.00150 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.62531 * 169.62398 * 19 9 7 36 36 H 1.09004 * 109.62228 * 49.06564 * 19 9 7 37 37 H 1.08994 * 109.20164 * 179.80654 * 20 4 3 38 38 H 1.08996 * 109.19926 * 299.15020 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0302 0.8692 1.2332 6 6 3.5492 1.6683 2.4473 7 6 4.4782 2.8491 2.6406 8 8 5.2320 2.8796 3.5903 9 7 4.4657 3.8572 1.7637 10 6 5.3675 4.9972 1.9467 11 6 4.6845 6.0489 2.7825 12 1 3.6790 5.8847 3.1412 13 6 5.3431 7.2206 3.0894 14 7 6.5673 7.4208 2.6523 15 14 4.4968 8.5239 4.1260 16 1 3.1338 8.0596 4.4890 17 1 5.2846 8.7619 5.3620 18 1 4.3989 9.7865 3.3505 19 6 3.5471 3.8239 0.6132 20 6 4.0308 2.7510 -0.3655 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.6873 -0.1616 1.3229 29 1 5.1197 0.8830 1.2031 30 1 3.5699 1.0355 3.3346 31 1 2.5338 2.0246 2.2736 32 1 6.2750 4.6653 2.4510 33 1 5.6249 5.4168 0.9742 34 1 7.0305 8.2452 2.8678 35 1 3.5438 4.7954 0.1191 36 1 2.5410 3.5806 0.9550 37 1 5.1202 2.7190 -0.3524 38 1 3.6917 3.0040 -1.3700 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036383176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:41 Heat of formation + Delta-G solvation = -55.726655 kcal Electronic energy + Delta-G solvation = -18138.134228 eV Core-core repulsion = 15400.496480 eV Total energy + Delta-G solvation = -2737.637747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53948 -38.96052 -36.65390 -34.91064 -33.94487 -32.46254 -30.37713 -28.20996 -26.89913 -25.56261 -24.49314 -22.93856 -20.78214 -19.81949 -18.69398 -18.08872 -17.68651 -16.77502 -16.50887 -16.28964 -15.79790 -15.37564 -14.68951 -14.58341 -14.38814 -13.90368 -13.70777 -13.45681 -13.26605 -13.11966 -12.80673 -12.72941 -12.65676 -12.40738 -12.32622 -12.24915 -11.87274 -11.74725 -11.71291 -11.30763 -10.69161 -10.58747 -9.87241 -8.95996 -8.26483 -6.42703 1.33115 1.35783 1.47503 1.76704 2.26137 2.41062 2.92163 3.02187 3.52089 3.93189 3.97968 4.06568 4.10503 4.23942 4.35170 4.42952 4.50505 4.60703 4.64454 4.80430 4.83267 4.92989 4.97054 5.01409 5.08559 5.11901 5.17636 5.33337 5.42215 5.49632 5.55090 5.76939 6.00428 6.17887 6.20227 6.64033 6.74746 7.22861 7.41841 8.80397 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035418 B = 0.005927 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.370735 B = 4723.025961 C = 4856.707974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.047 3.953 4 N -0.550 5.550 5 C 0.080 3.920 6 C -0.165 4.165 7 C 0.491 3.509 8 O -0.612 6.612 9 N -0.598 5.598 10 C 0.259 3.741 11 C -0.545 4.545 12 H 0.050 0.950 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.970 3.030 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.073 3.927 20 C 0.056 3.944 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.106 0.894 32 H -0.006 1.006 33 H 0.026 0.974 34 H 0.268 0.732 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 -13.299 -8.947 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.080 4.080 4 N -0.272 5.272 5 C -0.049 4.049 6 C -0.207 4.207 7 C 0.280 3.720 8 O -0.495 6.495 9 N -0.328 5.328 10 C 0.138 3.862 11 C -0.584 4.584 12 H 0.068 0.932 13 C -0.191 4.191 14 N -0.567 5.567 15 Si 0.794 3.206 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.051 4.051 20 C -0.073 4.073 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.012 0.988 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.140 -13.429 -8.858 20.154 hybrid contribution 0.062 1.635 1.451 2.187 sum -12.078 -11.795 -7.407 18.435 Atomic orbital electron populations 1.21725 0.94939 1.02159 1.01936 1.21509 0.95864 0.95357 1.02701 1.22333 0.85670 0.98472 1.01499 1.60147 1.08712 1.24790 1.33544 1.21758 0.99544 0.98972 0.84582 1.22724 0.99312 0.95029 1.03590 1.21426 0.84318 0.84881 0.81389 1.90635 1.44608 1.81249 1.33018 1.48226 1.38812 1.19814 1.25932 1.18783 0.88708 0.82962 0.95767 1.21692 1.00933 1.02173 1.33565 0.93213 1.25881 0.95511 1.00642 0.97058 1.70055 1.12835 1.27154 1.46630 0.85328 0.78431 0.78514 0.78278 1.19284 1.20662 1.19076 1.22714 0.93134 1.02179 0.87028 1.22301 1.00049 0.85978 0.98931 0.92272 0.93044 0.91961 0.91866 0.91118 0.89422 0.94447 0.86543 0.92560 0.87845 0.87618 0.98800 0.95634 0.92275 0.89397 0.89736 0.92183 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.63 5.82 30.59 0.18 -1.45 16 3 C 0.05 0.80 4.07 86.30 0.35 1.16 16 4 N -0.55 -12.04 4.54 -902.96 -4.10 -16.15 16 5 C 0.08 1.93 5.34 86.58 0.46 2.39 16 6 C -0.16 -4.85 5.49 30.13 0.17 -4.69 16 7 C 0.49 21.75 6.82 88.09 0.60 22.35 16 8 O -0.61 -34.22 16.65 -3.04 -0.05 -34.27 16 9 N -0.60 -26.41 2.46 -824.71 -2.03 -28.44 16 10 C 0.26 14.45 5.10 85.63 0.44 14.88 16 11 C -0.55 -32.31 9.38 25.60 0.24 -32.07 16 12 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 13 C 0.01 0.48 5.46 84.65 0.46 0.94 16 14 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 15 Si 0.97 45.57 29.54 68.60 2.03 47.59 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 C 0.07 2.30 5.81 86.26 0.50 2.80 16 20 C 0.06 1.42 5.62 86.58 0.49 1.90 16 21 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 22 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.89 6.53 -2.39 -0.02 0.87 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.32 7.95 -2.39 -0.02 1.30 16 27 H 0.04 0.70 4.60 -2.39 -0.01 0.69 16 28 H 0.12 2.12 6.42 -2.38 -0.02 2.11 16 29 H 0.06 1.61 7.87 -2.39 -0.02 1.59 16 30 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.11 2.73 4.85 -2.39 -0.01 2.71 16 32 H -0.01 -0.40 7.41 -2.39 -0.02 -0.41 16 33 H 0.03 1.43 8.03 -2.39 -0.02 1.41 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.09 2.83 7.92 -2.39 -0.02 2.81 16 36 H 0.08 2.33 5.21 -2.39 -0.01 2.32 16 37 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 38 H 0.12 2.23 8.08 -2.39 -0.02 2.21 16 Total: -1.00 -74.79 296.36 1.76 -73.03 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.03 Total: 7.68 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 4.60 Total: 7.15 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -5.85 Total: -101.18 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.05 Total: -34.27 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.79 1.76 -73.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036383176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.303 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds