Wall clock time and date at job start Mon Mar 30 2020 07:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47226 * 2 1 4 4 C 1.50703 * 109.47445 * 120.00738 * 2 1 3 5 5 H 1.07995 * 120.00162 * 119.99888 * 4 2 1 6 6 C 1.37874 * 119.99426 * 299.99794 * 4 2 1 7 7 N 1.31515 * 120.00590 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99633 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47435 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47128 * 120.00322 * 8 6 4 11 11 H 1.48504 * 109.47153 * 239.99955 * 8 6 4 12 12 N 1.46902 * 109.47170 * 240.00371 * 2 1 3 13 13 C 1.46906 * 110.99927 * 84.99785 * 12 2 1 14 14 H 1.09000 * 109.47033 * 325.00342 * 13 12 2 15 15 C 1.52997 * 109.46907 * 85.00178 * 13 12 2 16 16 C 1.53002 * 109.47248 * 205.00087 * 13 12 2 17 17 C 1.52996 * 109.46969 * 180.02562 * 16 13 12 18 18 C 1.53002 * 109.46972 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47233 * 59.99538 * 18 17 16 20 20 C 1.52996 * 109.47328 * 300.00469 * 19 18 17 21 21 C 1.53002 * 109.46891 * 299.99597 * 20 19 18 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 20 19 23 23 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 24 24 C 1.53001 * 109.46963 * 300.00399 * 16 13 12 25 25 C 1.52993 * 109.47473 * 60.00001 * 20 19 18 26 26 H 1.09001 * 109.47139 * 59.99401 * 1 2 3 27 27 H 1.08993 * 109.46799 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46722 * 299.99883 * 1 2 3 29 29 H 0.97000 * 120.00437 * 179.97438 * 7 6 4 30 30 H 1.00895 * 111.00373 * 208.95123 * 12 2 1 31 31 H 1.09001 * 109.47375 * 300.00212 * 15 13 12 32 32 H 1.09000 * 109.47140 * 60.00230 * 15 13 12 33 33 H 1.09002 * 109.47045 * 180.02562 * 15 13 12 34 34 H 1.08996 * 109.47452 * 59.99938 * 17 16 13 35 35 H 1.09000 * 109.47054 * 300.00097 * 17 16 13 36 36 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46724 * 60.00652 * 19 18 17 38 38 H 1.09001 * 109.47194 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47142 * 300.00176 * 21 20 19 41 41 H 1.09002 * 109.47097 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47140 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47533 * 179.97438 * 23 18 17 44 44 H 1.08996 * 109.47853 * 300.00202 * 23 18 17 45 45 H 1.08996 * 109.46778 * 299.99646 * 24 16 13 46 46 H 1.08992 * 109.47514 * 59.99933 * 24 16 13 47 47 H 1.09002 * 109.47722 * 180.02562 * 25 20 19 48 48 H 1.09004 * 109.46998 * 59.99561 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4826 7 7 0.9437 0.8300 2.6035 8 14 2.3227 -1.1199 4.0078 9 1 3.1476 -2.2866 3.6035 10 1 3.1474 -0.1861 4.8160 11 1 1.1680 -1.5870 4.8164 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 1 1.2576 0.9331 -2.2906 15 6 3.4110 0.9810 -2.3224 16 6 1.9770 -0.5794 -3.6455 17 6 2.0430 0.3737 -4.8405 18 6 1.9369 -0.4284 -6.1391 19 6 0.6078 -1.1859 -6.1635 20 6 0.5418 -2.1389 -4.9685 21 6 1.6989 -3.1368 -5.0476 22 6 3.0280 -2.3794 -5.0230 23 6 3.0940 -1.4262 -6.2181 24 6 3.1348 -1.5765 -3.7244 25 6 0.6478 -1.3369 -3.6700 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7091 1.1611 3.4845 30 1 2.9173 -1.1204 -1.0289 31 1 3.4862 1.5525 -1.3972 32 1 4.2359 0.2707 -2.3787 33 1 3.4574 1.6604 -3.1735 34 1 2.9897 0.9136 -4.8228 35 1 1.2184 1.0844 -4.7844 36 1 1.9834 0.2507 -6.9904 37 1 -0.2166 -0.4749 -6.1073 38 1 0.5320 -1.7569 -7.0889 39 1 -0.4054 -2.6782 -4.9857 40 1 1.6233 -3.7082 -5.9727 41 1 1.6517 -3.8161 -4.1964 42 1 3.8524 -3.0903 -5.0789 43 1 3.0183 -1.9980 -7.1429 44 1 4.0410 -0.8867 -6.2006 45 1 4.0813 -1.0363 -3.7070 46 1 3.0882 -2.2555 -2.8732 47 1 0.6012 -2.0159 -2.8186 48 1 -0.1766 -0.6259 -3.6138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:32 Heat of formation + Delta-G solvation = -39.373714 kcal Electronic energy + Delta-G solvation = -23799.387983 eV Core-core repulsion = 20851.728458 eV Total energy + Delta-G solvation = -2947.659525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33176 -36.73782 -33.77573 -32.45392 -32.39707 -31.48526 -29.10709 -26.98357 -25.72836 -25.52333 -25.04855 -22.77851 -21.30833 -21.08212 -19.84078 -18.86853 -17.32990 -16.38953 -14.98119 -14.62165 -14.30812 -14.26324 -14.19058 -13.97117 -13.73783 -13.24300 -13.08990 -12.97745 -12.66143 -12.31302 -12.18579 -12.14037 -12.03618 -11.41123 -11.14921 -10.97974 -10.80449 -10.74589 -10.63490 -10.53654 -10.47324 -10.45524 -10.34030 -10.19291 -10.07444 -9.90835 -9.34905 -9.31650 -9.20829 -8.74390 -8.43871 -7.11033 -5.99385 -4.05106 3.29795 3.37867 3.41890 4.42561 4.68686 4.70436 4.72679 5.17572 5.26289 5.32406 5.37721 5.42233 5.43444 5.47768 5.54348 5.58960 5.62203 5.71229 5.82114 5.85422 5.90377 5.97019 5.97710 6.05176 6.12673 6.14747 6.16605 6.30894 6.30940 6.39203 6.42547 6.42872 6.53563 6.58864 6.63621 6.75991 6.79501 6.91765 7.00228 7.04592 7.22262 7.32338 7.60231 7.82955 7.96874 8.33267 8.48743 8.76713 9.07764 9.60890 11.06881 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.004676 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.395447 B = 5986.674053 C = 6026.831745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.678 5.678 13 C 0.094 3.906 14 H 0.067 0.933 15 C -0.181 4.181 16 C -0.035 4.035 17 C -0.105 4.105 18 C -0.084 4.084 19 C -0.106 4.106 20 C -0.088 4.088 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.105 4.105 24 C -0.101 4.101 25 C -0.090 4.090 26 H 0.003 0.997 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -3.268 -17.306 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.308 5.308 13 C -0.017 4.017 14 H 0.085 0.915 15 C -0.240 4.240 16 C -0.036 4.036 17 C -0.143 4.143 18 C -0.102 4.102 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.104 4.104 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.128 4.128 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.606 -3.402 -17.308 17.712 hybrid contribution 1.050 0.224 1.131 1.559 sum 2.656 -3.178 -16.177 16.699 Atomic orbital electron populations 1.21701 0.98101 0.99141 0.99105 1.19070 0.92347 0.92361 0.85737 0.98262 1.21312 1.31083 1.12312 0.90549 0.92340 1.24910 0.95136 0.95000 0.98982 1.69911 1.36873 1.22974 1.23198 0.86517 0.78592 0.79626 0.83092 1.19810 1.21199 1.21058 1.60776 1.31840 1.32495 1.05689 1.21478 0.95682 0.93131 0.91398 0.91473 1.22589 0.99330 1.00719 1.01359 1.20363 0.95313 0.94551 0.93352 1.21648 1.01339 0.97373 0.93964 1.21022 0.95016 0.96561 0.97619 1.21529 0.96978 0.98127 0.97735 1.21096 0.97739 0.96083 0.95713 1.21492 0.94518 0.97216 1.00936 1.21059 0.97150 0.96708 0.95463 1.21517 0.97945 0.97157 0.97665 1.21577 0.97672 0.97779 0.96778 1.21411 0.96050 0.98835 0.96493 0.97841 0.95126 0.90393 0.93100 0.85385 0.92659 0.92826 0.93234 0.92131 0.92455 0.92088 0.92378 0.92822 0.91974 0.92986 0.91930 0.92037 0.92744 0.92458 0.92582 0.91005 0.90040 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 9.18 37.16 0.34 -2.69 16 2 C 0.21 5.28 2.41 -68.86 -0.17 5.11 16 3 H 0.00 -0.01 7.11 -51.93 -0.37 -0.38 16 4 C -0.51 -13.97 8.59 -34.44 -0.30 -14.27 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.68 -13.80 4.80 -100.95 -0.48 -14.29 16 13 C 0.09 1.63 1.68 -67.71 -0.11 1.52 16 14 H 0.07 1.29 7.11 -51.93 -0.37 0.93 16 15 C -0.18 -2.94 8.44 37.16 0.31 -2.62 16 16 C -0.04 -0.50 0.36 -154.50 -0.06 -0.56 16 17 C -0.11 -1.35 4.12 -26.73 -0.11 -1.46 16 18 C -0.08 -0.94 3.19 -90.62 -0.29 -1.23 16 19 C -0.11 -1.20 5.19 -26.73 -0.14 -1.34 16 20 C -0.09 -1.10 3.19 -90.62 -0.29 -1.39 16 21 C -0.10 -1.24 5.19 -26.73 -0.14 -1.38 16 22 C -0.09 -1.01 3.20 -90.59 -0.29 -1.30 16 23 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 24 C -0.10 -1.37 3.86 -26.71 -0.10 -1.47 16 25 C -0.09 -1.35 4.32 -26.73 -0.12 -1.46 16 26 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.71 7.22 -39.29 -0.28 6.42 16 31 H 0.05 1.02 7.43 -51.93 -0.39 0.63 16 32 H 0.05 0.82 6.42 -51.93 -0.33 0.49 16 33 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 34 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 46 H 0.07 1.09 7.21 -51.93 -0.37 0.71 16 47 H 0.08 1.40 7.60 -51.93 -0.39 1.01 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -27.07 336.91 -10.31 -37.38 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.82 Total: 4.64 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -1.69 Total: -24.23 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.14 Total: -39.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.07 -10.31 -37.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.995 kcal (2) G-P(sol) polarization free energy of solvation -27.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds