Wall clock time and date at job start Mon Mar 30 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47226 * 2 1 4 4 C 1.50703 * 109.47445 * 120.00738 * 2 1 3 5 5 H 1.07995 * 120.00162 * 119.99888 * 4 2 1 6 6 C 1.37874 * 119.99426 * 299.99794 * 4 2 1 7 7 N 1.31515 * 120.00590 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99633 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47435 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47128 * 120.00322 * 8 6 4 11 11 H 1.48504 * 109.47153 * 239.99955 * 8 6 4 12 12 N 1.46902 * 109.47170 * 240.00371 * 2 1 3 13 13 C 1.46906 * 110.99927 * 84.99785 * 12 2 1 14 14 H 1.09000 * 109.47033 * 325.00342 * 13 12 2 15 15 C 1.52997 * 109.46907 * 85.00178 * 13 12 2 16 16 C 1.53002 * 109.47248 * 205.00087 * 13 12 2 17 17 C 1.52996 * 109.46969 * 180.02562 * 16 13 12 18 18 C 1.53002 * 109.46972 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47233 * 59.99538 * 18 17 16 20 20 C 1.52996 * 109.47328 * 300.00469 * 19 18 17 21 21 C 1.53002 * 109.46891 * 299.99597 * 20 19 18 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 20 19 23 23 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 24 24 C 1.53001 * 109.46963 * 300.00399 * 16 13 12 25 25 C 1.52993 * 109.47473 * 60.00001 * 20 19 18 26 26 H 1.09001 * 109.47139 * 59.99401 * 1 2 3 27 27 H 1.08993 * 109.46799 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46722 * 299.99883 * 1 2 3 29 29 H 0.97000 * 120.00437 * 179.97438 * 7 6 4 30 30 H 1.00895 * 111.00373 * 208.95123 * 12 2 1 31 31 H 1.09001 * 109.47375 * 300.00212 * 15 13 12 32 32 H 1.09000 * 109.47140 * 60.00230 * 15 13 12 33 33 H 1.09002 * 109.47045 * 180.02562 * 15 13 12 34 34 H 1.08996 * 109.47452 * 59.99938 * 17 16 13 35 35 H 1.09000 * 109.47054 * 300.00097 * 17 16 13 36 36 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46724 * 60.00652 * 19 18 17 38 38 H 1.09001 * 109.47194 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47142 * 300.00176 * 21 20 19 41 41 H 1.09002 * 109.47097 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47140 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47533 * 179.97438 * 23 18 17 44 44 H 1.08996 * 109.47853 * 300.00202 * 23 18 17 45 45 H 1.08996 * 109.46778 * 299.99646 * 24 16 13 46 46 H 1.08992 * 109.47514 * 59.99933 * 24 16 13 47 47 H 1.09002 * 109.47722 * 180.02562 * 25 20 19 48 48 H 1.09004 * 109.46998 * 59.99561 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4826 7 7 0.9437 0.8300 2.6035 8 14 2.3227 -1.1199 4.0078 9 1 3.1476 -2.2866 3.6035 10 1 3.1474 -0.1861 4.8160 11 1 1.1680 -1.5870 4.8164 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 1 1.2576 0.9331 -2.2906 15 6 3.4110 0.9810 -2.3224 16 6 1.9770 -0.5794 -3.6455 17 6 2.0430 0.3737 -4.8405 18 6 1.9369 -0.4284 -6.1391 19 6 0.6078 -1.1859 -6.1635 20 6 0.5418 -2.1389 -4.9685 21 6 1.6989 -3.1368 -5.0476 22 6 3.0280 -2.3794 -5.0230 23 6 3.0940 -1.4262 -6.2181 24 6 3.1348 -1.5765 -3.7244 25 6 0.6478 -1.3369 -3.6700 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7091 1.1611 3.4845 30 1 2.9173 -1.1204 -1.0289 31 1 3.4862 1.5525 -1.3972 32 1 4.2359 0.2707 -2.3787 33 1 3.4574 1.6604 -3.1735 34 1 2.9897 0.9136 -4.8228 35 1 1.2184 1.0844 -4.7844 36 1 1.9834 0.2507 -6.9904 37 1 -0.2166 -0.4749 -6.1073 38 1 0.5320 -1.7569 -7.0889 39 1 -0.4054 -2.6782 -4.9857 40 1 1.6233 -3.7082 -5.9727 41 1 1.6517 -3.8161 -4.1964 42 1 3.8524 -3.0903 -5.0789 43 1 3.0183 -1.9980 -7.1429 44 1 4.0410 -0.8867 -6.2006 45 1 4.0813 -1.0363 -3.7070 46 1 3.0882 -2.2555 -2.8732 47 1 0.6012 -2.0159 -2.8186 48 1 -0.1766 -0.6259 -3.6138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:31 Heat of formation + Delta-G solvation = -52.344307 kcal Electronic energy + Delta-G solvation = -23799.950430 eV Core-core repulsion = 20851.728458 eV Total energy + Delta-G solvation = -2948.221972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.39293 -38.31178 -35.55632 -33.51195 -33.38900 -33.16181 -30.64485 -28.64751 -27.32088 -26.70633 -26.47299 -24.17021 -22.36970 -22.08683 -21.59244 -20.26432 -18.56619 -18.14947 -16.90856 -15.94805 -15.76035 -15.34284 -15.28247 -15.24794 -15.09353 -14.56717 -14.51147 -14.09905 -13.88376 -13.72915 -13.57689 -13.38766 -13.17051 -13.15607 -12.85387 -12.63000 -12.44428 -12.26844 -12.22669 -12.14291 -11.78957 -11.62892 -11.54496 -11.51523 -11.46532 -11.34592 -10.88621 -10.59652 -10.39113 -10.34330 -10.31305 -8.85463 -8.12198 -6.25626 1.39771 1.41761 1.53342 2.41446 3.16449 3.59639 3.68124 3.73765 3.85396 4.12975 4.35086 4.37375 4.42674 4.44666 4.46460 4.53923 4.55770 4.60903 4.63727 4.67987 4.79001 4.85747 4.89668 4.95117 5.00108 5.01570 5.05889 5.12860 5.22623 5.25089 5.26352 5.28150 5.30062 5.31596 5.32133 5.40286 5.45300 5.52484 5.52873 5.66891 5.69578 5.75660 5.81849 5.86767 5.93262 6.24934 6.55756 6.86673 7.08675 7.45099 8.93625 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.004676 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.395447 B = 5986.674053 C = 6026.831745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.220 3.780 3 H -0.034 1.034 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.671 5.671 13 C 0.093 3.907 14 H 0.043 0.957 15 C -0.172 4.172 16 C -0.027 4.027 17 C -0.104 4.104 18 C -0.081 4.081 19 C -0.104 4.104 20 C -0.086 4.086 21 C -0.103 4.103 22 C -0.083 4.083 23 C -0.102 4.102 24 C -0.098 4.098 25 C -0.088 4.088 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.053 0.947 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -4.250 -19.458 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 H -0.016 1.016 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.301 5.301 13 C -0.017 4.017 14 H 0.061 0.939 15 C -0.231 4.231 16 C -0.028 4.028 17 C -0.142 4.142 18 C -0.100 4.100 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.140 4.140 22 C -0.102 4.102 23 C -0.139 4.139 24 C -0.136 4.136 25 C -0.126 4.126 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.731 -4.389 -19.480 20.154 hybrid contribution 0.666 0.559 1.802 2.001 sum 3.397 -3.830 -17.677 18.404 Atomic orbital electron populations 1.21503 0.98240 0.98456 0.98444 1.18824 0.92173 0.90703 0.87153 1.01620 1.21619 1.31231 1.12409 0.91690 0.92467 1.25718 0.95268 0.95678 1.02002 1.70040 1.37752 1.24199 1.23927 0.85475 0.78077 0.78618 0.79238 1.19065 1.20714 1.20725 1.60702 1.31837 1.32713 1.04823 1.21561 0.95533 0.92862 0.91782 0.93905 1.22482 0.98821 1.00904 1.00872 1.20269 0.95511 0.94756 0.92271 1.21635 1.01424 0.97067 0.94062 1.21041 0.95210 0.96793 0.96937 1.21524 0.97039 0.97918 0.97667 1.21073 0.98328 0.96277 0.94756 1.21487 0.94193 0.96936 1.01413 1.21061 0.97454 0.96928 0.94741 1.21513 0.97925 0.96847 0.97655 1.21536 0.97211 0.97380 0.97466 1.21340 0.95860 0.98258 0.97161 0.96594 0.95602 0.92851 0.92994 0.85357 0.95535 0.91653 0.90829 0.91484 0.93131 0.90247 0.92664 0.90848 0.91816 0.90950 0.93245 0.90905 0.90910 0.91781 0.92136 0.93098 0.93030 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 9.18 71.98 0.66 -4.93 16 2 C 0.22 11.40 2.41 44.17 0.11 11.51 16 3 H -0.03 -1.95 7.11 -2.39 -0.02 -1.96 16 4 C -0.53 -29.58 8.59 25.60 0.22 -29.36 16 5 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.67 -28.33 4.80 -473.29 -2.27 -30.60 16 13 C 0.09 3.31 1.68 44.91 0.08 3.38 16 14 H 0.04 1.72 7.11 -2.39 -0.02 1.71 16 15 C -0.17 -5.59 8.44 71.98 0.61 -4.98 16 16 C -0.03 -0.78 0.36 -52.18 -0.02 -0.80 16 17 C -0.10 -2.47 4.12 30.59 0.13 -2.34 16 18 C -0.08 -1.56 3.19 -10.79 -0.03 -1.59 16 19 C -0.10 -2.05 5.19 30.59 0.16 -1.89 16 20 C -0.09 -2.01 3.19 -10.80 -0.03 -2.05 16 21 C -0.10 -2.21 5.19 30.59 0.16 -2.05 16 22 C -0.08 -1.75 3.20 -10.78 -0.03 -1.78 16 23 C -0.10 -1.80 5.19 30.60 0.16 -1.65 16 24 C -0.10 -2.56 3.86 30.61 0.12 -2.44 16 25 C -0.09 -2.66 4.32 30.59 0.13 -2.53 16 26 H 0.02 0.73 7.43 -2.39 -0.02 0.71 16 27 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 3.02 6.07 -2.39 -0.01 3.01 16 29 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 30 H 0.33 13.81 7.22 -89.70 -0.65 13.17 16 31 H 0.03 0.99 7.43 -2.39 -0.02 0.97 16 32 H 0.06 1.95 6.42 -2.39 -0.02 1.94 16 33 H 0.07 2.02 6.43 -2.39 -0.02 2.00 16 34 H 0.07 1.51 6.43 -2.39 -0.02 1.49 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.51 6.43 -2.39 -0.02 1.50 16 46 H 0.05 1.53 7.21 -2.39 -0.02 1.51 16 47 H 0.05 1.84 7.60 -2.39 -0.02 1.82 16 48 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -59.43 336.91 3.11 -56.32 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.27 Total: 24.21 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 2.85 Total: -42.36 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.03 Total: -84.37 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -59.43 3.11 -56.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.971 kcal (2) G-P(sol) polarization free energy of solvation -59.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds