Wall clock time and date at job start Mon Mar 30 2020 07:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47155 * 2 1 4 4 C 1.50701 * 109.46779 * 239.99891 * 2 1 3 5 5 H 1.08002 * 120.00255 * 245.31971 * 4 2 1 6 6 C 1.37881 * 119.99885 * 65.32139 * 4 2 1 7 7 N 1.31516 * 120.00069 * 9.17196 * 6 4 2 8 8 Si 1.86797 * 119.99996 * 189.16676 * 6 4 2 9 9 H 1.48498 * 109.47167 * 270.00338 * 8 6 4 10 10 H 1.48501 * 109.46923 * 30.00147 * 8 6 4 11 11 H 1.48503 * 109.47170 * 150.00228 * 8 6 4 12 12 N 1.46900 * 109.47049 * 120.00145 * 2 1 3 13 13 C 1.46891 * 111.00145 * 274.58994 * 12 2 1 14 14 H 1.09007 * 109.47064 * 341.21385 * 13 12 2 15 15 C 1.53004 * 109.47512 * 101.21371 * 13 12 2 16 16 C 1.53002 * 109.47220 * 221.21481 * 13 12 2 17 17 C 1.53001 * 109.46744 * 59.99856 * 16 13 12 18 18 C 1.53008 * 109.46975 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.46809 * 60.00249 * 18 17 16 20 20 C 1.53011 * 109.46905 * 299.99922 * 19 18 17 21 21 C 1.53002 * 109.47106 * 299.99937 * 20 19 18 22 22 C 1.53003 * 109.46824 * 60.00217 * 21 20 19 23 23 C 1.52998 * 109.46973 * 299.99681 * 22 21 20 24 24 C 1.52990 * 109.47008 * 59.99998 * 22 21 20 25 25 C 1.52993 * 109.46947 * 299.99900 * 16 13 12 26 26 H 1.08995 * 109.47262 * 179.36073 * 1 2 3 27 27 H 1.09007 * 109.46802 * 299.35866 * 1 2 3 28 28 H 1.09001 * 109.47120 * 59.35564 * 1 2 3 29 29 H 0.97001 * 119.99817 * 356.25856 * 7 6 4 30 30 H 1.00910 * 111.00070 * 38.54446 * 12 2 1 31 31 H 1.08992 * 109.47410 * 183.68835 * 15 13 12 32 32 H 1.08998 * 109.47095 * 303.69659 * 15 13 12 33 33 H 1.09004 * 109.46736 * 63.68778 * 15 13 12 34 34 H 1.08991 * 109.47249 * 299.99921 * 17 16 13 35 35 H 1.08999 * 109.47603 * 60.00321 * 17 16 13 36 36 H 1.08999 * 109.47203 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47051 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47548 * 59.99471 * 19 18 17 39 39 H 1.09002 * 109.46728 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.46992 * 300.00406 * 21 20 19 41 41 H 1.08999 * 109.47161 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46899 * 180.02562 * 22 21 20 43 43 H 1.09007 * 109.46929 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47676 * 300.00322 * 23 22 21 45 45 H 1.09007 * 109.46764 * 179.97438 * 24 22 21 46 46 H 1.08999 * 109.47243 * 59.99941 * 24 22 21 47 47 H 1.08996 * 109.47685 * 299.99668 * 25 16 13 48 48 H 1.09004 * 109.47333 * 60.00298 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5805 -1.6360 -1.1338 6 6 1.7920 -0.1789 -2.4798 7 7 1.2871 1.0301 -2.5940 8 14 2.1837 -1.1758 -4.0102 9 1 3.5799 -0.9021 -4.4353 10 1 2.0321 -2.6224 -3.7107 11 1 1.2505 -0.7956 -5.1010 12 7 2.0197 -0.6925 1.1994 13 6 2.0917 0.2248 2.3444 14 1 2.0915 1.2542 1.9859 15 6 0.8818 0.0013 3.2540 16 6 3.3769 -0.0410 3.1309 17 6 4.5868 0.1825 2.2213 18 6 5.8721 -0.0827 3.0079 19 6 5.8728 -1.5274 3.5116 20 6 4.6628 -1.7509 4.4212 21 6 4.7376 -0.7950 5.6135 22 6 4.7369 0.6497 5.1097 23 6 5.9468 0.8732 4.2003 24 6 3.4517 0.9149 4.3232 25 6 3.3772 -1.4858 3.6341 26 1 -0.3633 -1.0275 -0.0115 27 1 -0.3633 0.5039 0.8958 28 1 -0.3633 0.5238 -0.8842 29 1 1.0332 1.5266 -1.8003 30 1 1.4456 -1.4942 1.4139 31 1 0.9006 0.7257 4.0681 32 1 -0.0344 0.1266 2.6771 33 1 0.9175 -1.0078 3.6646 34 1 4.5333 -0.4981 1.3718 35 1 4.5866 1.2119 1.8628 36 1 6.7340 0.0761 2.3599 37 1 6.7882 -1.7162 4.0724 38 1 5.8195 -2.2084 2.6623 39 1 4.6636 -2.7801 4.7804 40 1 5.6532 -0.9840 6.1738 41 1 3.8759 -0.9546 6.2617 42 1 4.7906 1.3307 5.9591 43 1 5.9465 1.9026 3.8417 44 1 6.8624 0.6842 4.7605 45 1 3.4510 1.9443 3.9647 46 1 2.5898 0.7556 4.9711 47 1 2.5154 -1.6452 4.2821 48 1 3.3239 -2.1666 2.7845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:34 Heat of formation + Delta-G solvation = -39.907545 kcal Electronic energy + Delta-G solvation = -23899.033366 eV Core-core repulsion = 20951.350692 eV Total energy + Delta-G solvation = -2947.682674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32218 -36.98032 -34.05293 -32.44316 -32.37262 -31.52382 -28.99096 -27.24231 -25.71277 -25.47118 -24.62613 -22.68809 -21.33295 -21.06880 -20.42192 -19.11393 -17.31971 -16.75258 -14.89368 -14.51921 -14.29308 -14.27261 -14.16707 -13.96713 -13.65591 -13.14557 -13.08059 -13.03247 -12.93338 -12.48249 -12.27423 -12.15503 -11.88630 -11.67463 -11.28486 -11.07854 -10.92538 -10.75168 -10.61329 -10.53491 -10.52238 -10.45938 -10.35795 -10.24462 -10.06089 -10.03040 -9.44830 -9.32807 -9.26649 -8.55278 -8.13863 -7.21005 -6.26439 -3.94541 3.47839 3.51438 3.67031 4.57212 4.69157 4.70583 4.73814 5.09928 5.23719 5.35893 5.42324 5.43579 5.44531 5.47416 5.52837 5.59147 5.60294 5.65717 5.76916 5.78591 5.82881 5.92513 5.97745 6.03069 6.09473 6.14101 6.17025 6.28259 6.28421 6.30945 6.36724 6.39538 6.42171 6.49200 6.54843 6.63061 6.66481 6.75414 6.81266 6.85895 6.94929 7.08839 7.14758 7.40586 8.03458 8.35108 8.55454 8.72640 8.99079 9.74787 11.10476 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.005323 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.673722 B = 5258.497664 C = 5746.417462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.203 3.797 3 H 0.024 0.976 4 C -0.574 4.574 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 1.070 2.930 9 H -0.290 1.290 10 H -0.289 1.289 11 H -0.287 1.287 12 N -0.666 5.666 13 C 0.092 3.908 14 H 0.061 0.939 15 C -0.181 4.181 16 C -0.033 4.033 17 C -0.092 4.092 18 C -0.088 4.088 19 C -0.104 4.104 20 C -0.086 4.086 21 C -0.105 4.105 22 C -0.083 4.083 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.097 4.097 26 H 0.038 0.962 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.268 0.732 30 H 0.326 0.674 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 -2.415 16.221 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.094 3.906 3 H 0.042 0.958 4 C -0.613 4.613 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.899 3.101 9 H -0.217 1.217 10 H -0.216 1.216 11 H -0.213 1.213 12 N -0.294 5.294 13 C -0.019 4.019 14 H 0.080 0.920 15 C -0.239 4.239 16 C -0.034 4.034 17 C -0.130 4.130 18 C -0.106 4.106 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.143 4.143 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.135 4.135 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.576 -2.283 14.370 15.967 hybrid contribution -1.068 0.157 1.927 2.209 sum 5.508 -2.127 16.297 17.334 Atomic orbital electron populations 1.22653 1.01724 0.99758 0.99264 1.19359 0.88590 0.94259 0.88363 0.95836 1.21927 1.37751 1.10614 0.91021 0.92688 1.25725 0.95236 0.96582 1.01233 1.70782 1.41587 1.09789 1.33418 0.83536 0.76393 0.74873 0.75317 1.21659 1.21567 1.21281 1.60682 1.57191 1.08659 1.02851 1.21572 0.92290 0.96889 0.91154 0.92048 1.22662 0.99410 1.01503 1.00357 1.20351 0.95203 0.94292 0.93524 1.21416 0.91763 1.01701 0.98082 1.21091 0.98718 0.94603 0.96189 1.21492 0.96985 0.96729 0.98931 1.21068 0.95985 0.98032 0.95323 1.21517 1.00793 0.94888 0.97059 1.21013 0.95517 0.96337 0.97299 1.21529 0.97119 0.99191 0.96523 1.21647 0.96606 0.99144 0.96946 1.21540 0.95655 0.96995 0.99286 0.94330 0.96386 0.92361 0.92067 0.85740 0.92999 0.92751 0.92492 0.89657 0.93160 0.91892 0.93002 0.91860 0.92082 0.92721 0.92542 0.92119 0.92394 0.92803 0.92539 0.92306 0.92886 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.70 37.16 0.32 -3.68 16 2 C 0.20 4.92 2.16 -68.86 -0.15 4.77 16 3 H 0.02 0.64 6.72 -51.93 -0.35 0.29 16 4 C -0.57 -15.86 8.76 -34.44 -0.30 -16.16 16 5 H 0.05 1.55 7.83 -52.49 -0.41 1.14 16 6 C 0.02 0.44 5.21 -17.82 -0.09 0.34 16 7 N -0.92 -27.45 13.10 55.43 0.73 -26.72 16 8 Si 1.07 25.43 29.91 -169.99 -5.08 20.35 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.67 -13.36 4.55 -100.95 -0.46 -13.82 16 13 C 0.09 1.56 1.86 -67.71 -0.13 1.44 16 14 H 0.06 1.18 7.19 -51.92 -0.37 0.81 16 15 C -0.18 -2.68 8.32 37.16 0.31 -2.37 16 16 C -0.03 -0.48 0.36 -154.51 -0.06 -0.54 16 17 C -0.09 -1.49 4.32 -26.73 -0.12 -1.61 16 18 C -0.09 -1.18 3.20 -90.62 -0.29 -1.47 16 19 C -0.10 -1.31 5.19 -26.72 -0.14 -1.45 16 20 C -0.09 -1.05 3.20 -90.59 -0.29 -1.34 16 21 C -0.11 -1.17 5.19 -26.73 -0.14 -1.31 16 22 C -0.08 -0.97 3.19 -90.62 -0.29 -1.26 16 23 C -0.11 -1.27 5.19 -26.73 -0.14 -1.41 16 24 C -0.11 -1.38 4.12 -26.73 -0.11 -1.49 16 25 C -0.10 -1.35 3.97 -26.71 -0.11 -1.45 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.02 0.36 6.07 -51.93 -0.32 0.04 16 28 H 0.06 1.47 6.37 -51.93 -0.33 1.14 16 29 H 0.27 7.97 5.94 -40.82 -0.24 7.72 16 30 H 0.33 6.36 7.99 -39.29 -0.31 6.05 16 31 H 0.05 0.69 6.63 -51.93 -0.34 0.35 16 32 H 0.05 0.86 6.02 -51.93 -0.31 0.55 16 33 H 0.06 0.79 6.24 -51.93 -0.32 0.46 16 34 H 0.08 1.64 7.60 -51.93 -0.39 1.25 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 46 H 0.06 0.73 6.51 -51.93 -0.34 0.40 16 47 H 0.05 0.70 6.35 -51.93 -0.33 0.37 16 48 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -28.08 334.59 -10.13 -38.21 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.64 Total: 5.92 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -1.71 Total: -28.98 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.27 Total: -40.54 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.08 -10.13 -38.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.697 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds