Wall clock time and date at job start Mon Mar 30 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47155 * 2 1 4 4 C 1.50701 * 109.46779 * 239.99891 * 2 1 3 5 5 H 1.08002 * 120.00255 * 245.31971 * 4 2 1 6 6 C 1.37881 * 119.99885 * 65.32139 * 4 2 1 7 7 N 1.31516 * 120.00069 * 9.17196 * 6 4 2 8 8 Si 1.86797 * 119.99996 * 189.16676 * 6 4 2 9 9 H 1.48498 * 109.47167 * 270.00338 * 8 6 4 10 10 H 1.48501 * 109.46923 * 30.00147 * 8 6 4 11 11 H 1.48503 * 109.47170 * 150.00228 * 8 6 4 12 12 N 1.46900 * 109.47049 * 120.00145 * 2 1 3 13 13 C 1.46891 * 111.00145 * 274.58994 * 12 2 1 14 14 H 1.09007 * 109.47064 * 341.21385 * 13 12 2 15 15 C 1.53004 * 109.47512 * 101.21371 * 13 12 2 16 16 C 1.53002 * 109.47220 * 221.21481 * 13 12 2 17 17 C 1.53001 * 109.46744 * 59.99856 * 16 13 12 18 18 C 1.53008 * 109.46975 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.46809 * 60.00249 * 18 17 16 20 20 C 1.53011 * 109.46905 * 299.99922 * 19 18 17 21 21 C 1.53002 * 109.47106 * 299.99937 * 20 19 18 22 22 C 1.53003 * 109.46824 * 60.00217 * 21 20 19 23 23 C 1.52998 * 109.46973 * 299.99681 * 22 21 20 24 24 C 1.52990 * 109.47008 * 59.99998 * 22 21 20 25 25 C 1.52993 * 109.46947 * 299.99900 * 16 13 12 26 26 H 1.08995 * 109.47262 * 179.36073 * 1 2 3 27 27 H 1.09007 * 109.46802 * 299.35866 * 1 2 3 28 28 H 1.09001 * 109.47120 * 59.35564 * 1 2 3 29 29 H 0.97001 * 119.99817 * 356.25856 * 7 6 4 30 30 H 1.00910 * 111.00070 * 38.54446 * 12 2 1 31 31 H 1.08992 * 109.47410 * 183.68835 * 15 13 12 32 32 H 1.08998 * 109.47095 * 303.69659 * 15 13 12 33 33 H 1.09004 * 109.46736 * 63.68778 * 15 13 12 34 34 H 1.08991 * 109.47249 * 299.99921 * 17 16 13 35 35 H 1.08999 * 109.47603 * 60.00321 * 17 16 13 36 36 H 1.08999 * 109.47203 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47051 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47548 * 59.99471 * 19 18 17 39 39 H 1.09002 * 109.46728 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.46992 * 300.00406 * 21 20 19 41 41 H 1.08999 * 109.47161 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46899 * 180.02562 * 22 21 20 43 43 H 1.09007 * 109.46929 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47676 * 300.00322 * 23 22 21 45 45 H 1.09007 * 109.46764 * 179.97438 * 24 22 21 46 46 H 1.08999 * 109.47243 * 59.99941 * 24 22 21 47 47 H 1.08996 * 109.47685 * 299.99668 * 25 16 13 48 48 H 1.09004 * 109.47333 * 60.00298 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5805 -1.6360 -1.1338 6 6 1.7920 -0.1789 -2.4798 7 7 1.2871 1.0301 -2.5940 8 14 2.1837 -1.1758 -4.0102 9 1 3.5799 -0.9021 -4.4353 10 1 2.0321 -2.6224 -3.7107 11 1 1.2505 -0.7956 -5.1010 12 7 2.0197 -0.6925 1.1994 13 6 2.0917 0.2248 2.3444 14 1 2.0915 1.2542 1.9859 15 6 0.8818 0.0013 3.2540 16 6 3.3769 -0.0410 3.1309 17 6 4.5868 0.1825 2.2213 18 6 5.8721 -0.0827 3.0079 19 6 5.8728 -1.5274 3.5116 20 6 4.6628 -1.7509 4.4212 21 6 4.7376 -0.7950 5.6135 22 6 4.7369 0.6497 5.1097 23 6 5.9468 0.8732 4.2003 24 6 3.4517 0.9149 4.3232 25 6 3.3772 -1.4858 3.6341 26 1 -0.3633 -1.0275 -0.0115 27 1 -0.3633 0.5039 0.8958 28 1 -0.3633 0.5238 -0.8842 29 1 1.0332 1.5266 -1.8003 30 1 1.4456 -1.4942 1.4139 31 1 0.9006 0.7257 4.0681 32 1 -0.0344 0.1266 2.6771 33 1 0.9175 -1.0078 3.6646 34 1 4.5333 -0.4981 1.3718 35 1 4.5866 1.2119 1.8628 36 1 6.7340 0.0761 2.3599 37 1 6.7882 -1.7162 4.0724 38 1 5.8195 -2.2084 2.6623 39 1 4.6636 -2.7801 4.7804 40 1 5.6532 -0.9840 6.1738 41 1 3.8759 -0.9546 6.2617 42 1 4.7906 1.3307 5.9591 43 1 5.9465 1.9026 3.8417 44 1 6.8624 0.6842 4.7605 45 1 3.4510 1.9443 3.9647 46 1 2.5898 0.7556 4.9711 47 1 2.5154 -1.6452 4.2821 48 1 3.3239 -2.1666 2.7845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:33 Heat of formation + Delta-G solvation = -54.069656 kcal Electronic energy + Delta-G solvation = -23899.647481 eV Core-core repulsion = 20951.350692 eV Total energy + Delta-G solvation = -2948.296789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42884 -38.57822 -35.81776 -33.54462 -33.42256 -33.20494 -30.46576 -28.88073 -26.87931 -26.76212 -26.48023 -24.00531 -22.70448 -22.14254 -22.05100 -20.41715 -18.88532 -18.29663 -16.36369 -16.15797 -15.62908 -15.44209 -15.32810 -15.27491 -15.18976 -14.67163 -14.38949 -14.28087 -14.12916 -13.70536 -13.68109 -13.52269 -13.20362 -13.16181 -13.02055 -12.67398 -12.52255 -12.36226 -12.08283 -12.04653 -11.92329 -11.68533 -11.58495 -11.56790 -11.50716 -11.38905 -10.84032 -10.48365 -10.40565 -10.38636 -10.21066 -8.89931 -8.53942 -6.23641 1.52786 1.61317 1.79128 2.58520 3.22963 3.48600 3.63717 3.69588 3.78600 4.06100 4.29505 4.31163 4.38323 4.39437 4.41249 4.48407 4.49346 4.51447 4.55672 4.60579 4.62654 4.64967 4.73851 4.79819 4.86125 4.89669 4.96882 4.98852 5.08883 5.13425 5.19763 5.21147 5.22740 5.25623 5.27146 5.28250 5.34655 5.43658 5.46587 5.49891 5.64965 5.67857 5.77441 5.84595 6.03191 6.21369 6.57953 6.83108 6.87039 7.54070 8.82111 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.005323 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.673722 B = 5258.497664 C = 5746.417462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.209 3.791 3 H -0.012 1.012 4 C -0.584 4.584 5 H 0.044 0.956 6 C -0.033 4.033 7 N -0.941 5.941 8 Si 1.114 2.886 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.666 5.666 13 C 0.091 3.909 14 H 0.030 0.970 15 C -0.172 4.172 16 C -0.027 4.027 17 C -0.089 4.089 18 C -0.087 4.087 19 C -0.102 4.102 20 C -0.084 4.084 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.104 4.104 24 C -0.103 4.103 25 C -0.094 4.094 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.030 0.970 29 H 0.256 0.744 30 H 0.331 0.669 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.024 0.976 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 -3.632 19.000 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 H 0.006 0.994 4 C -0.623 4.623 5 H 0.063 0.937 6 C -0.231 4.231 7 N -0.580 5.580 8 Si 0.937 3.063 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.295 5.295 13 C -0.020 4.020 14 H 0.049 0.951 15 C -0.230 4.230 16 C -0.028 4.028 17 C -0.127 4.127 18 C -0.105 4.105 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.131 4.131 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.144 -3.504 17.181 18.934 hybrid contribution -1.217 0.569 1.059 1.711 sum 5.927 -2.934 18.240 19.402 Atomic orbital electron populations 1.22449 1.00380 0.99934 0.99103 1.19086 0.89396 0.92195 0.89317 0.99444 1.22253 1.37273 1.10201 0.92576 0.93719 1.27086 0.94691 0.96723 1.04572 1.70896 1.43427 1.10833 1.32847 0.82959 0.76647 0.74470 0.72188 1.20601 1.19692 1.21036 1.60565 1.56939 1.09110 1.02862 1.21633 0.95150 0.94441 0.90751 0.95127 1.22545 0.97176 1.03099 1.00145 1.20283 0.92775 0.96044 0.93695 1.21323 0.94770 0.98896 0.97732 1.21071 0.96549 0.96238 0.96682 1.21482 0.98485 0.95230 0.98777 1.21082 0.94246 0.99454 0.95466 1.21509 1.02378 0.93453 0.96444 1.21044 0.93883 0.97622 0.97417 1.21519 0.98548 0.98162 0.95884 1.21633 0.98481 0.97783 0.96215 1.21488 0.97577 0.95144 0.98891 0.93736 0.93968 0.95080 0.93337 0.85193 0.90877 0.93888 0.90874 0.93702 0.95757 0.92501 0.90836 0.93614 0.90599 0.90872 0.91260 0.90013 0.93089 0.90697 0.93636 0.90840 0.91510 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.48 8.70 71.98 0.63 -6.86 16 2 C 0.21 10.64 2.16 44.17 0.10 10.74 16 3 H -0.01 -0.71 6.72 -2.39 -0.02 -0.73 16 4 C -0.58 -33.42 8.76 25.60 0.22 -33.19 16 5 H 0.04 2.60 7.83 -2.91 -0.02 2.57 16 6 C -0.03 -1.93 5.21 84.66 0.44 -1.49 16 7 N -0.94 -58.24 13.10 21.45 0.28 -57.96 16 8 Si 1.11 51.83 29.91 68.60 2.05 53.89 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 N -0.67 -27.70 4.55 -473.31 -2.15 -29.85 16 13 C 0.09 3.14 1.86 44.92 0.08 3.23 16 14 H 0.03 1.24 7.19 -2.38 -0.02 1.22 16 15 C -0.17 -4.81 8.32 71.98 0.60 -4.21 16 16 C -0.03 -0.80 0.36 -52.18 -0.02 -0.82 16 17 C -0.09 -3.05 4.32 30.60 0.13 -2.92 16 18 C -0.09 -2.32 3.20 -10.79 -0.03 -2.35 16 19 C -0.10 -2.41 5.19 30.60 0.16 -2.25 16 20 C -0.08 -1.81 3.20 -10.77 -0.03 -1.84 16 21 C -0.10 -1.78 5.19 30.60 0.16 -1.62 16 22 C -0.08 -1.62 3.19 -10.80 -0.03 -1.65 16 23 C -0.10 -2.26 5.19 30.59 0.16 -2.10 16 24 C -0.10 -2.49 4.12 30.59 0.13 -2.37 16 25 C -0.09 -2.45 3.97 30.61 0.12 -2.32 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.74 6.07 -2.38 -0.01 1.72 16 28 H 0.03 1.60 6.37 -2.39 -0.02 1.59 16 29 H 0.26 16.03 5.94 -92.71 -0.55 15.48 16 30 H 0.33 13.05 7.99 -89.69 -0.72 12.33 16 31 H 0.07 1.76 6.63 -2.39 -0.02 1.74 16 32 H 0.04 1.30 6.02 -2.39 -0.01 1.29 16 33 H 0.07 1.83 6.24 -2.39 -0.01 1.82 16 34 H 0.04 1.86 7.60 -2.39 -0.02 1.84 16 35 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.07 1.58 6.51 -2.39 -0.02 1.56 16 47 H 0.07 1.56 6.35 -2.39 -0.02 1.55 16 48 H 0.05 1.54 7.60 -2.39 -0.02 1.52 16 Total: -1.00 -63.45 334.59 3.41 -60.04 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.42 Total: 25.91 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 2.80 Total: -52.03 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -1.87 Total: -87.81 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.89 kcal Total: -63.45 3.41 -60.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.969 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds