Wall clock time and date at job start Mon Mar 30 2020 07:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46982 * 2 1 4 4 N 1.46892 * 109.47418 * 120.00399 * 2 1 3 5 5 C 1.46898 * 111.00106 * 261.59299 * 4 2 1 6 6 H 1.08998 * 109.46983 * 336.90923 * 5 4 2 7 7 C 1.53000 * 109.47390 * 96.90722 * 5 4 2 8 8 C 1.50701 * 109.47394 * 216.90881 * 5 4 2 9 9 H 1.08004 * 119.99823 * 0.02562 * 8 5 4 10 10 C 1.37873 * 120.00080 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99756 * 180.02562 * 10 8 5 12 12 Si 1.86803 * 120.00021 * 359.97438 * 10 8 5 13 13 H 1.48499 * 109.46778 * 90.00453 * 12 10 8 14 14 H 1.48505 * 109.46963 * 210.00154 * 12 10 8 15 15 H 1.48493 * 109.47291 * 330.00407 * 12 10 8 16 16 C 1.53008 * 109.46728 * 240.00531 * 2 1 3 17 17 C 1.53000 * 109.46728 * 180.02562 * 16 2 1 18 18 C 1.53006 * 109.47090 * 179.97438 * 17 16 2 19 19 C 1.53000 * 109.46884 * 299.99908 * 18 17 16 20 20 C 1.53007 * 109.47305 * 59.99676 * 19 18 17 21 21 C 1.53006 * 109.46684 * 59.99965 * 20 19 18 22 22 C 1.53000 * 109.47278 * 300.00051 * 21 20 19 23 23 C 1.52997 * 109.46870 * 59.99681 * 18 17 16 24 24 C 1.52997 * 109.47112 * 59.99755 * 16 2 1 25 25 C 1.52996 * 109.47278 * 300.00350 * 20 19 18 26 26 H 1.09004 * 109.47405 * 65.62339 * 1 2 3 27 27 H 1.08994 * 109.47227 * 185.62200 * 1 2 3 28 28 H 1.08998 * 109.47082 * 305.62263 * 1 2 3 29 29 H 1.00898 * 111.00013 * 25.54492 * 4 2 1 30 30 H 1.09005 * 109.47024 * 65.44329 * 7 5 4 31 31 H 1.08997 * 109.47128 * 185.44447 * 7 5 4 32 32 H 1.08998 * 109.47048 * 305.44876 * 7 5 4 33 33 H 0.97009 * 119.99798 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.46982 * 299.99469 * 17 16 2 35 35 H 1.09000 * 109.47147 * 59.99906 * 17 16 2 36 36 H 1.08996 * 109.47266 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47287 * 299.99980 * 19 18 17 38 38 H 1.08998 * 109.47511 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47558 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.46836 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47047 * 60.00578 * 21 20 19 42 42 H 1.09000 * 109.47287 * 180.02562 * 22 21 20 43 43 H 1.09008 * 109.46663 * 180.02562 * 23 18 17 44 44 H 1.09000 * 109.47431 * 60.00317 * 23 18 17 45 45 H 1.08996 * 109.47672 * 300.00064 * 24 16 2 46 46 H 1.09004 * 109.46992 * 60.00251 * 24 16 2 47 47 H 1.09000 * 109.46925 * 299.99457 * 25 20 19 48 48 H 1.09003 * 109.47585 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.3843 0.2676 2.2497 6 1 2.6028 1.2350 1.7976 7 6 1.2207 0.4149 3.2321 8 6 3.6022 -0.2301 2.9845 9 1 4.0599 -1.1659 2.6994 10 6 4.1321 0.5091 4.0207 11 7 5.1953 0.0749 4.6616 12 14 3.3408 2.1280 4.5132 13 1 2.3068 1.8783 5.5495 14 1 4.3780 3.0402 5.0585 15 1 2.7086 2.7521 3.3234 16 6 2.0399 -0.7212 -1.2494 17 6 3.5699 -0.7217 -1.2491 18 6 4.0799 -1.4435 -2.4981 19 6 3.5694 -2.8858 -2.4979 20 6 2.0393 -2.8853 -2.4981 21 6 1.5298 -2.1641 -3.7476 22 6 2.0404 -0.7217 -3.7479 23 6 3.5704 -0.7223 -3.7475 24 6 1.5298 0.0001 -2.4985 25 6 1.5294 -2.1635 -1.2491 26 1 -0.3634 0.4242 -0.9361 27 1 -0.3633 -1.0227 0.1007 28 1 -0.3633 0.5985 0.8353 29 1 1.3390 -1.3564 1.5368 30 1 1.0649 -0.5287 3.7550 31 1 1.4525 1.1970 3.9551 32 1 0.3157 0.6814 2.6862 33 1 5.5683 0.5953 5.3904 34 1 3.9336 0.3058 -1.2489 35 1 3.9329 -1.2359 -0.3591 36 1 5.1699 -1.4443 -2.4977 37 1 3.9324 -3.3996 -1.6077 38 1 3.9323 -3.3999 -3.3878 39 1 1.6756 -3.9127 -2.4983 40 1 0.4398 -2.1641 -3.7480 41 1 1.8931 -2.6783 -4.6374 42 1 1.6770 -0.2078 -4.6378 43 1 3.9334 -1.2368 -4.6374 44 1 3.9341 0.3052 -3.7478 45 1 0.4399 0.0002 -2.4985 46 1 1.8932 1.0278 -2.4985 47 1 1.8923 -2.6773 -0.3590 48 1 0.4394 -2.1627 -1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:36 Heat of formation + Delta-G solvation = -27.218309 kcal Electronic energy + Delta-G solvation = -23917.497426 eV Core-core repulsion = 20970.364999 eV Total energy + Delta-G solvation = -2947.132427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31513 -37.01078 -33.86921 -32.42567 -32.34829 -31.73004 -29.49765 -27.59111 -25.70181 -25.44782 -24.93156 -22.77580 -21.32813 -21.05180 -20.13107 -19.18165 -17.29704 -16.50945 -15.16480 -14.64771 -14.31866 -14.28136 -14.17249 -14.11798 -13.94018 -13.19581 -13.07031 -12.94562 -12.86854 -12.51190 -12.43571 -12.16414 -12.14613 -12.06341 -11.29361 -11.23585 -11.03894 -11.00883 -10.59852 -10.52556 -10.49027 -10.44753 -10.35931 -10.26131 -10.08050 -9.60752 -9.39598 -9.30345 -9.24999 -8.92151 -8.50380 -7.28106 -5.99164 -3.94904 3.28252 3.37657 3.40526 4.44715 4.69323 4.70948 4.74899 5.03202 5.22775 5.31510 5.36340 5.42693 5.45137 5.47450 5.53163 5.59078 5.61146 5.65724 5.73816 5.76199 5.80824 5.92385 5.99233 6.03025 6.05339 6.15604 6.18155 6.19336 6.27260 6.29689 6.32429 6.35222 6.42218 6.43597 6.46487 6.52220 6.58161 6.68589 6.76198 6.79664 6.84661 6.94879 7.13910 7.19487 7.80876 8.03353 8.42975 8.78242 9.14333 9.64781 11.14647 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.005446 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.244958 B = 5139.998727 C = 5518.060619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.066 0.934 4 N -0.661 5.661 5 C 0.184 3.816 6 H 0.028 0.972 7 C -0.181 4.181 8 C -0.490 4.490 9 H 0.082 0.918 10 C 0.065 3.935 11 N -0.903 5.903 12 Si 0.884 3.116 13 H -0.282 1.282 14 H -0.298 1.298 15 H -0.271 1.271 16 C -0.034 4.034 17 C -0.093 4.093 18 C -0.088 4.088 19 C -0.104 4.104 20 C -0.086 4.086 21 C -0.105 4.105 22 C -0.083 4.083 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.098 4.098 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.328 0.672 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 -2.590 -16.611 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.084 0.916 4 N -0.290 5.290 5 C 0.075 3.925 6 H 0.045 0.955 7 C -0.240 4.240 8 C -0.528 4.528 9 H 0.100 0.900 10 C -0.135 4.135 11 N -0.543 5.543 12 Si 0.715 3.285 13 H -0.209 1.209 14 H -0.226 1.226 15 H -0.197 1.197 16 C -0.035 4.035 17 C -0.130 4.130 18 C -0.106 4.106 19 C -0.142 4.142 20 C -0.104 4.104 21 C -0.142 4.142 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.648 -2.609 -16.689 18.543 hybrid contribution -1.336 1.324 0.778 2.035 sum -8.983 -1.285 -15.911 18.317 Atomic orbital electron populations 1.22659 0.98341 1.01616 1.01352 1.21656 0.91459 0.97153 0.91738 0.91616 1.60563 1.44976 1.17674 1.05772 1.19745 0.93092 0.91562 0.88110 0.95464 1.22903 0.98941 1.01164 1.00974 1.21045 1.09265 1.08466 1.14048 0.90024 1.24942 0.94984 0.97290 0.96319 1.69890 1.22574 1.38773 1.23041 0.86934 0.78052 0.84701 0.78820 1.20950 1.22589 1.19672 1.20361 0.95765 0.94583 0.92759 1.21429 0.94064 1.00032 0.97499 1.21092 0.99119 0.94975 0.95437 1.21495 0.95095 0.96468 1.01125 1.21053 0.95705 0.98358 0.95278 1.21516 0.99659 0.95515 0.97557 1.21022 0.95670 0.95839 0.97624 1.21532 0.95099 1.00123 0.97615 1.21678 0.99806 0.98633 0.94273 1.21531 0.99085 0.95449 0.97460 0.92652 0.92489 0.93118 0.85393 0.92593 0.94072 0.95349 0.92858 0.93018 0.89386 0.91815 0.91757 0.93030 0.92075 0.92582 0.92743 0.92161 0.92833 0.92392 0.92255 0.92493 0.90708 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.44 37.16 0.31 -2.17 16 2 C 0.09 1.46 1.98 -67.71 -0.13 1.33 16 3 H 0.07 1.17 7.08 -51.93 -0.37 0.81 16 4 N -0.66 -12.61 4.60 -100.96 -0.46 -13.07 16 5 C 0.18 4.21 2.27 -68.86 -0.16 4.05 16 6 H 0.03 0.66 6.15 -51.93 -0.32 0.34 16 7 C -0.18 -3.85 8.54 37.16 0.32 -3.53 16 8 C -0.49 -13.60 9.42 -34.44 -0.32 -13.92 16 9 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 10 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 11 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 12 Si 0.88 22.10 24.32 -169.99 -4.13 17.97 16 13 H -0.28 -6.92 6.92 56.52 0.39 -6.53 16 14 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 15 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 16 C -0.03 -0.48 0.36 -154.51 -0.06 -0.53 16 17 C -0.09 -1.46 4.32 -26.73 -0.12 -1.58 16 18 C -0.09 -1.17 3.20 -90.62 -0.29 -1.46 16 19 C -0.10 -1.30 5.19 -26.73 -0.14 -1.44 16 20 C -0.09 -1.02 3.20 -90.62 -0.29 -1.31 16 21 C -0.10 -1.14 5.19 -26.73 -0.14 -1.27 16 22 C -0.08 -0.94 3.20 -90.59 -0.29 -1.23 16 23 C -0.11 -1.25 5.19 -26.73 -0.14 -1.38 16 24 C -0.11 -1.32 4.14 -26.70 -0.11 -1.43 16 25 C -0.10 -1.30 3.96 -26.73 -0.11 -1.41 16 26 H 0.05 0.68 6.14 -51.93 -0.32 0.36 16 27 H 0.06 0.74 6.61 -51.93 -0.34 0.39 16 28 H 0.05 0.73 6.54 -51.93 -0.34 0.39 16 29 H 0.33 5.96 7.74 -39.29 -0.30 5.65 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.93 3.43 -51.93 -0.18 0.75 16 32 H 0.03 0.52 6.52 -51.93 -0.34 0.18 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.66 7.60 -51.93 -0.39 1.27 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.70 6.31 -51.93 -0.33 0.37 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.13 7.58 -51.93 -0.39 0.73 16 48 H 0.05 0.66 6.56 -51.93 -0.34 0.32 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -28.62 329.81 -9.25 -37.87 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.64 Total: 4.80 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -1.75 Total: -25.52 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.31 Total: -40.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.13 Total: 17.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.62 -9.25 -37.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.654 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds