Wall clock time and date at job start Mon Mar 30 2020 07:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46982 * 2 1 4 4 N 1.46892 * 109.47418 * 120.00399 * 2 1 3 5 5 C 1.46898 * 111.00106 * 261.59299 * 4 2 1 6 6 H 1.08998 * 109.46983 * 336.90923 * 5 4 2 7 7 C 1.53000 * 109.47390 * 96.90722 * 5 4 2 8 8 C 1.50701 * 109.47394 * 216.90881 * 5 4 2 9 9 H 1.08004 * 119.99823 * 0.02562 * 8 5 4 10 10 C 1.37873 * 120.00080 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99756 * 180.02562 * 10 8 5 12 12 Si 1.86803 * 120.00021 * 359.97438 * 10 8 5 13 13 H 1.48499 * 109.46778 * 90.00453 * 12 10 8 14 14 H 1.48505 * 109.46963 * 210.00154 * 12 10 8 15 15 H 1.48493 * 109.47291 * 330.00407 * 12 10 8 16 16 C 1.53008 * 109.46728 * 240.00531 * 2 1 3 17 17 C 1.53000 * 109.46728 * 180.02562 * 16 2 1 18 18 C 1.53006 * 109.47090 * 179.97438 * 17 16 2 19 19 C 1.53000 * 109.46884 * 299.99908 * 18 17 16 20 20 C 1.53007 * 109.47305 * 59.99676 * 19 18 17 21 21 C 1.53006 * 109.46684 * 59.99965 * 20 19 18 22 22 C 1.53000 * 109.47278 * 300.00051 * 21 20 19 23 23 C 1.52997 * 109.46870 * 59.99681 * 18 17 16 24 24 C 1.52997 * 109.47112 * 59.99755 * 16 2 1 25 25 C 1.52996 * 109.47278 * 300.00350 * 20 19 18 26 26 H 1.09004 * 109.47405 * 65.62339 * 1 2 3 27 27 H 1.08994 * 109.47227 * 185.62200 * 1 2 3 28 28 H 1.08998 * 109.47082 * 305.62263 * 1 2 3 29 29 H 1.00898 * 111.00013 * 25.54492 * 4 2 1 30 30 H 1.09005 * 109.47024 * 65.44329 * 7 5 4 31 31 H 1.08997 * 109.47128 * 185.44447 * 7 5 4 32 32 H 1.08998 * 109.47048 * 305.44876 * 7 5 4 33 33 H 0.97009 * 119.99798 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.46982 * 299.99469 * 17 16 2 35 35 H 1.09000 * 109.47147 * 59.99906 * 17 16 2 36 36 H 1.08996 * 109.47266 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47287 * 299.99980 * 19 18 17 38 38 H 1.08998 * 109.47511 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47558 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.46836 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47047 * 60.00578 * 21 20 19 42 42 H 1.09000 * 109.47287 * 180.02562 * 22 21 20 43 43 H 1.09008 * 109.46663 * 180.02562 * 23 18 17 44 44 H 1.09000 * 109.47431 * 60.00317 * 23 18 17 45 45 H 1.08996 * 109.47672 * 300.00064 * 24 16 2 46 46 H 1.09004 * 109.46992 * 60.00251 * 24 16 2 47 47 H 1.09000 * 109.46925 * 299.99457 * 25 20 19 48 48 H 1.09003 * 109.47585 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.3843 0.2676 2.2497 6 1 2.6028 1.2350 1.7976 7 6 1.2207 0.4149 3.2321 8 6 3.6022 -0.2301 2.9845 9 1 4.0599 -1.1659 2.6994 10 6 4.1321 0.5091 4.0207 11 7 5.1953 0.0749 4.6616 12 14 3.3408 2.1280 4.5132 13 1 2.3068 1.8783 5.5495 14 1 4.3780 3.0402 5.0585 15 1 2.7086 2.7521 3.3234 16 6 2.0399 -0.7212 -1.2494 17 6 3.5699 -0.7217 -1.2491 18 6 4.0799 -1.4435 -2.4981 19 6 3.5694 -2.8858 -2.4979 20 6 2.0393 -2.8853 -2.4981 21 6 1.5298 -2.1641 -3.7476 22 6 2.0404 -0.7217 -3.7479 23 6 3.5704 -0.7223 -3.7475 24 6 1.5298 0.0001 -2.4985 25 6 1.5294 -2.1635 -1.2491 26 1 -0.3634 0.4242 -0.9361 27 1 -0.3633 -1.0227 0.1007 28 1 -0.3633 0.5985 0.8353 29 1 1.3390 -1.3564 1.5368 30 1 1.0649 -0.5287 3.7550 31 1 1.4525 1.1970 3.9551 32 1 0.3157 0.6814 2.6862 33 1 5.5683 0.5953 5.3904 34 1 3.9336 0.3058 -1.2489 35 1 3.9329 -1.2359 -0.3591 36 1 5.1699 -1.4443 -2.4977 37 1 3.9324 -3.3996 -1.6077 38 1 3.9323 -3.3999 -3.3878 39 1 1.6756 -3.9127 -2.4983 40 1 0.4398 -2.1641 -3.7480 41 1 1.8931 -2.6783 -4.6374 42 1 1.6770 -0.2078 -4.6378 43 1 3.9334 -1.2368 -4.6374 44 1 3.9341 0.3052 -3.7478 45 1 0.4399 0.0002 -2.4985 46 1 1.8932 1.0278 -2.4985 47 1 1.8923 -2.6773 -0.3590 48 1 0.4394 -2.1627 -1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:36 Heat of formation + Delta-G solvation = -43.584347 kcal Electronic energy + Delta-G solvation = -23918.207110 eV Core-core repulsion = 20970.364999 eV Total energy + Delta-G solvation = -2947.842112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.38167 -38.49490 -35.53038 -33.73479 -33.38546 -33.34425 -30.91362 -28.99745 -27.04080 -26.71528 -26.49459 -24.00165 -22.51625 -22.09314 -21.82302 -20.42446 -18.67641 -18.23818 -16.96255 -16.10588 -15.74576 -15.46389 -15.27562 -15.23530 -15.13653 -14.69850 -14.41091 -14.32242 -14.08542 -14.03973 -13.67695 -13.58714 -13.24243 -13.15856 -12.90843 -12.87431 -12.48355 -12.36708 -12.05477 -12.00252 -11.63982 -11.57167 -11.53963 -11.50016 -11.37752 -11.37326 -11.17353 -10.73111 -10.41778 -10.34839 -10.28025 -8.83179 -8.24832 -6.25056 1.27380 1.32878 1.42488 2.32243 3.09303 3.49322 3.68472 3.73874 3.81406 4.11823 4.34657 4.35294 4.42701 4.43653 4.45840 4.49359 4.53027 4.56714 4.58258 4.60974 4.64693 4.69266 4.72391 4.78803 4.90177 4.96105 5.00438 5.02588 5.04145 5.15730 5.23450 5.24665 5.28243 5.29944 5.32324 5.32520 5.37897 5.44872 5.47373 5.55480 5.69047 5.71040 5.73535 5.82096 5.90294 6.14920 6.79552 6.82343 6.91600 7.39729 8.93007 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.005446 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.244958 B = 5139.998727 C = 5518.060619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.089 3.911 3 H 0.044 0.956 4 N -0.670 5.670 5 C 0.191 3.809 6 H 0.017 0.983 7 C -0.174 4.174 8 C -0.491 4.491 9 H 0.033 0.967 10 C 0.006 3.994 11 N -0.954 5.954 12 Si 0.950 3.050 13 H -0.268 1.268 14 H -0.301 1.301 15 H -0.254 1.254 16 C -0.029 4.029 17 C -0.090 4.090 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.085 4.085 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.103 4.103 24 C -0.103 4.103 25 C -0.094 4.094 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.335 0.665 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.263 0.737 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 -1.934 -19.106 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 H 0.063 0.937 4 N -0.300 5.300 5 C 0.082 3.918 6 H 0.034 0.966 7 C -0.233 4.233 8 C -0.530 4.530 9 H 0.052 0.948 10 C -0.190 4.190 11 N -0.596 5.596 12 Si 0.778 3.222 13 H -0.194 1.194 14 H -0.229 1.229 15 H -0.178 1.178 16 C -0.030 4.030 17 C -0.128 4.128 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.103 4.103 21 C -0.137 4.137 22 C -0.100 4.100 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.132 4.132 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.851 -1.962 -19.209 22.149 hybrid contribution -0.233 1.025 1.531 1.857 sum -11.084 -0.937 -17.678 20.887 Atomic orbital electron populations 1.22551 0.95617 1.02473 1.02431 1.21717 0.93617 0.95848 0.90941 0.93725 1.60384 1.46305 1.17520 1.05784 1.19461 0.92043 0.91333 0.88995 0.96551 1.22756 0.99328 1.00848 1.00361 1.21343 1.10894 1.06610 1.14168 0.94834 1.25791 0.95508 1.01274 0.96451 1.70060 1.24638 1.40742 1.24145 0.85848 0.77279 0.79851 0.79239 1.19373 1.22894 1.17822 1.20311 0.94084 0.95538 0.93074 1.21330 0.95969 0.98407 0.97102 1.21073 0.98646 0.95727 0.95232 1.21484 0.96110 0.95548 1.00959 1.21067 0.94745 0.99128 0.95353 1.21503 1.00503 0.94726 0.97015 1.21055 0.94815 0.96456 0.97645 1.21513 0.95947 0.99741 0.96843 1.21661 1.00738 0.98106 0.93557 1.21478 0.99893 0.94452 0.97346 0.90395 0.91379 0.93511 0.84708 0.92751 0.95001 0.91818 0.92841 0.95090 0.93894 0.92855 0.93971 0.91155 0.90894 0.91132 0.91202 0.89958 0.91054 0.92817 0.90522 0.93117 0.93410 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.44 71.98 0.61 -3.61 16 2 C 0.09 2.80 1.98 44.92 0.09 2.89 16 3 H 0.04 1.59 7.08 -2.39 -0.02 1.58 16 4 N -0.67 -26.13 4.60 -473.32 -2.18 -28.31 16 5 C 0.19 8.88 2.27 44.17 0.10 8.98 16 6 H 0.02 0.81 6.15 -2.39 -0.01 0.79 16 7 C -0.17 -7.14 8.54 71.98 0.61 -6.53 16 8 C -0.49 -28.64 9.42 25.60 0.24 -28.40 16 9 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 10 C 0.01 0.34 5.45 84.65 0.46 0.80 16 11 N -0.95 -61.33 13.96 21.45 0.30 -61.04 16 12 Si 0.95 46.13 24.32 68.60 1.67 47.80 16 13 H -0.27 -12.31 6.92 99.48 0.69 -11.63 16 14 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 15 H -0.25 -11.50 6.53 99.48 0.65 -10.85 16 16 C -0.03 -0.81 0.36 -52.18 -0.02 -0.83 16 17 C -0.09 -3.01 4.32 30.60 0.13 -2.87 16 18 C -0.09 -2.37 3.20 -10.79 -0.03 -2.40 16 19 C -0.10 -2.52 5.19 30.60 0.16 -2.36 16 20 C -0.08 -1.82 3.20 -10.79 -0.03 -1.85 16 21 C -0.10 -1.73 5.19 30.60 0.16 -1.57 16 22 C -0.08 -1.53 3.20 -10.77 -0.03 -1.57 16 23 C -0.10 -2.20 5.19 30.59 0.16 -2.04 16 24 C -0.10 -2.27 4.14 30.61 0.13 -2.14 16 25 C -0.09 -2.38 3.96 30.59 0.12 -2.26 16 26 H 0.08 1.58 6.14 -2.39 -0.01 1.57 16 27 H 0.07 1.53 6.61 -2.39 -0.02 1.51 16 28 H 0.05 1.19 6.54 -2.39 -0.02 1.17 16 29 H 0.33 12.17 7.74 -89.70 -0.69 11.47 16 30 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.03 1.36 3.43 -2.39 -0.01 1.35 16 32 H 0.06 2.15 6.52 -2.39 -0.02 2.14 16 33 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 34 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.78 7.60 -2.39 -0.02 1.76 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.46 6.31 -2.39 -0.02 1.44 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.46 7.58 -2.39 -0.02 1.44 16 48 H 0.07 1.52 6.56 -2.39 -0.02 1.51 16 Total: -1.00 -65.76 329.81 2.79 -62.97 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.16 Total: 24.34 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 2.85 Total: -45.75 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -1.88 Total: -89.35 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.67 Total: 47.80 kcal Total: -65.76 2.79 -62.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.386 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds