Wall clock time and date at job start Mon Mar 30 2020 07:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47264 * 2 1 4 4 C 1.50699 * 109.47035 * 239.99646 * 2 1 3 5 5 H 1.08001 * 120.00455 * 240.00085 * 4 2 1 6 6 C 1.37888 * 119.99743 * 60.00168 * 4 2 1 7 7 N 1.31506 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99788 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47221 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46850 * 120.00388 * 8 6 4 11 11 H 1.48500 * 109.46843 * 239.99919 * 8 6 4 12 12 N 1.46903 * 109.46873 * 120.00213 * 2 1 3 13 13 C 1.46896 * 111.00094 * 274.99345 * 12 2 1 14 14 H 1.09001 * 109.46881 * 35.00148 * 13 12 2 15 15 C 1.53001 * 109.47661 * 275.00541 * 13 12 2 16 16 C 1.52995 * 109.47518 * 154.99952 * 13 12 2 17 17 C 1.53002 * 109.46925 * 60.00204 * 16 13 12 18 18 C 1.52997 * 109.47415 * 180.02562 * 17 16 13 19 19 C 1.53006 * 109.47164 * 300.00027 * 18 17 16 20 20 C 1.52999 * 109.46626 * 59.99702 * 19 18 17 21 21 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 22 22 C 1.52996 * 109.47131 * 299.99311 * 21 20 19 23 23 C 1.52997 * 109.47232 * 60.00127 * 18 17 16 24 24 C 1.52997 * 109.47165 * 300.00167 * 22 21 20 25 25 C 1.52996 * 109.47577 * 180.02562 * 16 13 12 26 26 H 1.08996 * 109.47002 * 59.99605 * 1 2 3 27 27 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46746 * 299.99825 * 1 2 3 29 29 H 0.97006 * 119.99921 * 180.02562 * 7 6 4 30 30 H 1.00899 * 111.00145 * 38.95329 * 12 2 1 31 31 H 1.08992 * 109.47514 * 179.97438 * 15 13 12 32 32 H 1.09001 * 109.47109 * 300.00022 * 15 13 12 33 33 H 1.09004 * 109.47086 * 59.99549 * 15 13 12 34 34 H 1.09000 * 109.46986 * 60.00086 * 17 16 13 35 35 H 1.09001 * 109.47601 * 300.00809 * 17 16 13 36 36 H 1.09001 * 109.46922 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47050 * 300.00004 * 19 18 17 39 39 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47289 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47611 * 59.99933 * 21 20 19 42 42 H 1.09000 * 109.47054 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47153 * 60.00008 * 23 18 17 44 44 H 1.08996 * 109.46952 * 180.02562 * 23 18 17 45 45 H 1.09002 * 109.47045 * 179.97438 * 24 22 21 46 46 H 1.08998 * 109.47171 * 299.99294 * 24 22 21 47 47 H 1.09001 * 109.46997 * 60.00088 * 25 16 13 48 48 H 1.09000 * 109.47054 * 300.00355 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 1 1.2578 0.9329 2.2907 15 6 3.4112 0.9808 2.3224 16 6 1.9771 -0.5797 3.6454 17 6 3.1348 -1.5769 3.7243 18 6 3.0290 -2.3796 5.0225 19 6 3.0942 -1.4269 6.2180 20 6 1.9364 -0.4297 6.1390 21 6 0.6078 -1.1880 6.1630 22 6 0.5427 -2.1407 4.9676 23 6 1.7004 -3.1379 5.0465 24 6 0.6484 -1.3380 3.6694 25 6 2.0420 0.3734 4.8405 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7089 1.1614 -3.4844 30 1 1.4495 -1.4980 1.4100 31 1 3.4577 1.6600 3.1735 32 1 4.2361 0.2704 2.3785 33 1 3.4863 1.5524 1.3973 34 1 4.0814 -1.0367 3.7068 35 1 3.0883 -2.2559 2.8728 36 1 3.8541 -3.0896 5.0788 37 1 3.0193 -1.9988 7.1428 38 1 4.0408 -0.8867 6.2009 39 1 1.9831 0.2493 6.9904 40 1 -0.2170 -0.4777 6.1072 41 1 0.5324 -1.7598 7.0879 42 1 -0.4041 -2.6806 4.9844 43 1 1.6540 -3.8166 4.1948 44 1 1.6249 -3.7093 5.9715 45 1 0.6025 -2.0168 2.8177 46 1 -0.1764 -0.6277 3.6131 47 1 1.2169 1.0835 4.7841 48 1 2.9883 0.9139 4.8232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:39 Heat of formation + Delta-G solvation = -36.004986 kcal Electronic energy + Delta-G solvation = -23814.996162 eV Core-core repulsion = 20867.482716 eV Total energy + Delta-G solvation = -2947.513446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46600 -36.75804 -33.79778 -32.58067 -32.47849 -31.45937 -29.09326 -27.16454 -25.76490 -25.49563 -25.05183 -22.68861 -21.37084 -21.19708 -19.99346 -18.95346 -17.44665 -16.23239 -14.90829 -14.81933 -14.52135 -14.32637 -14.24963 -14.14228 -13.60199 -13.36471 -13.18987 -12.83021 -12.53417 -12.51443 -12.24453 -12.09584 -11.65485 -11.48737 -11.33604 -10.99448 -10.88730 -10.79742 -10.74599 -10.65041 -10.61121 -10.49572 -10.46024 -10.22732 -10.00237 -9.87509 -9.42631 -9.38601 -9.23259 -8.85875 -8.30447 -7.08869 -5.92962 -3.95384 3.34373 3.42094 3.47530 4.48358 4.61230 4.62217 4.63378 5.12249 5.18370 5.32056 5.33552 5.35119 5.38784 5.40424 5.46919 5.49022 5.51848 5.55275 5.77113 5.82462 5.86992 5.91706 6.00433 6.05319 6.07923 6.14147 6.15358 6.23461 6.27540 6.30135 6.31180 6.43942 6.45919 6.54799 6.62433 6.67771 6.76116 6.76676 6.86058 6.92011 7.01260 7.20471 7.49457 7.80939 7.97288 8.37677 8.66849 8.74112 9.12842 9.69892 11.14121 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.004678 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.448178 B = 5984.454165 C = 6025.767265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.490 4.490 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.286 1.286 12 N -0.678 5.678 13 C 0.095 3.905 14 H 0.031 0.969 15 C -0.137 4.137 16 C -0.050 4.050 17 C -0.095 4.095 18 C -0.088 4.088 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.106 4.106 22 C -0.084 4.084 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.102 4.102 26 H 0.087 0.913 27 H 0.025 0.975 28 H 0.003 0.997 29 H 0.257 0.743 30 H 0.324 0.676 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -3.695 18.190 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.529 4.529 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.310 5.310 13 C -0.016 4.016 14 H 0.049 0.951 15 C -0.195 4.195 16 C -0.050 4.050 17 C -0.132 4.132 18 C -0.107 4.107 19 C -0.143 4.143 20 C -0.103 4.103 21 C -0.144 4.144 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.140 4.140 26 H 0.105 0.895 27 H 0.044 0.956 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.688 -3.504 17.870 18.288 hybrid contribution -0.815 -0.222 -0.747 1.128 sum 0.874 -3.726 17.123 17.545 Atomic orbital electron populations 1.22421 1.01026 0.98934 1.00279 1.19175 0.89282 0.94441 0.86742 0.94941 1.21216 1.29769 1.12218 0.89669 0.92027 1.24950 0.95460 0.95231 0.98984 1.69898 1.37611 1.23304 1.23052 0.86496 0.78474 0.79675 0.83066 1.19790 1.21319 1.21234 1.60896 1.58004 1.08878 1.03201 1.21389 0.96483 0.93948 0.89771 0.95099 1.21859 0.97843 0.99360 1.00462 1.20555 0.94961 0.95098 0.94387 1.21513 0.97734 0.97533 0.96438 1.21103 0.97056 0.96829 0.95675 1.21519 0.97999 0.97136 0.97644 1.21044 0.94955 0.96618 0.97684 1.21523 0.97127 0.98072 0.97644 1.21023 0.98009 0.96033 0.95150 1.21518 0.94530 0.97161 1.01135 1.21614 0.97050 0.98770 0.96912 1.21618 1.01676 0.97164 0.93555 0.89476 0.95586 0.97762 0.93265 0.85662 0.93861 0.92323 0.92689 0.91908 0.90760 0.91791 0.92700 0.92264 0.91901 0.92342 0.92572 0.91786 0.91941 0.92717 0.91474 0.92450 0.92461 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.92 37.16 0.33 -3.73 16 2 C 0.21 5.30 2.38 -68.86 -0.16 5.14 16 3 H 0.03 0.91 7.11 -51.93 -0.37 0.54 16 4 C -0.49 -13.60 8.84 -34.44 -0.30 -13.91 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.98 11.32 55.43 0.63 -25.35 16 8 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.68 -14.08 5.32 -100.96 -0.54 -14.61 16 13 C 0.09 1.67 1.73 -67.72 -0.12 1.55 16 14 H 0.03 0.60 7.11 -51.93 -0.37 0.23 16 15 C -0.14 -2.34 8.69 37.16 0.32 -2.02 16 16 C -0.05 -0.70 0.31 -154.51 -0.05 -0.75 16 17 C -0.09 -1.30 3.96 -26.73 -0.11 -1.41 16 18 C -0.09 -1.02 3.19 -90.62 -0.29 -1.31 16 19 C -0.11 -1.11 5.19 -26.73 -0.14 -1.25 16 20 C -0.08 -0.92 3.19 -90.60 -0.29 -1.21 16 21 C -0.11 -1.14 5.19 -26.73 -0.14 -1.28 16 22 C -0.08 -0.98 3.19 -90.62 -0.29 -1.27 16 23 C -0.11 -1.19 5.19 -26.73 -0.14 -1.33 16 24 C -0.11 -1.47 4.24 -26.73 -0.11 -1.58 16 25 C -0.10 -1.28 4.13 -26.71 -0.11 -1.39 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.02 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.32 6.50 5.74 -39.29 -0.23 6.28 16 31 H 0.04 0.63 6.43 -51.93 -0.33 0.29 16 32 H 0.06 0.98 6.43 -51.93 -0.33 0.65 16 33 H 0.05 1.06 7.43 -51.93 -0.39 0.68 16 34 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 35 H 0.07 1.15 7.48 -51.93 -0.39 0.77 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.02 6.21 -51.93 -0.32 0.70 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -27.75 335.29 -10.28 -38.03 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.71 Total: 4.51 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -1.69 Total: -24.33 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.09 Total: -39.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.75 -10.28 -38.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.027 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds