Wall clock time and date at job start Mon Mar 30 2020 07:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47264 * 2 1 4 4 C 1.50699 * 109.47035 * 239.99646 * 2 1 3 5 5 H 1.08001 * 120.00455 * 240.00085 * 4 2 1 6 6 C 1.37888 * 119.99743 * 60.00168 * 4 2 1 7 7 N 1.31506 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99788 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47221 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46850 * 120.00388 * 8 6 4 11 11 H 1.48500 * 109.46843 * 239.99919 * 8 6 4 12 12 N 1.46903 * 109.46873 * 120.00213 * 2 1 3 13 13 C 1.46896 * 111.00094 * 274.99345 * 12 2 1 14 14 H 1.09001 * 109.46881 * 35.00148 * 13 12 2 15 15 C 1.53001 * 109.47661 * 275.00541 * 13 12 2 16 16 C 1.52995 * 109.47518 * 154.99952 * 13 12 2 17 17 C 1.53002 * 109.46925 * 60.00204 * 16 13 12 18 18 C 1.52997 * 109.47415 * 180.02562 * 17 16 13 19 19 C 1.53006 * 109.47164 * 300.00027 * 18 17 16 20 20 C 1.52999 * 109.46626 * 59.99702 * 19 18 17 21 21 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 22 22 C 1.52996 * 109.47131 * 299.99311 * 21 20 19 23 23 C 1.52997 * 109.47232 * 60.00127 * 18 17 16 24 24 C 1.52997 * 109.47165 * 300.00167 * 22 21 20 25 25 C 1.52996 * 109.47577 * 180.02562 * 16 13 12 26 26 H 1.08996 * 109.47002 * 59.99605 * 1 2 3 27 27 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46746 * 299.99825 * 1 2 3 29 29 H 0.97006 * 119.99921 * 180.02562 * 7 6 4 30 30 H 1.00899 * 111.00145 * 38.95329 * 12 2 1 31 31 H 1.08992 * 109.47514 * 179.97438 * 15 13 12 32 32 H 1.09001 * 109.47109 * 300.00022 * 15 13 12 33 33 H 1.09004 * 109.47086 * 59.99549 * 15 13 12 34 34 H 1.09000 * 109.46986 * 60.00086 * 17 16 13 35 35 H 1.09001 * 109.47601 * 300.00809 * 17 16 13 36 36 H 1.09001 * 109.46922 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47050 * 300.00004 * 19 18 17 39 39 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47289 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47611 * 59.99933 * 21 20 19 42 42 H 1.09000 * 109.47054 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47153 * 60.00008 * 23 18 17 44 44 H 1.08996 * 109.46952 * 180.02562 * 23 18 17 45 45 H 1.09002 * 109.47045 * 179.97438 * 24 22 21 46 46 H 1.08998 * 109.47171 * 299.99294 * 24 22 21 47 47 H 1.09001 * 109.46997 * 60.00088 * 25 16 13 48 48 H 1.09000 * 109.47054 * 300.00355 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 1 1.2578 0.9329 2.2907 15 6 3.4112 0.9808 2.3224 16 6 1.9771 -0.5797 3.6454 17 6 3.1348 -1.5769 3.7243 18 6 3.0290 -2.3796 5.0225 19 6 3.0942 -1.4269 6.2180 20 6 1.9364 -0.4297 6.1390 21 6 0.6078 -1.1880 6.1630 22 6 0.5427 -2.1407 4.9676 23 6 1.7004 -3.1379 5.0465 24 6 0.6484 -1.3380 3.6694 25 6 2.0420 0.3734 4.8405 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7089 1.1614 -3.4844 30 1 1.4495 -1.4980 1.4100 31 1 3.4577 1.6600 3.1735 32 1 4.2361 0.2704 2.3785 33 1 3.4863 1.5524 1.3973 34 1 4.0814 -1.0367 3.7068 35 1 3.0883 -2.2559 2.8728 36 1 3.8541 -3.0896 5.0788 37 1 3.0193 -1.9988 7.1428 38 1 4.0408 -0.8867 6.2009 39 1 1.9831 0.2493 6.9904 40 1 -0.2170 -0.4777 6.1072 41 1 0.5324 -1.7598 7.0879 42 1 -0.4041 -2.6806 4.9844 43 1 1.6540 -3.8166 4.1948 44 1 1.6249 -3.7093 5.9715 45 1 0.6025 -2.0168 2.8177 46 1 -0.1764 -0.6277 3.6131 47 1 1.2169 1.0835 4.7841 48 1 2.9883 0.9139 4.8232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:38 Heat of formation + Delta-G solvation = -49.743345 kcal Electronic energy + Delta-G solvation = -23815.591902 eV Core-core repulsion = 20867.482716 eV Total energy + Delta-G solvation = -2948.109186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.49944 -38.33015 -35.55747 -33.63867 -33.41525 -33.17322 -30.54602 -28.85247 -27.25432 -26.72480 -26.50802 -24.09083 -22.43347 -22.15928 -21.71804 -20.30746 -18.58928 -18.11385 -16.79364 -16.33959 -15.80222 -15.41511 -15.31502 -15.24012 -14.87114 -14.77098 -14.27526 -14.16390 -14.03258 -13.73284 -13.52379 -13.30287 -13.20414 -13.10921 -12.86982 -12.74863 -12.62248 -12.30050 -12.25778 -12.09672 -11.70899 -11.68073 -11.67284 -11.55081 -11.48630 -11.40014 -10.98934 -10.48680 -10.40931 -10.38386 -10.36070 -8.86074 -8.08574 -6.19223 1.40749 1.42340 1.54894 2.44239 3.19614 3.57729 3.64885 3.66002 3.74893 4.15334 4.26411 4.31683 4.37563 4.40141 4.42455 4.50239 4.53214 4.55224 4.64526 4.72395 4.76603 4.81001 4.84426 4.88984 4.93434 4.96763 4.99818 5.04660 5.15378 5.20647 5.23949 5.24362 5.25701 5.28795 5.30034 5.33741 5.43160 5.46815 5.49824 5.63118 5.67052 5.70196 5.77042 5.78361 5.87246 6.31355 6.72581 6.91533 7.00349 7.51072 8.97222 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.004678 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.448178 B = 5984.454165 C = 6025.767265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.219 3.781 3 H -0.002 1.002 4 C -0.509 4.509 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.677 5.677 13 C 0.093 3.907 14 H 0.011 0.989 15 C -0.131 4.131 16 C -0.041 4.041 17 C -0.092 4.092 18 C -0.086 4.086 19 C -0.103 4.103 20 C -0.082 4.082 21 C -0.104 4.104 22 C -0.081 4.081 23 C -0.105 4.105 24 C -0.106 4.106 25 C -0.101 4.101 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -4.771 20.371 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.110 3.890 3 H 0.016 0.984 4 C -0.548 4.548 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.308 5.308 13 C -0.017 4.017 14 H 0.029 0.971 15 C -0.189 4.189 16 C -0.042 4.042 17 C -0.130 4.130 18 C -0.104 4.104 19 C -0.140 4.140 20 C -0.100 4.100 21 C -0.142 4.142 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.141 -4.586 20.068 20.696 hybrid contribution -0.959 0.148 -1.434 1.732 sum 1.182 -4.438 18.634 19.192 Atomic orbital electron populations 1.22214 1.00515 0.98837 0.99619 1.18898 0.89512 0.92620 0.87973 0.98385 1.21484 1.30001 1.12205 0.91097 0.92886 1.25722 0.95561 0.95896 1.01888 1.70026 1.38320 1.24390 1.23771 0.85482 0.78042 0.78601 0.79325 1.19320 1.20637 1.20820 1.60783 1.57558 1.09278 1.03228 1.21486 0.96002 0.93591 0.90591 0.97145 1.21807 0.97577 0.99466 1.00016 1.20459 0.95467 0.95196 0.93035 1.21454 0.97141 0.97151 0.97209 1.21091 0.97611 0.96975 0.94720 1.21516 0.97938 0.96869 0.97667 1.21056 0.95276 0.96804 0.96876 1.21527 0.96986 0.97925 0.97731 1.21017 0.98664 0.96142 0.94143 1.21518 0.93992 0.96943 1.01760 1.21590 0.96416 0.98439 0.97903 1.21612 1.01625 0.96914 0.93779 0.92177 0.95238 0.96220 0.93135 0.85210 0.91076 0.92013 0.95824 0.92270 0.93164 0.90942 0.90774 0.91915 0.90130 0.92482 0.90597 0.91156 0.92970 0.90657 0.93410 0.93558 0.92970 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.65 8.92 71.98 0.64 -7.00 16 2 C 0.22 11.42 2.38 44.17 0.11 11.53 16 3 H 0.00 -0.10 7.11 -2.39 -0.02 -0.12 16 4 C -0.51 -29.04 8.84 25.60 0.23 -28.81 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.68 11.32 21.45 0.24 -54.43 16 8 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 N -0.68 -29.12 5.32 -473.31 -2.52 -31.64 16 13 C 0.09 3.38 1.73 44.91 0.08 3.45 16 14 H 0.01 0.42 7.11 -2.39 -0.02 0.41 16 15 C -0.13 -4.54 8.69 71.98 0.63 -3.92 16 16 C -0.04 -1.14 0.31 -52.18 -0.02 -1.16 16 17 C -0.09 -2.45 3.96 30.59 0.12 -2.33 16 18 C -0.09 -1.76 3.19 -10.79 -0.03 -1.80 16 19 C -0.10 -1.78 5.19 30.60 0.16 -1.62 16 20 C -0.08 -1.50 3.19 -10.78 -0.03 -1.54 16 21 C -0.10 -1.89 5.19 30.59 0.16 -1.73 16 22 C -0.08 -1.73 3.19 -10.80 -0.03 -1.76 16 23 C -0.10 -2.09 5.19 30.59 0.16 -1.93 16 24 C -0.11 -2.90 4.24 30.59 0.13 -2.77 16 25 C -0.10 -2.36 4.13 30.61 0.13 -2.24 16 26 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 27 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.02 0.88 7.43 -2.39 -0.02 0.86 16 29 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 30 H 0.33 13.62 5.74 -89.69 -0.52 13.10 16 31 H 0.07 2.03 6.43 -2.39 -0.02 2.02 16 32 H 0.06 2.08 6.43 -2.39 -0.02 2.06 16 33 H 0.02 0.93 7.43 -2.38 -0.02 0.92 16 34 H 0.06 1.60 6.43 -2.39 -0.02 1.59 16 35 H 0.05 1.57 7.48 -2.39 -0.02 1.55 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.48 6.21 -2.39 -0.01 1.46 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.54 6.43 -2.39 -0.02 1.52 16 Total: -1.00 -60.73 335.29 3.01 -57.71 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.40 Total: 24.07 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 2.86 Total: -42.78 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.28 Total: -86.07 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -60.73 3.01 -57.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.971 kcal (2) G-P(sol) polarization free energy of solvation -60.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds