Wall clock time and date at job start Mon Mar 30 2020 07:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47016 * 270.00001 * 3 2 1 5 5 H 1.48502 * 109.46856 * 30.00226 * 3 2 1 6 6 H 1.48499 * 109.46957 * 150.00345 * 3 2 1 7 7 C 1.37879 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00171 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49213 * 300.02589 * 9 7 2 11 11 O 1.42907 * 109.48061 * 60.05363 * 9 7 2 12 12 C 1.42905 * 114.09546 * 181.14233 * 11 9 7 13 13 H 1.09005 * 109.49276 * 58.83147 * 12 11 9 14 14 C 1.53002 * 109.48107 * 178.85685 * 12 11 9 15 15 O 1.42896 * 109.47116 * 294.94633 * 14 12 11 16 16 C 1.53087 * 109.41673 * 298.84477 * 12 11 9 17 17 H 1.08998 * 109.57515 * 177.55069 * 16 12 11 18 18 O 1.42908 * 109.51944 * 297.70232 * 16 12 11 19 19 C 1.53175 * 109.16633 * 57.60896 * 16 12 11 20 20 H 1.08998 * 109.54621 * 62.88778 * 19 16 12 21 21 O 1.42900 * 109.54509 * 183.15667 * 19 16 12 22 22 C 1.53092 * 109.48460 * 180.02562 * 9 7 2 23 23 H 1.08998 * 109.57611 * 62.46268 * 22 9 7 24 24 O 1.42903 * 109.51497 * 302.31256 * 22 9 7 25 25 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46973 * 54.94441 * 14 12 11 27 27 H 1.08995 * 109.47124 * 174.93896 * 14 12 11 28 28 H 0.96706 * 114.00081 * 179.97438 * 15 14 12 29 29 H 0.96701 * 113.99657 * 179.68278 * 18 16 12 30 30 H 0.96703 * 114.00096 * 179.55633 * 21 19 16 31 31 H 0.96700 * 114.00311 * 60.31556 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6236 -2.5576 0.8877 11 8 0.4308 -2.5748 -1.1695 12 6 -0.3505 -3.7682 -1.2573 13 1 -0.9990 -3.8433 -0.3844 14 6 -1.2050 -3.7264 -2.5257 15 8 -2.1530 -2.6617 -2.4266 16 6 0.5798 -4.9829 -1.3081 17 1 -0.0138 -5.8968 -1.3313 18 8 1.3937 -4.9123 -2.4807 19 6 1.4735 -4.9844 -0.0641 20 1 0.8561 -5.0881 0.8283 21 8 2.3953 -6.0737 -0.1389 22 6 2.2457 -3.6630 -0.0015 23 1 2.8432 -3.6325 0.9097 24 8 3.1041 -3.5576 -1.1391 25 1 -0.4850 0.8400 0.0004 26 1 -0.5630 -3.5617 -3.3911 27 1 -1.7326 -4.6733 -2.6398 28 1 -2.7298 -2.5756 -3.1979 29 1 2.0122 -5.6496 -2.5750 30 1 2.9982 -6.1313 0.6150 31 1 3.6247 -2.7431 -1.1650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040646400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:19 Heat of formation + Delta-G solvation = -233.232207 kcal Electronic energy + Delta-G solvation = -18332.799672 eV Core-core repulsion = 15193.964377 eV Total energy + Delta-G solvation = -3138.835295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35022 -36.50850 -35.78726 -35.23743 -34.33615 -32.54460 -30.05723 -29.53676 -26.62907 -24.55666 -22.13223 -21.04755 -19.48884 -17.23696 -17.02561 -16.61261 -16.44479 -15.72324 -15.60927 -14.76910 -14.20890 -14.11550 -13.64245 -13.27345 -12.82475 -12.76447 -12.41539 -11.96727 -11.52648 -11.38917 -10.92571 -10.79456 -10.66446 -10.25345 -9.89331 -9.73916 -9.57419 -9.44726 -8.95507 -8.88617 -8.53958 -7.75604 -6.04024 -4.20202 3.29811 3.36655 3.37163 4.21027 4.37477 4.63841 4.92103 5.05582 5.16228 5.28427 5.42331 5.49922 5.79811 5.87071 5.90131 6.01603 6.16186 6.21569 6.42565 6.59466 6.59888 7.18947 7.79599 7.81619 8.09906 8.23417 8.32761 8.60980 8.70661 9.10759 9.50675 11.02635 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.011532 C = 0.008692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.405185 B = 2427.470454 C = 3220.759051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.082 3.918 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.193 3.807 10 H 0.015 0.985 11 O -0.319 6.319 12 C 0.092 3.908 13 H 0.057 0.943 14 C 0.096 3.904 15 O -0.554 6.554 16 C 0.099 3.901 17 H 0.047 0.953 18 O -0.527 6.527 19 C 0.075 3.925 20 H 0.065 0.935 21 O -0.565 6.565 22 C 0.057 3.943 23 H 0.042 0.958 24 O -0.541 6.541 25 H 0.263 0.737 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.366 0.634 29 H 0.370 0.630 30 H 0.376 0.624 31 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 -9.087 -0.952 9.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.126 4.126 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.136 3.864 10 H 0.033 0.967 11 O -0.237 6.237 12 C 0.032 3.968 13 H 0.075 0.925 14 C 0.018 3.982 15 O -0.357 6.357 16 C 0.039 3.961 17 H 0.065 0.935 18 O -0.331 6.331 19 C 0.016 3.984 20 H 0.083 0.917 21 O -0.370 6.370 22 C -0.003 4.003 23 H 0.060 0.940 24 O -0.346 6.346 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.211 0.789 29 H 0.216 0.784 30 H 0.223 0.777 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.637 -8.879 -1.293 8.995 hybrid contribution 0.969 0.652 0.581 1.305 sum 0.332 -8.226 -0.712 8.264 Atomic orbital electron populations 1.70054 1.05950 1.26754 1.45245 1.25048 0.94791 0.99293 0.93460 0.86589 0.79768 0.83222 0.78330 1.20343 1.21108 1.19805 1.20696 0.92274 0.89467 1.54790 0.91903 1.20332 0.87706 0.92638 0.85698 0.96706 1.88522 1.56622 1.33756 1.44832 1.21810 0.91166 0.86948 0.96836 0.92506 1.21924 0.89791 0.88336 0.98149 1.86705 1.50409 1.54091 1.44525 1.22326 0.91165 0.97981 0.84656 0.93475 1.86590 1.54260 1.51163 1.41038 1.22769 0.90992 0.85856 0.98787 0.91728 1.86342 1.50831 1.50282 1.49560 1.23048 0.93189 0.95594 0.88496 0.93974 1.86398 1.58486 1.44406 1.45329 0.92736 0.92391 0.94220 0.78913 0.78395 0.77722 0.78006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.23 12.84 55.43 0.71 -24.51 16 2 C 0.08 2.31 5.40 -17.82 -0.10 2.22 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.69 8.20 -34.44 -0.28 -14.97 16 8 H 0.06 1.63 6.79 -52.48 -0.36 1.27 16 9 C 0.19 4.95 2.28 -27.84 -0.06 4.89 16 10 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 11 O -0.32 -8.58 9.27 -58.49 -0.54 -9.12 16 12 C 0.09 2.01 2.71 -26.68 -0.07 1.94 16 13 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.10 1.85 6.47 37.16 0.24 2.09 16 15 O -0.55 -11.21 13.63 -40.01 -0.55 -11.75 16 16 C 0.10 1.88 3.03 -26.60 -0.08 1.80 16 17 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 18 O -0.53 -10.45 10.82 -65.33 -0.71 -11.15 16 19 C 0.08 1.37 3.20 -26.55 -0.08 1.29 16 20 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 21 O -0.56 -9.01 12.57 -57.82 -0.73 -9.74 16 22 C 0.06 1.20 3.00 -26.59 -0.08 1.12 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 O -0.54 -11.74 11.29 -65.33 -0.74 -12.48 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.06 1.17 7.79 -51.93 -0.40 0.76 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.37 5.13 9.12 45.56 0.42 5.55 16 29 H 0.37 6.35 8.52 45.56 0.39 6.74 16 30 H 0.38 4.52 9.08 45.56 0.41 4.93 16 31 H 0.37 7.75 7.50 45.56 0.34 8.09 16 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -34.74 261.53 -5.02 -39.76 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.87 Total: 18.49 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.52 Total: 0.37 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.71 Total: -24.51 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -3.26 Total: -54.25 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.74 -5.02 -39.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.469 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds