Wall clock time and date at job start Mon Mar 30 2020 07:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47016 * 270.00001 * 3 2 1 5 5 H 1.48502 * 109.46856 * 30.00226 * 3 2 1 6 6 H 1.48499 * 109.46957 * 150.00345 * 3 2 1 7 7 C 1.37879 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00171 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49213 * 300.02589 * 9 7 2 11 11 O 1.42907 * 109.48061 * 60.05363 * 9 7 2 12 12 C 1.42905 * 114.09546 * 181.14233 * 11 9 7 13 13 H 1.09005 * 109.49276 * 58.83147 * 12 11 9 14 14 C 1.53002 * 109.48107 * 178.85685 * 12 11 9 15 15 O 1.42896 * 109.47116 * 294.94633 * 14 12 11 16 16 C 1.53087 * 109.41673 * 298.84477 * 12 11 9 17 17 H 1.08998 * 109.57515 * 177.55069 * 16 12 11 18 18 O 1.42908 * 109.51944 * 297.70232 * 16 12 11 19 19 C 1.53175 * 109.16633 * 57.60896 * 16 12 11 20 20 H 1.08998 * 109.54621 * 62.88778 * 19 16 12 21 21 O 1.42900 * 109.54509 * 183.15667 * 19 16 12 22 22 C 1.53092 * 109.48460 * 180.02562 * 9 7 2 23 23 H 1.08998 * 109.57611 * 62.46268 * 22 9 7 24 24 O 1.42903 * 109.51497 * 302.31256 * 22 9 7 25 25 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46973 * 54.94441 * 14 12 11 27 27 H 1.08995 * 109.47124 * 174.93896 * 14 12 11 28 28 H 0.96706 * 114.00081 * 179.97438 * 15 14 12 29 29 H 0.96701 * 113.99657 * 179.68278 * 18 16 12 30 30 H 0.96703 * 114.00096 * 179.55633 * 21 19 16 31 31 H 0.96700 * 114.00311 * 60.31556 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6236 -2.5576 0.8877 11 8 0.4308 -2.5748 -1.1695 12 6 -0.3505 -3.7682 -1.2573 13 1 -0.9990 -3.8433 -0.3844 14 6 -1.2050 -3.7264 -2.5257 15 8 -2.1530 -2.6617 -2.4266 16 6 0.5798 -4.9829 -1.3081 17 1 -0.0138 -5.8968 -1.3313 18 8 1.3937 -4.9123 -2.4807 19 6 1.4735 -4.9844 -0.0641 20 1 0.8561 -5.0881 0.8283 21 8 2.3953 -6.0737 -0.1389 22 6 2.2457 -3.6630 -0.0015 23 1 2.8432 -3.6325 0.9097 24 8 3.1041 -3.5576 -1.1391 25 1 -0.4850 0.8400 0.0004 26 1 -0.5630 -3.5617 -3.3911 27 1 -1.7326 -4.6733 -2.6398 28 1 -2.7298 -2.5756 -3.1979 29 1 2.0122 -5.6496 -2.5750 30 1 2.9982 -6.1313 0.6150 31 1 3.6247 -2.7431 -1.1650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040646400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:18 Heat of formation + Delta-G solvation = -266.808740 kcal Electronic energy + Delta-G solvation = -18334.255660 eV Core-core repulsion = 15193.964377 eV Total energy + Delta-G solvation = -3140.291283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96334 -38.02055 -37.41888 -36.74327 -35.97253 -34.59484 -31.70183 -31.24046 -28.46112 -26.27846 -23.85769 -22.72789 -21.10723 -19.00818 -18.64592 -18.12987 -17.96425 -17.44654 -17.25418 -16.61229 -16.03949 -15.71142 -15.16742 -14.88279 -14.58039 -14.30986 -14.05301 -13.57490 -13.22507 -13.08794 -12.80832 -12.66080 -12.32088 -12.03543 -11.55470 -11.49984 -11.04388 -11.03122 -10.78016 -10.59806 -10.45058 -9.59538 -8.14900 -6.37451 1.41111 1.43894 1.52818 2.39295 2.84432 2.94297 3.29450 3.50778 3.60410 3.80324 3.81836 3.96236 4.26518 4.33436 4.37745 4.48384 4.53108 4.61504 4.87289 4.95068 5.00919 5.20356 5.68643 6.05884 6.60769 6.70394 6.92546 7.00245 7.01311 7.24382 7.39387 8.92421 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.011532 C = 0.008692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.405185 B = 2427.470454 C = 3220.759051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.188 3.812 10 H -0.017 1.017 11 O -0.357 6.357 12 C 0.076 3.924 13 H 0.049 0.951 14 C 0.099 3.901 15 O -0.586 6.586 16 C 0.103 3.897 17 H 0.082 0.918 18 O -0.544 6.544 19 C 0.082 3.918 20 H 0.079 0.921 21 O -0.560 6.560 22 C 0.062 3.938 23 H 0.055 0.945 24 O -0.544 6.544 25 H 0.261 0.739 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.390 0.610 29 H 0.382 0.618 30 H 0.395 0.605 31 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -10.222 -1.099 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.588 4.588 8 H 0.091 0.909 9 C 0.131 3.869 10 H 0.001 0.999 11 O -0.276 6.276 12 C 0.017 3.983 13 H 0.066 0.934 14 C 0.022 3.978 15 O -0.393 6.393 16 C 0.043 3.957 17 H 0.100 0.900 18 O -0.349 6.349 19 C 0.023 3.977 20 H 0.097 0.903 21 O -0.368 6.368 22 C 0.002 3.998 23 H 0.073 0.927 24 O -0.349 6.349 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.239 0.761 29 H 0.229 0.771 30 H 0.245 0.755 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.216 -10.043 -1.440 10.148 hybrid contribution 0.688 0.935 0.618 1.315 sum 0.904 -9.107 -0.822 9.189 Atomic orbital electron populations 1.70214 1.07740 1.27382 1.47226 1.25954 0.95573 1.03153 0.93148 0.85488 0.78929 0.78584 0.78136 1.20525 1.20891 1.18078 1.21198 0.93074 0.90677 1.53853 0.90875 1.20257 0.88119 0.94109 0.84393 0.99948 1.88401 1.57654 1.36802 1.44714 1.22162 0.91646 0.86657 0.97841 0.93357 1.21969 0.89643 0.89991 0.96206 1.86642 1.51123 1.54950 1.46562 1.22237 0.91170 0.97656 0.84677 0.90040 1.86559 1.54807 1.52164 1.41381 1.22592 0.91047 0.84875 0.99207 0.90282 1.86311 1.50941 1.48661 1.50925 1.22989 0.92341 0.95612 0.88858 0.92729 1.86395 1.58377 1.44372 1.45785 0.93054 0.93718 0.89780 0.76112 0.77064 0.75505 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.54 12.84 21.45 0.28 -54.26 16 2 C 0.03 1.44 5.40 84.65 0.46 1.90 16 3 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.55 -30.51 8.20 25.60 0.21 -30.30 16 8 H 0.07 3.76 6.79 -2.91 -0.02 3.74 16 9 C 0.19 9.78 2.28 29.88 0.07 9.85 16 10 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 11 O -0.36 -19.45 9.27 -126.74 -1.17 -20.62 16 12 C 0.08 3.28 2.71 30.62 0.08 3.37 16 13 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 14 C 0.10 3.71 6.47 71.98 0.47 4.18 16 15 O -0.59 -23.51 13.63 -144.41 -1.97 -25.48 16 16 C 0.10 3.65 3.03 30.68 0.09 3.75 16 17 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 18 O -0.54 -20.42 10.82 -120.20 -1.30 -21.72 16 19 C 0.08 2.82 3.20 30.71 0.10 2.92 16 20 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 21 O -0.56 -15.94 12.57 -127.39 -1.60 -17.54 16 22 C 0.06 2.56 3.00 30.68 0.09 2.65 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 O -0.54 -22.91 11.29 -120.20 -1.36 -24.27 16 25 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.04 1.77 7.79 -2.39 -0.02 1.75 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.39 10.63 9.12 -74.05 -0.68 9.96 16 29 H 0.38 12.08 8.52 -74.06 -0.63 11.45 16 30 H 0.39 8.05 9.08 -74.05 -0.67 7.38 16 31 H 0.37 15.24 7.50 -74.06 -0.56 14.68 16 Total: -1.00 -75.18 261.53 -4.87 -80.05 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: -1.34 Total: 39.52 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 1.57 Total: -1.70 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.26 kcal Atomic # 8 Polarization: -102.23 SS G_CDS: -7.40 Total: -109.63 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -75.18 -4.87 -80.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.756 kcal (2) G-P(sol) polarization free energy of solvation -75.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds