Wall clock time and date at job start Mon Mar 30 2020 07:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99746 * 2 1 4 4 H 1.48501 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47415 * 300.00102 * 3 2 1 6 6 H 1.48498 * 109.47239 * 60.00160 * 3 2 1 7 7 C 1.37874 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99852 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.48378 * 60.02658 * 9 7 2 11 11 O 1.42904 * 109.48417 * 300.00105 * 9 7 2 12 12 C 1.42907 * 114.09490 * 301.17899 * 11 9 7 13 13 H 1.09002 * 109.48112 * 58.82267 * 12 11 9 14 14 C 1.53006 * 109.47678 * 178.84601 * 12 11 9 15 15 O 1.42900 * 109.46941 * 294.97567 * 14 12 11 16 16 C 1.53092 * 109.41748 * 298.83754 * 12 11 9 17 17 H 1.08995 * 109.52379 * 177.51542 * 16 12 11 18 18 O 1.42903 * 109.52287 * 297.70854 * 16 12 11 19 19 C 1.53178 * 109.16048 * 57.60987 * 16 12 11 20 20 H 1.09005 * 109.61850 * 62.93333 * 19 16 12 21 21 O 1.42900 * 109.54294 * 183.15574 * 19 16 12 22 22 C 1.53097 * 109.47791 * 180.02562 * 9 7 2 23 23 H 1.09001 * 109.51822 * 302.46790 * 22 9 7 24 24 O 1.42902 * 109.52381 * 182.28032 * 22 9 7 25 25 H 0.96997 * 120.00331 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47061 * 54.97674 * 14 12 11 27 27 H 1.08997 * 109.46811 * 174.97575 * 14 12 11 28 28 H 0.96695 * 113.99700 * 180.02562 * 15 14 12 29 29 H 0.96693 * 113.99977 * 179.97438 * 18 16 12 30 30 H 0.96696 * 114.00123 * 179.56221 * 21 19 16 31 31 H 0.96707 * 113.99666 * 59.99907 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5571 -0.8904 11 8 0.4297 -2.5753 1.1665 12 6 1.1526 -2.4822 2.3957 13 1 1.6963 -1.5380 2.4270 14 6 0.1734 -2.5464 3.5696 15 8 -0.6770 -1.3982 3.5438 16 6 2.1433 -3.6453 2.4929 17 1 2.7265 -3.5515 3.4089 18 8 1.4279 -4.8823 2.5052 19 6 3.0817 -3.6089 1.2827 20 1 3.6648 -2.6880 1.2993 21 8 3.9625 -4.7333 1.3268 22 6 2.2457 -3.6629 -0.0005 23 1 2.9016 -3.5814 -0.8673 24 8 1.5329 -4.9004 -0.0541 25 1 -0.4850 0.8400 0.0004 26 1 -0.4323 -3.4490 3.4885 27 1 0.7301 -2.5653 4.5064 28 1 -1.3246 -1.3723 4.2614 29 1 1.9943 -5.6636 2.5650 30 1 4.5815 -4.7774 0.5852 31 1 0.9773 -5.0005 -0.8393 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040646402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:20 Heat of formation + Delta-G solvation = -233.872500 kcal Electronic energy + Delta-G solvation = -18544.599919 eV Core-core repulsion = 15405.736858 eV Total energy + Delta-G solvation = -3138.863061 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31948 -36.40673 -35.71018 -35.16664 -34.47585 -32.40178 -29.94715 -29.64822 -26.31407 -24.45033 -22.23380 -21.14136 -19.29149 -17.21638 -16.75575 -16.48867 -16.28966 -16.02651 -15.45136 -14.66599 -14.26660 -13.71553 -13.47335 -13.25281 -12.84252 -12.70563 -12.30423 -11.95828 -11.72051 -11.23920 -10.97752 -10.83694 -10.59774 -10.35215 -10.01011 -9.58949 -9.48850 -9.34279 -8.90242 -8.75189 -8.52924 -7.72533 -6.03975 -4.24318 3.24225 3.32968 3.34290 4.33343 4.36180 4.79732 5.03856 5.10830 5.29813 5.42344 5.45458 5.60509 5.89886 6.04157 6.08015 6.13580 6.23424 6.31856 6.56138 6.65142 6.98011 7.49400 7.74607 7.95069 8.02989 8.33055 8.38679 8.41767 8.75699 9.02604 9.49878 10.99348 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.012680 C = 0.010094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.210525 B = 2207.625761 C = 2773.156736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.086 3.914 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.581 4.581 8 H 0.056 0.944 9 C 0.190 3.810 10 H 0.064 0.936 11 O -0.338 6.338 12 C 0.117 3.883 13 H 0.079 0.921 14 C 0.092 3.908 15 O -0.550 6.550 16 C 0.098 3.902 17 H 0.046 0.954 18 O -0.534 6.534 19 C 0.087 3.913 20 H 0.080 0.920 21 O -0.571 6.571 22 C 0.053 3.947 23 H 0.044 0.956 24 O -0.548 6.548 25 H 0.262 0.738 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.362 0.638 29 H 0.368 0.632 30 H 0.374 0.626 31 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -5.582 4.028 7.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.618 4.618 8 H 0.074 0.926 9 C 0.133 3.867 10 H 0.082 0.918 11 O -0.256 6.256 12 C 0.058 3.942 13 H 0.096 0.904 14 C 0.014 3.986 15 O -0.353 6.353 16 C 0.038 3.962 17 H 0.064 0.936 18 O -0.338 6.338 19 C 0.029 3.971 20 H 0.097 0.903 21 O -0.377 6.377 22 C -0.006 4.006 23 H 0.062 0.938 24 O -0.351 6.351 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.206 0.794 29 H 0.214 0.786 30 H 0.220 0.780 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.452 -5.166 4.559 7.707 hybrid contribution 1.118 0.818 -0.628 1.521 sum 4.570 -4.348 3.931 7.432 Atomic orbital electron populations 1.70053 1.05803 1.26593 1.44896 1.24988 0.94667 0.98981 0.93606 0.86678 0.80140 0.84137 0.77872 1.19751 1.20802 1.20674 1.21403 0.92865 0.91054 1.56482 0.92589 1.20323 0.89131 0.90702 0.86553 0.91814 1.88052 1.33245 1.92839 1.11489 1.21546 0.91412 0.94196 0.87087 0.90353 1.21998 0.92516 0.88466 0.95573 1.86769 1.50515 1.44395 1.53615 1.22392 0.92349 0.87184 0.94257 0.93598 1.86558 1.35990 1.14440 1.96781 1.22649 0.90082 0.88559 0.95835 0.90253 1.86325 1.51400 1.49036 1.50922 1.23174 0.94868 0.86521 0.96037 0.93791 1.86553 1.63591 1.37439 1.47549 0.92769 0.92929 0.94321 0.79353 0.78647 0.77964 0.79260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.49 12.84 55.43 0.71 -23.78 16 2 C 0.09 2.36 5.40 -17.82 -0.10 2.26 16 3 Si 0.88 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.58 -15.32 6.59 -34.44 -0.23 -15.54 16 8 H 0.06 1.43 6.87 -52.49 -0.36 1.07 16 9 C 0.19 4.77 2.81 -27.83 -0.08 4.69 16 10 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 11 O -0.34 -8.95 9.46 -58.50 -0.55 -9.50 16 12 C 0.12 2.68 2.44 -26.68 -0.06 2.62 16 13 H 0.08 1.96 7.09 -51.93 -0.37 1.59 16 14 C 0.09 1.85 6.47 37.16 0.24 2.09 16 15 O -0.55 -11.59 13.63 -40.04 -0.55 -12.13 16 16 C 0.10 1.97 3.03 -26.59 -0.08 1.89 16 17 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 18 O -0.53 -10.66 10.82 -65.33 -0.71 -11.36 16 19 C 0.09 1.71 2.95 -26.51 -0.08 1.63 16 20 H 0.08 1.58 6.85 -51.93 -0.36 1.23 16 21 O -0.57 -9.67 12.58 -57.79 -0.73 -10.40 16 22 C 0.05 1.12 2.97 -26.55 -0.08 1.04 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 24 O -0.55 -10.99 11.34 -65.31 -0.74 -11.74 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.05 1.06 7.79 -51.93 -0.40 0.66 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.36 5.32 9.12 45.56 0.42 5.74 16 29 H 0.37 6.39 8.53 45.56 0.39 6.78 16 30 H 0.37 4.88 9.08 45.56 0.41 5.30 16 31 H 0.36 6.16 9.08 45.56 0.41 6.58 16 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -33.71 259.46 -4.82 -38.53 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -0.68 Total: 19.99 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.46 Total: 0.68 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.71 Total: -23.78 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -3.27 Total: -55.14 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.71 -4.82 -38.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.339 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds