Wall clock time and date at job start Mon Mar 30 2020 07:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99746 * 2 1 4 4 H 1.48501 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47415 * 300.00102 * 3 2 1 6 6 H 1.48498 * 109.47239 * 60.00160 * 3 2 1 7 7 C 1.37874 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99852 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.48378 * 60.02658 * 9 7 2 11 11 O 1.42904 * 109.48417 * 300.00105 * 9 7 2 12 12 C 1.42907 * 114.09490 * 301.17899 * 11 9 7 13 13 H 1.09002 * 109.48112 * 58.82267 * 12 11 9 14 14 C 1.53006 * 109.47678 * 178.84601 * 12 11 9 15 15 O 1.42900 * 109.46941 * 294.97567 * 14 12 11 16 16 C 1.53092 * 109.41748 * 298.83754 * 12 11 9 17 17 H 1.08995 * 109.52379 * 177.51542 * 16 12 11 18 18 O 1.42903 * 109.52287 * 297.70854 * 16 12 11 19 19 C 1.53178 * 109.16048 * 57.60987 * 16 12 11 20 20 H 1.09005 * 109.61850 * 62.93333 * 19 16 12 21 21 O 1.42900 * 109.54294 * 183.15574 * 19 16 12 22 22 C 1.53097 * 109.47791 * 180.02562 * 9 7 2 23 23 H 1.09001 * 109.51822 * 302.46790 * 22 9 7 24 24 O 1.42902 * 109.52381 * 182.28032 * 22 9 7 25 25 H 0.96997 * 120.00331 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47061 * 54.97674 * 14 12 11 27 27 H 1.08997 * 109.46811 * 174.97575 * 14 12 11 28 28 H 0.96695 * 113.99700 * 180.02562 * 15 14 12 29 29 H 0.96693 * 113.99977 * 179.97438 * 18 16 12 30 30 H 0.96696 * 114.00123 * 179.56221 * 21 19 16 31 31 H 0.96707 * 113.99666 * 59.99907 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5571 -0.8904 11 8 0.4297 -2.5753 1.1665 12 6 1.1526 -2.4822 2.3957 13 1 1.6963 -1.5380 2.4270 14 6 0.1734 -2.5464 3.5696 15 8 -0.6770 -1.3982 3.5438 16 6 2.1433 -3.6453 2.4929 17 1 2.7265 -3.5515 3.4089 18 8 1.4279 -4.8823 2.5052 19 6 3.0817 -3.6089 1.2827 20 1 3.6648 -2.6880 1.2993 21 8 3.9625 -4.7333 1.3268 22 6 2.2457 -3.6629 -0.0005 23 1 2.9016 -3.5814 -0.8673 24 8 1.5329 -4.9004 -0.0541 25 1 -0.4850 0.8400 0.0004 26 1 -0.4323 -3.4490 3.4885 27 1 0.7301 -2.5653 4.5064 28 1 -1.3246 -1.3723 4.2614 29 1 1.9943 -5.6636 2.5650 30 1 4.5815 -4.7774 0.5852 31 1 0.9773 -5.0005 -0.8393 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040646402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:20 Heat of formation + Delta-G solvation = -266.623703 kcal Electronic energy + Delta-G solvation = -18546.020117 eV Core-core repulsion = 15405.736858 eV Total energy + Delta-G solvation = -3140.283259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97991 -37.97482 -37.34434 -36.72812 -36.07150 -34.42939 -31.61280 -31.39918 -28.12089 -26.22865 -23.99860 -22.79904 -21.00688 -18.90666 -18.39093 -18.01820 -17.94208 -17.74561 -17.12168 -16.58940 -15.90483 -15.43830 -15.12591 -14.88167 -14.54383 -14.32607 -13.94060 -13.73338 -13.36906 -12.95249 -12.84984 -12.71915 -12.27418 -12.07930 -11.70860 -11.33994 -11.01200 -10.90906 -10.73670 -10.48065 -10.43700 -9.57438 -8.10450 -6.36003 1.38336 1.40690 1.50722 2.38323 2.92908 3.05870 3.31714 3.54216 3.62610 3.83535 3.89159 4.04693 4.36328 4.40505 4.49713 4.54546 4.61291 4.69568 4.93236 5.01629 5.24298 5.51163 5.68224 6.01889 6.65082 6.74503 6.93849 7.01585 7.05221 7.17921 7.43039 8.93142 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.012680 C = 0.010094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.210525 B = 2207.625761 C = 2773.156736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.034 3.966 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.580 4.580 8 H 0.064 0.936 9 C 0.184 3.816 10 H 0.030 0.970 11 O -0.369 6.369 12 C 0.108 3.892 13 H 0.051 0.949 14 C 0.095 3.905 15 O -0.582 6.582 16 C 0.102 3.898 17 H 0.073 0.927 18 O -0.544 6.544 19 C 0.094 3.906 20 H 0.075 0.925 21 O -0.566 6.566 22 C 0.063 3.937 23 H 0.056 0.944 24 O -0.551 6.551 25 H 0.259 0.741 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.387 0.613 29 H 0.380 0.620 30 H 0.393 0.607 31 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -6.102 4.837 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.170 4.170 3 Si 0.773 3.227 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.617 4.617 8 H 0.082 0.918 9 C 0.127 3.873 10 H 0.047 0.953 11 O -0.288 6.288 12 C 0.049 3.951 13 H 0.069 0.931 14 C 0.017 3.983 15 O -0.389 6.389 16 C 0.042 3.958 17 H 0.091 0.909 18 O -0.349 6.349 19 C 0.035 3.965 20 H 0.093 0.907 21 O -0.374 6.374 22 C 0.004 3.996 23 H 0.074 0.926 24 O -0.356 6.356 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.235 0.765 29 H 0.228 0.772 30 H 0.242 0.758 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.114 -5.713 5.365 9.358 hybrid contribution 0.584 0.903 -0.878 1.388 sum 5.698 -4.810 4.487 8.703 Atomic orbital electron populations 1.70204 1.07525 1.27099 1.46992 1.25785 0.95319 1.02492 0.93412 0.85679 0.79549 0.79939 0.77522 1.18200 1.20500 1.21095 1.21715 0.93240 0.91751 1.55000 0.91814 1.20267 0.89255 0.92322 0.85452 0.95272 1.87972 1.34817 1.93143 1.12856 1.21728 0.92390 0.94374 0.86626 0.93104 1.22041 0.92320 0.87858 0.96033 1.86703 1.51675 1.44951 1.55579 1.22241 0.91661 0.86262 0.95651 0.90945 1.86525 1.36685 1.14857 1.96870 1.22418 0.90133 0.89207 0.94739 0.90716 1.86293 1.51333 1.47691 1.52040 1.22989 0.94021 0.85041 0.97578 0.92585 1.86515 1.63860 1.36665 1.48589 0.93169 0.93341 0.90466 0.76453 0.77214 0.75766 0.77906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.76 12.84 21.45 0.28 -52.49 16 2 C 0.03 1.89 5.40 84.65 0.46 2.35 16 3 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.58 -30.61 6.59 25.60 0.17 -30.44 16 8 H 0.06 3.19 6.87 -2.91 -0.02 3.17 16 9 C 0.18 9.34 2.81 29.88 0.08 9.42 16 10 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 11 O -0.37 -19.76 9.46 -126.73 -1.20 -20.96 16 12 C 0.11 4.87 2.44 30.63 0.07 4.95 16 13 H 0.05 2.55 7.09 -2.39 -0.02 2.54 16 14 C 0.10 3.69 6.47 71.98 0.47 4.16 16 15 O -0.58 -24.26 13.63 -144.38 -1.97 -26.23 16 16 C 0.10 3.85 3.03 30.68 0.09 3.94 16 17 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 18 O -0.54 -20.43 10.82 -120.20 -1.30 -21.73 16 19 C 0.09 3.47 2.95 30.74 0.09 3.56 16 20 H 0.08 2.82 6.85 -2.38 -0.02 2.81 16 21 O -0.57 -17.20 12.58 -127.41 -1.60 -18.80 16 22 C 0.06 2.57 2.97 30.71 0.09 2.66 16 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 24 O -0.55 -21.31 11.34 -120.22 -1.36 -22.68 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.05 1.90 7.79 -2.39 -0.02 1.88 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.39 11.00 9.12 -74.06 -0.68 10.33 16 29 H 0.38 12.08 8.53 -74.06 -0.63 11.45 16 30 H 0.39 8.80 9.08 -74.06 -0.67 8.13 16 31 H 0.37 12.41 9.08 -74.05 -0.67 11.74 16 Total: -1.00 -71.97 259.46 -5.06 -77.03 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -1.45 Total: 40.38 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 1.52 Total: 0.60 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.28 Total: -52.49 kcal Atomic # 8 Polarization: -102.97 SS G_CDS: -7.43 Total: -110.40 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.97 -5.06 -77.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.594 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds