Wall clock time and date at job start Mon Mar 30 2020 07:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48496 * 109.46987 * 269.99919 * 3 2 1 5 5 H 1.48501 * 109.46979 * 29.99239 * 3 2 1 6 6 H 1.48499 * 109.47026 * 149.99576 * 3 2 1 7 7 C 1.37884 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99579 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.48628 * 299.97146 * 9 7 2 11 11 O 1.42904 * 109.48198 * 60.00174 * 9 7 2 12 12 C 1.42907 * 114.09490 * 181.13819 * 11 9 7 13 13 H 1.09002 * 109.48112 * 58.82267 * 12 11 9 14 14 C 1.53006 * 109.47678 * 178.84601 * 12 11 9 15 15 O 1.42900 * 109.46941 * 294.97567 * 14 12 11 16 16 C 1.53092 * 109.41748 * 298.83754 * 12 11 9 17 17 H 1.08995 * 109.52379 * 177.51542 * 16 12 11 18 18 O 1.42903 * 109.52287 * 297.70854 * 16 12 11 19 19 C 1.53178 * 109.16048 * 57.60987 * 16 12 11 20 20 H 1.09005 * 109.61850 * 62.93333 * 19 16 12 21 21 O 1.42900 * 109.54294 * 183.15574 * 19 16 12 22 22 C 1.53097 * 109.47834 * 179.97438 * 9 7 2 23 23 H 1.09002 * 109.52227 * 302.31913 * 22 9 7 24 24 O 1.42902 * 109.52039 * 62.50280 * 22 9 7 25 25 H 0.96996 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47061 * 54.97674 * 14 12 11 27 27 H 1.08997 * 109.46811 * 174.97575 * 14 12 11 28 28 H 0.96695 * 113.99700 * 180.02562 * 15 14 12 29 29 H 0.96693 * 113.99977 * 179.97438 * 18 16 12 30 30 H 0.96696 * 114.00123 * 179.56221 * 21 19 16 31 31 H 0.96703 * 113.99936 * 300.00059 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6243 -2.5571 0.8905 11 8 0.4299 -2.5753 -1.1665 12 6 -0.3515 -3.7687 -1.2532 13 1 -0.9992 -3.8434 -0.3797 14 6 -1.2072 -3.7272 -2.5209 15 8 -2.1547 -2.6621 -2.4214 16 6 0.5788 -4.9835 -1.3044 17 1 -0.0157 -5.8968 -1.3261 18 8 1.3917 -4.9133 -2.4776 19 6 1.4735 -4.9844 -0.0611 20 1 0.8581 -5.0885 0.8325 21 8 2.3953 -6.0737 -0.1363 22 6 2.2457 -3.6629 0.0005 23 1 2.8999 -3.5830 -0.8677 24 8 3.0287 -3.6219 1.1953 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5660 -3.5634 -3.3869 27 1 -1.7354 -4.6740 -2.6338 28 1 -2.7326 -2.5766 -3.1919 29 1 2.0070 -5.6529 -2.5746 30 1 2.9987 -6.1311 0.6171 31 1 3.5414 -2.8089 1.3018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040646404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:22 Heat of formation + Delta-G solvation = -240.404291 kcal Electronic energy + Delta-G solvation = -18151.819674 eV Core-core repulsion = 15012.673374 eV Total energy + Delta-G solvation = -3139.146300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.43083 -36.64294 -35.99603 -35.46383 -34.60481 -32.57094 -30.18542 -29.54340 -26.62945 -24.52409 -22.17123 -21.09978 -19.67572 -17.53761 -16.83730 -16.72322 -16.59154 -16.27280 -15.46475 -14.77165 -14.50754 -14.05608 -13.84481 -13.44692 -13.01644 -12.51494 -12.33610 -12.03628 -11.91656 -11.39933 -11.09140 -10.92616 -10.81657 -10.32085 -10.02797 -9.84152 -9.66581 -9.49194 -9.25191 -8.84958 -8.55430 -7.92041 -6.04837 -4.21429 3.29274 3.35934 3.36733 4.20507 4.34443 4.42044 4.76391 4.94373 5.08562 5.24278 5.43299 5.60919 5.68216 5.72235 5.81392 5.90994 6.06162 6.35560 6.45830 6.49559 6.52929 7.29678 7.77957 7.81003 8.02972 8.09946 8.18683 8.31723 8.69630 9.01000 9.49395 11.01560 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.011716 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.406257 B = 2389.376182 C = 3339.536719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.082 3.918 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.194 3.806 10 H 0.020 0.980 11 O -0.327 6.327 12 C 0.090 3.910 13 H 0.063 0.937 14 C 0.095 3.905 15 O -0.553 6.553 16 C 0.095 3.905 17 H 0.060 0.940 18 O -0.545 6.545 19 C 0.080 3.920 20 H 0.062 0.938 21 O -0.573 6.573 22 C 0.055 3.945 23 H 0.063 0.937 24 O -0.578 6.578 25 H 0.263 0.737 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.367 0.633 29 H 0.374 0.626 30 H 0.385 0.615 31 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -9.018 -2.227 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.126 4.126 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.138 3.862 10 H 0.038 0.962 11 O -0.245 6.245 12 C 0.030 3.970 13 H 0.081 0.919 14 C 0.017 3.983 15 O -0.356 6.356 16 C 0.035 3.965 17 H 0.077 0.923 18 O -0.349 6.349 19 C 0.021 3.979 20 H 0.080 0.920 21 O -0.380 6.380 22 C -0.004 4.004 23 H 0.081 0.919 24 O -0.386 6.386 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.212 0.788 29 H 0.221 0.779 30 H 0.234 0.766 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.720 -8.811 -2.337 9.144 hybrid contribution 0.992 0.653 0.192 1.203 sum 0.272 -8.158 -2.146 8.440 Atomic orbital electron populations 1.70051 1.05962 1.26802 1.45076 1.25057 0.94804 0.99323 0.93419 0.86579 0.79813 0.83167 0.78302 1.20404 1.21050 1.19717 1.20768 0.92280 0.89519 1.54837 0.91886 1.20368 0.87656 0.92473 0.85669 0.96220 1.88530 1.56721 1.34066 1.45165 1.21861 0.91262 0.86567 0.97289 0.91908 1.21928 0.89898 0.88534 0.97897 1.86710 1.50326 1.53921 1.44669 1.22525 0.91280 0.98986 0.83723 0.92255 1.86567 1.55102 1.50956 1.42295 1.22631 0.91059 0.85858 0.98397 0.92030 1.86224 1.51107 1.50481 1.50191 1.23143 0.94502 0.95617 0.87157 0.91933 1.86112 1.63824 1.45146 1.43532 0.92697 0.92429 0.94033 0.78817 0.77907 0.76650 0.76374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.22 12.84 55.43 0.71 -24.51 16 2 C 0.08 2.32 5.40 -17.82 -0.10 2.23 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.86 8.20 -34.44 -0.28 -15.14 16 8 H 0.06 1.65 7.09 -52.49 -0.37 1.27 16 9 C 0.19 5.07 2.23 -27.84 -0.06 5.00 16 10 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 11 O -0.33 -8.70 9.33 -51.63 -0.48 -9.18 16 12 C 0.09 1.92 2.71 -26.68 -0.07 1.85 16 13 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 14 C 0.10 1.77 6.47 37.16 0.24 2.01 16 15 O -0.55 -10.89 13.63 -40.04 -0.55 -11.44 16 16 C 0.09 1.73 3.03 -26.59 -0.08 1.65 16 17 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 18 O -0.54 -9.93 12.06 -55.77 -0.67 -10.60 16 19 C 0.08 1.49 3.04 -26.55 -0.08 1.41 16 20 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 21 O -0.57 -9.33 12.73 -55.09 -0.70 -10.03 16 22 C 0.06 1.20 2.61 -26.59 -0.07 1.13 16 23 H 0.06 1.45 7.83 -51.93 -0.41 1.04 16 24 O -0.58 -11.60 12.92 -41.41 -0.54 -12.13 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.06 1.10 7.79 -51.93 -0.40 0.69 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.37 4.94 9.12 45.56 0.42 5.36 16 29 H 0.37 5.49 8.53 45.56 0.39 5.88 16 30 H 0.39 5.31 8.72 45.56 0.40 5.71 16 31 H 0.39 7.19 7.81 45.56 0.36 7.54 16 LS Contribution 263.97 15.07 3.98 3.98 Total: -1.00 -34.17 263.97 -4.65 -38.82 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.87 Total: 18.76 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.50 Total: 0.13 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.71 Total: -24.51 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -2.94 Total: -53.38 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.17 -4.65 -38.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.587 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds