Wall clock time and date at job start Mon Mar 30 2020 07:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48496 * 109.46987 * 269.99919 * 3 2 1 5 5 H 1.48501 * 109.46979 * 29.99239 * 3 2 1 6 6 H 1.48499 * 109.47026 * 149.99576 * 3 2 1 7 7 C 1.37884 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99579 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.48628 * 299.97146 * 9 7 2 11 11 O 1.42904 * 109.48198 * 60.00174 * 9 7 2 12 12 C 1.42907 * 114.09490 * 181.13819 * 11 9 7 13 13 H 1.09002 * 109.48112 * 58.82267 * 12 11 9 14 14 C 1.53006 * 109.47678 * 178.84601 * 12 11 9 15 15 O 1.42900 * 109.46941 * 294.97567 * 14 12 11 16 16 C 1.53092 * 109.41748 * 298.83754 * 12 11 9 17 17 H 1.08995 * 109.52379 * 177.51542 * 16 12 11 18 18 O 1.42903 * 109.52287 * 297.70854 * 16 12 11 19 19 C 1.53178 * 109.16048 * 57.60987 * 16 12 11 20 20 H 1.09005 * 109.61850 * 62.93333 * 19 16 12 21 21 O 1.42900 * 109.54294 * 183.15574 * 19 16 12 22 22 C 1.53097 * 109.47834 * 179.97438 * 9 7 2 23 23 H 1.09002 * 109.52227 * 302.31913 * 22 9 7 24 24 O 1.42902 * 109.52039 * 62.50280 * 22 9 7 25 25 H 0.96996 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47061 * 54.97674 * 14 12 11 27 27 H 1.08997 * 109.46811 * 174.97575 * 14 12 11 28 28 H 0.96695 * 113.99700 * 180.02562 * 15 14 12 29 29 H 0.96693 * 113.99977 * 179.97438 * 18 16 12 30 30 H 0.96696 * 114.00123 * 179.56221 * 21 19 16 31 31 H 0.96703 * 113.99936 * 300.00059 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6243 -2.5571 0.8905 11 8 0.4299 -2.5753 -1.1665 12 6 -0.3515 -3.7687 -1.2532 13 1 -0.9992 -3.8434 -0.3797 14 6 -1.2072 -3.7272 -2.5209 15 8 -2.1547 -2.6621 -2.4214 16 6 0.5788 -4.9835 -1.3044 17 1 -0.0157 -5.8968 -1.3261 18 8 1.3917 -4.9133 -2.4776 19 6 1.4735 -4.9844 -0.0611 20 1 0.8581 -5.0885 0.8325 21 8 2.3953 -6.0737 -0.1363 22 6 2.2457 -3.6629 0.0005 23 1 2.8999 -3.5830 -0.8677 24 8 3.0287 -3.6219 1.1953 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5660 -3.5634 -3.3869 27 1 -1.7354 -4.6740 -2.6338 28 1 -2.7326 -2.5766 -3.1919 29 1 2.0070 -5.6529 -2.5746 30 1 2.9987 -6.1311 0.6171 31 1 3.5414 -2.8089 1.3018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040646404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:21 Heat of formation + Delta-G solvation = -274.829894 kcal Electronic energy + Delta-G solvation = -18153.312480 eV Core-core repulsion = 15012.673374 eV Total energy + Delta-G solvation = -3140.639106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04512 -38.16938 -37.59889 -36.99163 -36.14567 -34.62863 -31.81521 -31.24736 -28.48432 -26.23099 -23.92740 -22.77023 -21.29710 -19.25699 -18.37757 -18.35142 -18.18807 -17.86755 -17.18460 -16.54099 -16.29772 -15.64834 -15.36492 -15.01429 -14.75325 -14.16343 -13.87669 -13.73923 -13.51115 -13.20849 -12.81983 -12.76525 -12.49588 -12.17140 -11.70216 -11.56920 -11.15363 -11.03930 -10.81494 -10.77678 -10.53714 -9.78971 -8.16769 -6.40668 1.40689 1.43058 1.52707 2.38004 2.78646 2.83007 3.15214 3.34689 3.54111 3.71754 3.75757 4.06532 4.17886 4.24778 4.32133 4.36835 4.45809 4.61372 4.85192 4.86253 4.95931 5.28405 5.65031 6.02747 6.50802 6.59612 6.77916 6.83902 7.00584 7.11750 7.35790 8.90330 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.011716 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.406257 B = 2389.376182 C = 3339.536719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.026 3.974 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.193 3.807 10 H -0.019 1.019 11 O -0.363 6.363 12 C 0.073 3.927 13 H 0.051 0.949 14 C 0.099 3.901 15 O -0.586 6.586 16 C 0.104 3.896 17 H 0.099 0.901 18 O -0.558 6.558 19 C 0.087 3.913 20 H 0.062 0.938 21 O -0.562 6.562 22 C 0.067 3.933 23 H 0.050 0.950 24 O -0.572 6.572 25 H 0.262 0.738 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.391 0.609 29 H 0.391 0.609 30 H 0.398 0.602 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -10.119 -2.693 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.091 0.909 9 C 0.137 3.863 10 H -0.002 1.002 11 O -0.282 6.282 12 C 0.014 3.986 13 H 0.069 0.931 14 C 0.022 3.978 15 O -0.394 6.394 16 C 0.044 3.956 17 H 0.117 0.883 18 O -0.365 6.365 19 C 0.027 3.973 20 H 0.080 0.920 21 O -0.370 6.370 22 C 0.007 3.993 23 H 0.068 0.932 24 O -0.381 6.381 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.240 0.760 29 H 0.240 0.760 30 H 0.248 0.752 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.083 -9.942 -2.807 10.331 hybrid contribution 0.733 0.924 0.331 1.225 sum 0.816 -9.018 -2.476 9.387 Atomic orbital electron populations 1.70210 1.07782 1.27533 1.46862 1.25981 0.95615 1.03243 0.92970 0.85465 0.79011 0.78352 0.78206 1.20471 1.20733 1.17866 1.21252 0.93047 0.90730 1.54272 0.90931 1.20222 0.87881 0.93928 0.84269 1.00184 1.88404 1.57710 1.37330 1.44716 1.22240 0.91773 0.86212 0.98419 0.93130 1.21989 0.89752 0.90258 0.95849 1.86647 1.51105 1.54863 1.46745 1.22366 0.91082 0.98745 0.83415 0.88343 1.86533 1.55666 1.52294 1.42001 1.22462 0.91076 0.84814 0.98905 0.92041 1.86212 1.50973 1.48842 1.51019 1.22909 0.93378 0.95924 0.87049 0.93234 1.86114 1.63585 1.45456 1.42939 0.92921 0.93254 0.89358 0.75984 0.75993 0.75183 0.75771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.62 12.84 21.45 0.28 -54.35 16 2 C 0.03 1.48 5.40 84.66 0.46 1.94 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.56 -31.24 8.20 25.60 0.21 -31.03 16 8 H 0.07 3.79 7.09 -2.91 -0.02 3.77 16 9 C 0.19 10.31 2.23 29.88 0.07 10.37 16 10 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 11 O -0.36 -19.72 9.33 -133.30 -1.24 -20.96 16 12 C 0.07 3.07 2.71 30.63 0.08 3.16 16 13 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 14 C 0.10 3.53 6.47 71.98 0.47 3.99 16 15 O -0.59 -22.86 13.63 -144.38 -1.97 -24.82 16 16 C 0.10 3.55 3.03 30.68 0.09 3.64 16 17 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 18 O -0.56 -19.04 12.06 -129.35 -1.56 -20.60 16 19 C 0.09 3.11 3.04 30.71 0.09 3.21 16 20 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 21 O -0.56 -16.57 12.73 -129.99 -1.66 -18.23 16 22 C 0.07 2.89 2.61 30.69 0.08 2.97 16 23 H 0.05 2.27 7.83 -2.39 -0.02 2.25 16 24 O -0.57 -22.49 12.92 -143.07 -1.85 -24.34 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.05 1.82 7.79 -2.39 -0.02 1.80 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.39 10.17 9.12 -74.06 -0.68 9.49 16 29 H 0.39 10.29 8.53 -74.06 -0.63 9.66 16 30 H 0.40 9.74 8.72 -74.06 -0.65 9.10 16 31 H 0.39 14.34 7.81 -74.05 -0.58 13.76 16 Total: -1.00 -74.68 263.97 -5.76 -80.44 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: -1.34 Total: 38.59 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 1.55 Total: -1.75 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.28 Total: -54.35 kcal Atomic # 8 Polarization: -100.68 SS G_CDS: -8.28 Total: -108.96 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -74.68 -5.76 -80.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.386 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds