Wall clock time and date at job start Mon Mar 30 2020 07:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48504 * 109.46996 * 270.00379 * 3 2 1 5 5 H 1.48496 * 109.47297 * 30.00300 * 3 2 1 6 6 H 1.48495 * 109.47008 * 150.00465 * 3 2 1 7 7 C 1.37879 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99885 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.48173 * 60.02522 * 9 7 2 11 11 O 1.42908 * 109.48306 * 300.00283 * 9 7 2 12 12 C 1.42908 * 114.09304 * 301.17262 * 11 9 7 13 13 H 1.09000 * 109.48126 * 58.83622 * 12 11 9 14 14 C 1.52999 * 109.48002 * 178.85969 * 12 11 9 15 15 O 1.42903 * 109.47256 * 294.98223 * 14 12 11 16 16 C 1.53092 * 109.42593 * 298.84740 * 12 11 9 17 17 H 1.09001 * 109.52054 * 177.50953 * 16 12 11 18 18 O 1.42897 * 109.52181 * 297.69573 * 16 12 11 19 19 C 1.53176 * 109.16027 * 57.59333 * 16 12 11 20 20 H 1.08997 * 109.60739 * 62.95075 * 19 16 12 21 21 O 1.42902 * 109.54061 * 183.16247 * 19 16 12 22 22 C 1.53089 * 109.48179 * 180.02562 * 9 7 2 23 23 H 1.09004 * 109.52724 * 182.34549 * 22 9 7 24 24 O 1.42897 * 109.52109 * 302.46964 * 22 9 7 25 25 H 0.97006 * 119.99700 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47286 * 174.97783 * 14 12 11 27 27 H 1.09008 * 109.47201 * 54.97564 * 14 12 11 28 28 H 0.96700 * 114.00311 * 180.02562 * 15 14 12 29 29 H 0.96699 * 113.99678 * 179.97438 * 18 16 12 30 30 H 0.96703 * 114.00212 * 179.57000 * 21 19 16 31 31 H 0.96698 * 114.00556 * 299.99693 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 1 3.8753 -0.6809 0.8890 11 8 3.9876 -0.5202 -1.1679 12 6 3.5451 -1.0989 -2.3973 13 1 2.4555 -1.0975 -2.4283 14 6 4.0901 -0.2825 -3.5709 15 8 3.5212 1.0282 -3.5442 16 6 4.0567 -2.5385 -2.4957 17 1 3.6834 -2.9959 -3.4119 18 8 5.4856 -2.5375 -2.5089 19 6 3.5566 -3.3336 -1.2857 20 1 2.4677 -3.3781 -1.3020 21 8 4.0899 -4.6586 -1.3309 22 6 4.0219 -2.6374 -0.0023 23 1 5.1112 -2.6386 0.0393 24 8 3.5000 -3.3294 1.1337 25 1 -0.4850 0.8401 0.0004 26 1 3.8277 -0.7734 -4.5080 27 1 5.1747 -0.2094 -3.4901 28 1 3.8224 1.6024 -4.2616 29 1 5.8789 -3.4189 -2.5694 30 1 3.8189 -5.2172 -0.5895 31 1 3.7515 -2.9391 1.9819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040646405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:23 Heat of formation + Delta-G solvation = -235.557666 kcal Electronic energy + Delta-G solvation = -18517.387321 eV Core-core repulsion = 15378.451186 eV Total energy + Delta-G solvation = -3138.936135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62355 -36.73071 -36.12479 -35.58824 -34.72729 -32.39085 -30.37881 -29.78802 -26.65270 -24.67127 -22.25135 -21.39326 -19.36426 -17.55156 -17.09927 -16.85194 -16.60571 -16.26165 -15.31889 -14.93157 -14.55292 -13.97690 -13.64883 -13.48122 -13.35184 -12.72313 -12.38025 -12.35957 -11.96845 -11.63864 -11.11502 -10.77687 -10.49415 -10.32616 -10.16281 -9.69891 -9.63859 -9.51030 -9.31807 -8.79324 -8.58692 -8.16188 -6.12423 -4.24666 3.50448 3.58308 3.73669 4.23620 4.34387 4.56210 4.71221 4.88280 5.07598 5.22578 5.36367 5.65814 5.68876 5.76784 5.81324 5.87878 5.96115 6.13653 6.32249 6.47487 6.71553 7.08195 7.50159 7.86558 8.01114 8.04184 8.10720 8.25683 8.56747 8.89929 9.49938 10.96461 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.014928 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.969505 B = 1875.257038 C = 2656.860028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.088 3.912 3 Si 0.894 3.106 4 H -0.249 1.249 5 H -0.308 1.308 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.145 3.855 10 H 0.067 0.933 11 O -0.373 6.373 12 C 0.109 3.891 13 H 0.096 0.904 14 C 0.088 3.912 15 O -0.556 6.556 16 C 0.098 3.902 17 H 0.063 0.937 18 O -0.553 6.553 19 C 0.089 3.911 20 H 0.083 0.917 21 O -0.578 6.578 22 C 0.069 3.931 23 H 0.050 0.950 24 O -0.561 6.561 25 H 0.265 0.735 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.367 0.633 29 H 0.374 0.626 30 H 0.385 0.615 31 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.642 -3.942 -5.140 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.118 4.118 3 Si 0.722 3.278 4 H -0.173 1.173 5 H -0.237 1.237 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.098 0.902 9 C 0.089 3.911 10 H 0.085 0.915 11 O -0.292 6.292 12 C 0.050 3.950 13 H 0.113 0.887 14 C 0.011 3.989 15 O -0.360 6.360 16 C 0.039 3.961 17 H 0.081 0.919 18 O -0.358 6.358 19 C 0.030 3.970 20 H 0.101 0.899 21 O -0.385 6.385 22 C 0.009 3.991 23 H 0.068 0.932 24 O -0.366 6.366 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.212 0.788 29 H 0.221 0.779 30 H 0.233 0.767 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.228 -3.434 -5.580 10.518 hybrid contribution 0.449 0.338 0.544 0.783 sum 8.677 -3.096 -5.036 10.499 Atomic orbital electron populations 1.69955 1.06657 1.27519 1.48307 1.25000 0.94665 0.99884 0.92207 0.86524 0.78831 0.81992 0.80422 1.17336 1.23682 1.19762 1.21280 0.88800 0.94989 1.53739 0.90196 1.20952 0.95873 0.88406 0.85888 0.91495 1.87906 1.73514 1.54900 1.12917 1.21759 0.99921 0.87515 0.85786 0.88690 1.22056 0.97424 0.83662 0.95805 1.86752 1.71149 1.24133 1.53927 1.22458 0.81589 0.96631 0.95458 0.91875 1.86512 1.18795 1.33560 1.96971 1.22509 0.98971 0.81543 0.94006 0.89922 1.86202 1.76340 1.24082 1.51885 1.22820 0.95765 0.94264 0.86206 0.93172 1.86314 1.78336 1.55770 1.16225 0.92512 0.93383 0.92662 0.78767 0.77875 0.76705 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 3 Si 0.89 23.32 26.18 -169.99 -4.45 18.87 16 4 H -0.25 -6.58 6.54 56.52 0.37 -6.22 16 5 H -0.31 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.27 -7.04 6.54 56.52 0.37 -6.67 16 7 C -0.55 -15.04 6.81 -34.44 -0.23 -15.28 16 8 H 0.08 2.38 7.00 -52.49 -0.37 2.01 16 9 C 0.14 3.45 2.37 -27.84 -0.07 3.38 16 10 H 0.07 1.62 7.20 -51.93 -0.37 1.25 16 11 O -0.37 -8.92 7.83 -51.62 -0.40 -9.33 16 12 C 0.11 2.29 2.44 -26.68 -0.06 2.23 16 13 H 0.10 2.27 7.09 -51.93 -0.37 1.90 16 14 C 0.09 1.57 6.47 37.16 0.24 1.82 16 15 O -0.56 -10.56 13.06 -40.04 -0.52 -11.08 16 16 C 0.10 1.79 3.03 -26.59 -0.08 1.71 16 17 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 18 O -0.55 -9.42 12.06 -55.76 -0.67 -10.10 16 19 C 0.09 1.70 2.79 -26.51 -0.07 1.63 16 20 H 0.08 1.78 6.85 -51.93 -0.36 1.42 16 21 O -0.58 -9.57 12.73 -55.07 -0.70 -10.27 16 22 C 0.07 1.40 2.84 -26.56 -0.08 1.32 16 23 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 24 O -0.56 -10.72 12.42 -41.35 -0.51 -11.24 16 25 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.96 7.79 -51.92 -0.40 0.56 16 28 H 0.37 4.69 9.12 45.56 0.42 5.11 16 29 H 0.37 5.16 8.53 45.56 0.39 5.55 16 30 H 0.38 5.49 8.72 45.56 0.40 5.89 16 31 H 0.38 5.90 9.08 45.56 0.41 6.31 16 LS Contribution 254.46 15.07 3.83 3.83 Total: -1.00 -34.15 254.46 -3.81 -37.96 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.71 Total: 18.23 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.45 Total: -0.76 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.12 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -2.81 Total: -52.01 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.45 Total: 18.87 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.15 -3.81 -37.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.593 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds