Wall clock time and date at job start Mon Mar 30 2020 07:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48504 * 109.46996 * 270.00379 * 3 2 1 5 5 H 1.48496 * 109.47297 * 30.00300 * 3 2 1 6 6 H 1.48495 * 109.47008 * 150.00465 * 3 2 1 7 7 C 1.37879 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99885 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.48173 * 60.02522 * 9 7 2 11 11 O 1.42908 * 109.48306 * 300.00283 * 9 7 2 12 12 C 1.42908 * 114.09304 * 301.17262 * 11 9 7 13 13 H 1.09000 * 109.48126 * 58.83622 * 12 11 9 14 14 C 1.52999 * 109.48002 * 178.85969 * 12 11 9 15 15 O 1.42903 * 109.47256 * 294.98223 * 14 12 11 16 16 C 1.53092 * 109.42593 * 298.84740 * 12 11 9 17 17 H 1.09001 * 109.52054 * 177.50953 * 16 12 11 18 18 O 1.42897 * 109.52181 * 297.69573 * 16 12 11 19 19 C 1.53176 * 109.16027 * 57.59333 * 16 12 11 20 20 H 1.08997 * 109.60739 * 62.95075 * 19 16 12 21 21 O 1.42902 * 109.54061 * 183.16247 * 19 16 12 22 22 C 1.53089 * 109.48179 * 180.02562 * 9 7 2 23 23 H 1.09004 * 109.52724 * 182.34549 * 22 9 7 24 24 O 1.42897 * 109.52109 * 302.46964 * 22 9 7 25 25 H 0.97006 * 119.99700 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47286 * 174.97783 * 14 12 11 27 27 H 1.09008 * 109.47201 * 54.97564 * 14 12 11 28 28 H 0.96700 * 114.00311 * 180.02562 * 15 14 12 29 29 H 0.96699 * 113.99678 * 179.97438 * 18 16 12 30 30 H 0.96703 * 114.00212 * 179.57000 * 21 19 16 31 31 H 0.96698 * 114.00556 * 299.99693 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 1 3.8753 -0.6809 0.8890 11 8 3.9876 -0.5202 -1.1679 12 6 3.5451 -1.0989 -2.3973 13 1 2.4555 -1.0975 -2.4283 14 6 4.0901 -0.2825 -3.5709 15 8 3.5212 1.0282 -3.5442 16 6 4.0567 -2.5385 -2.4957 17 1 3.6834 -2.9959 -3.4119 18 8 5.4856 -2.5375 -2.5089 19 6 3.5566 -3.3336 -1.2857 20 1 2.4677 -3.3781 -1.3020 21 8 4.0899 -4.6586 -1.3309 22 6 4.0219 -2.6374 -0.0023 23 1 5.1112 -2.6386 0.0393 24 8 3.5000 -3.3294 1.1337 25 1 -0.4850 0.8401 0.0004 26 1 3.8277 -0.7734 -4.5080 27 1 5.1747 -0.2094 -3.4901 28 1 3.8224 1.6024 -4.2616 29 1 5.8789 -3.4189 -2.5694 30 1 3.8189 -5.2172 -0.5895 31 1 3.7515 -2.9391 1.9819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040646405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:23 Heat of formation + Delta-G solvation = -270.589532 kcal Electronic energy + Delta-G solvation = -18518.906416 eV Core-core repulsion = 15378.451186 eV Total energy + Delta-G solvation = -3140.455231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22664 -38.20331 -37.66119 -37.05809 -36.17446 -34.54628 -31.93932 -31.46430 -28.47328 -26.34394 -23.96751 -22.95917 -21.07032 -19.31241 -18.66539 -18.34150 -18.06503 -17.83244 -17.02969 -16.67548 -16.33095 -15.49750 -15.24137 -15.14891 -14.97601 -14.46390 -14.23092 -13.85565 -13.47503 -13.29964 -12.79584 -12.72886 -12.38740 -12.03529 -11.86208 -11.52407 -11.15150 -11.01890 -10.87598 -10.74143 -10.52368 -9.96999 -8.35305 -6.47553 1.38930 1.50645 1.61780 2.40804 2.72352 2.86738 3.09593 3.35971 3.40199 3.71676 3.75742 4.16749 4.20534 4.22778 4.30888 4.42883 4.45827 4.61486 4.73115 4.93468 5.10356 5.25347 5.45822 6.03139 6.51505 6.62487 6.69063 6.82417 6.89373 7.00304 7.28886 8.77471 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.014928 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.969505 B = 1875.257038 C = 2656.860028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.040 3.960 3 Si 0.948 3.052 4 H -0.253 1.253 5 H -0.309 1.309 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.144 3.856 10 H 0.063 0.937 11 O -0.385 6.385 12 C 0.097 3.903 13 H 0.058 0.942 14 C 0.093 3.907 15 O -0.588 6.588 16 C 0.108 3.892 17 H 0.089 0.911 18 O -0.554 6.554 19 C 0.093 3.907 20 H 0.051 0.949 21 O -0.566 6.566 22 C 0.078 3.922 23 H 0.064 0.936 24 O -0.567 6.567 25 H 0.266 0.734 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.393 0.607 29 H 0.392 0.608 30 H 0.396 0.604 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.694 -4.335 -5.999 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.160 4.160 3 Si 0.775 3.225 4 H -0.178 1.178 5 H -0.238 1.238 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.065 0.935 9 C 0.087 3.913 10 H 0.081 0.919 11 O -0.305 6.305 12 C 0.039 3.961 13 H 0.075 0.925 14 C 0.015 3.985 15 O -0.396 6.396 16 C 0.048 3.952 17 H 0.107 0.893 18 O -0.362 6.362 19 C 0.034 3.966 20 H 0.069 0.931 21 O -0.374 6.374 22 C 0.018 3.982 23 H 0.082 0.918 24 O -0.375 6.375 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.242 0.758 29 H 0.241 0.759 30 H 0.246 0.754 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 10.311 -3.844 -6.438 12.749 hybrid contribution -0.170 0.366 0.793 0.890 sum 10.141 -3.478 -5.645 12.116 Atomic orbital electron populations 1.70054 1.08014 1.28113 1.50931 1.25651 0.95124 1.02689 0.92557 0.85677 0.77863 0.78956 0.79979 1.17764 1.23776 1.19123 1.21387 0.90841 0.93241 1.51727 0.93528 1.20899 0.93358 0.90929 0.86127 0.91928 1.87834 1.73250 1.55723 1.13735 1.21968 0.98198 0.90132 0.85809 0.92462 1.22094 0.97497 0.83250 0.95635 1.86672 1.71908 1.25152 1.55869 1.22204 0.82460 0.94559 0.95937 0.89331 1.86472 1.17639 1.35154 1.96927 1.22313 0.97239 0.82892 0.94170 0.93093 1.86189 1.75833 1.22866 1.52533 1.22684 0.96220 0.92142 0.87137 0.91810 1.86299 1.78538 1.55712 1.16929 0.92510 0.89825 0.91810 0.75808 0.75890 0.75420 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.96 21.45 0.30 -57.65 16 2 C 0.04 2.37 5.47 84.66 0.46 2.83 16 3 Si 0.95 48.60 26.18 68.60 1.80 50.40 16 4 H -0.25 -13.08 6.54 99.48 0.65 -12.43 16 5 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 6 H -0.27 -13.25 6.54 99.48 0.65 -12.60 16 7 C -0.53 -29.65 6.81 25.60 0.17 -29.47 16 8 H 0.05 2.86 7.00 -2.91 -0.02 2.84 16 9 C 0.14 6.73 2.37 29.88 0.07 6.80 16 10 H 0.06 2.97 7.20 -2.39 -0.02 2.95 16 11 O -0.39 -17.95 7.83 -133.31 -1.04 -19.00 16 12 C 0.10 3.96 2.44 30.62 0.07 4.04 16 13 H 0.06 2.76 7.09 -2.39 -0.02 2.75 16 14 C 0.09 3.05 6.47 71.98 0.47 3.52 16 15 O -0.59 -21.17 13.06 -144.38 -1.89 -23.05 16 16 C 0.11 3.67 3.03 30.68 0.09 3.77 16 17 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 18 O -0.55 -16.82 12.06 -129.35 -1.56 -18.38 16 19 C 0.09 3.44 2.79 30.73 0.09 3.53 16 20 H 0.05 2.21 6.85 -2.39 -0.02 2.20 16 21 O -0.57 -17.19 12.73 -130.01 -1.66 -18.84 16 22 C 0.08 3.03 2.84 30.71 0.09 3.12 16 23 H 0.06 2.36 7.84 -2.38 -0.02 2.34 16 24 O -0.57 -20.93 12.42 -143.13 -1.78 -22.71 16 25 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 2.00 7.79 -2.38 -0.02 1.98 16 28 H 0.39 9.07 9.12 -74.06 -0.68 8.39 16 29 H 0.39 9.12 8.53 -74.06 -0.63 8.49 16 30 H 0.40 10.30 8.72 -74.06 -0.65 9.65 16 31 H 0.39 11.65 9.08 -74.06 -0.67 10.98 16 Total: -1.00 -73.15 254.46 -5.85 -79.00 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -1.54 Total: 32.12 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 1.51 Total: -1.87 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.30 Total: -57.65 kcal Atomic # 8 Polarization: -94.07 SS G_CDS: -7.92 Total: -101.99 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.80 Total: 50.40 kcal Total: -73.15 -5.85 -79.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040646405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.595 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds