Wall clock time and date at job start Mon Mar 30 2020 07:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99971 * 2 1 4 4 H 1.48507 * 109.47052 * 269.99888 * 3 2 1 5 5 H 1.48500 * 109.47422 * 30.00032 * 3 2 1 6 6 H 1.48499 * 109.47107 * 150.00175 * 3 2 1 7 7 C 1.37878 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00437 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00038 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.48031 * 59.99597 * 9 7 2 11 11 O 1.42904 * 109.49195 * 299.97206 * 9 7 2 12 12 C 1.42903 * 114.09674 * 301.17172 * 11 9 7 13 13 H 1.08995 * 109.49027 * 58.82380 * 12 11 9 14 14 C 1.52996 * 109.48197 * 178.85905 * 12 11 9 15 15 O 1.42906 * 109.46971 * 294.93956 * 14 12 11 16 16 C 1.53093 * 109.41188 * 298.83886 * 12 11 9 17 17 H 1.08996 * 109.52603 * 177.51544 * 16 12 11 18 18 O 1.42904 * 109.52108 * 297.70698 * 16 12 11 19 19 C 1.53177 * 109.16320 * 57.60672 * 16 12 11 20 20 H 1.08995 * 109.61355 * 62.93304 * 19 16 12 21 21 O 1.42902 * 109.54235 * 183.15135 * 19 16 12 22 22 C 1.53087 * 109.48490 * 180.02562 * 9 7 2 23 23 H 1.09004 * 109.52230 * 302.42138 * 22 9 7 24 24 O 1.42897 * 109.52561 * 182.29262 * 22 9 7 25 25 H 0.96998 * 119.99997 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00311 * 300.02731 * 10 9 7 27 27 H 1.09011 * 109.47328 * 54.93545 * 14 12 11 28 28 H 1.08996 * 109.47697 * 174.93663 * 14 12 11 29 29 H 0.96703 * 113.99573 * 179.97438 * 15 14 12 30 30 H 0.96698 * 113.99918 * 299.68053 * 18 16 12 31 31 H 0.96698 * 113.99936 * 299.55809 * 21 19 16 32 32 H 0.96706 * 114.00078 * 180.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 0.4289 -2.5758 -1.1646 11 8 0.4303 -2.5748 1.1691 12 6 1.1536 -2.4812 2.3979 13 1 1.6973 -1.5370 2.4288 14 6 0.1749 -2.5451 3.5722 15 8 -0.6751 -1.3966 3.5469 16 6 2.1443 -3.6442 2.4952 17 1 2.7278 -3.5501 3.4109 18 8 1.4288 -4.8812 2.5083 19 6 3.0822 -3.6084 1.2846 20 1 3.6652 -2.6876 1.3006 21 8 3.9630 -4.7328 1.3289 22 6 2.2456 -3.6630 0.0027 23 1 2.9010 -3.5828 -0.8646 24 8 1.5328 -4.9004 -0.0500 25 1 -0.4850 0.8400 0.0004 26 1 -0.2264 -1.8678 -1.2312 27 1 -0.4312 -3.4476 3.4914 28 1 0.7319 -2.5643 4.5089 29 1 -1.3229 -1.3709 4.2644 30 1 0.8148 -4.9725 3.2498 31 1 4.5241 -4.7621 2.1159 32 1 2.1019 -5.6823 -0.0520 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040670831.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:37 Heat of formation + Delta-G solvation = -278.088175 kcal Electronic energy + Delta-G solvation = -20994.878831 eV Core-core repulsion = 17535.416243 eV Total energy + Delta-G solvation = -3459.462588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53793 -36.61727 -36.28203 -35.38061 -34.56634 -33.65993 -32.12316 -29.98766 -29.28401 -26.28691 -24.69653 -22.21145 -21.03474 -19.26299 -17.49842 -17.08849 -17.04125 -16.40852 -16.16485 -15.69132 -15.08537 -14.87269 -14.19078 -13.92034 -13.65405 -13.19621 -12.92092 -12.80202 -12.47309 -11.70805 -11.53447 -11.48050 -11.09007 -10.98078 -10.73477 -10.40268 -10.24337 -9.97330 -9.82986 -9.62358 -9.48103 -8.83284 -8.74906 -8.56421 -7.83172 -6.19561 -4.41662 3.19702 3.26859 3.28054 4.23431 4.23601 4.60137 4.75812 4.86602 5.11609 5.21416 5.28968 5.49301 5.60289 5.70641 5.79386 6.00364 6.01336 6.12503 6.30849 6.62551 6.76546 7.23020 7.61992 7.81583 7.87664 8.07007 8.13854 8.51567 8.71171 8.91853 9.33569 9.47478 10.82846 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.011879 C = 0.009949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.281710 B = 2356.503226 C = 2813.792560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.090 3.910 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.593 4.593 8 H 0.063 0.937 9 C 0.421 3.579 10 O -0.557 6.557 11 O -0.363 6.363 12 C 0.088 3.912 13 H 0.077 0.923 14 C 0.085 3.915 15 O -0.544 6.544 16 C 0.054 3.946 17 H 0.048 0.952 18 O -0.530 6.530 19 C 0.086 3.914 20 H 0.084 0.916 21 O -0.562 6.562 22 C 0.117 3.883 23 H 0.054 0.946 24 O -0.530 6.530 25 H 0.269 0.731 26 H 0.387 0.613 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.364 0.636 30 H 0.360 0.640 31 H 0.371 0.629 32 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -4.178 8.699 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.118 4.118 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.631 4.631 8 H 0.081 0.919 9 C 0.344 3.656 10 O -0.366 6.366 11 O -0.283 6.283 12 C 0.028 3.972 13 H 0.094 0.906 14 C 0.006 3.994 15 O -0.346 6.346 16 C -0.006 4.006 17 H 0.065 0.935 18 O -0.333 6.333 19 C 0.027 3.973 20 H 0.102 0.898 21 O -0.367 6.367 22 C 0.057 3.943 23 H 0.072 0.928 24 O -0.332 6.332 25 H 0.080 0.920 26 H 0.239 0.761 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.209 0.791 30 H 0.205 0.795 31 H 0.217 0.783 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.518 -4.298 6.879 8.841 hybrid contribution 0.616 1.289 1.805 2.301 sum 4.133 -3.009 8.684 10.077 Atomic orbital electron populations 1.69737 1.05836 1.27551 1.45597 1.24992 0.94865 0.99292 0.92700 0.86524 0.79781 0.82828 0.78422 1.20210 1.20829 1.19768 1.21821 0.93594 0.91024 1.56663 0.91894 1.19255 0.82196 0.87796 0.76403 1.86253 1.53615 1.56185 1.40556 1.87826 1.35110 1.92986 1.12410 1.22065 0.91925 0.97081 0.86086 0.90562 1.22105 0.92549 0.88874 0.95829 1.86811 1.50424 1.43681 1.53717 1.23108 0.93878 0.86108 0.97519 0.93473 1.86728 1.58712 1.35944 1.51919 1.22715 0.89711 0.88983 0.95868 0.89823 1.86431 1.54988 1.48209 1.47066 1.22227 0.93019 0.86202 0.92861 0.92830 1.86683 1.35681 1.14148 1.96714 0.92033 0.76140 0.93576 0.93919 0.79124 0.79496 0.78257 0.79681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.70 11.20 55.43 0.62 -23.08 16 2 C 0.09 2.40 5.32 -17.82 -0.09 2.31 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.59 -15.94 6.28 -34.44 -0.22 -16.15 16 8 H 0.06 1.63 6.87 -52.49 -0.36 1.27 16 9 C 0.42 11.27 0.86 -27.84 -0.02 11.24 16 10 O -0.56 -16.08 13.05 -63.97 -0.83 -16.92 16 11 O -0.36 -9.59 9.35 -67.32 -0.63 -10.22 16 12 C 0.09 1.89 2.44 -26.68 -0.06 1.82 16 13 H 0.08 1.79 7.09 -51.93 -0.37 1.43 16 14 C 0.08 1.46 6.21 37.16 0.23 1.69 16 15 O -0.54 -10.41 13.63 -40.00 -0.55 -10.95 16 16 C 0.05 0.98 3.03 -26.59 -0.08 0.90 16 17 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 18 O -0.53 -9.61 11.27 -65.34 -0.74 -10.35 16 19 C 0.09 1.69 2.95 -26.55 -0.08 1.61 16 20 H 0.08 1.63 6.85 -51.93 -0.36 1.28 16 21 O -0.56 -9.45 12.58 -57.81 -0.73 -10.17 16 22 C 0.12 2.78 2.72 -26.60 -0.07 2.71 16 23 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 24 O -0.53 -12.58 11.34 -67.87 -0.77 -13.35 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.39 11.19 7.18 45.56 0.33 11.52 16 27 H 0.05 0.75 7.03 -51.92 -0.36 0.38 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.36 4.67 9.12 45.56 0.42 5.09 16 30 H 0.36 5.11 7.44 45.56 0.34 5.45 16 31 H 0.37 4.38 9.09 45.56 0.41 4.80 16 32 H 0.36 7.27 8.53 45.56 0.39 7.66 16 LS Contribution 265.01 15.07 3.99 3.99 Total: -1.00 -35.04 265.01 -5.02 -40.06 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.03 Total: 29.35 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -0.40 Total: 6.13 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.62 Total: -23.08 kcal Atomic # 8 Polarization: -67.71 SS G_CDS: -4.24 Total: -71.96 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.04 -5.02 -40.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040670831.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.032 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds