Wall clock time and date at job start Mon Mar 30 2020 07:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99935 * 2 1 4 4 H 1.48494 * 109.46731 * 90.00479 * 3 2 1 5 5 H 1.48498 * 109.47083 * 210.00312 * 3 2 1 6 6 H 1.48497 * 109.47143 * 330.00254 * 3 2 1 7 7 C 1.37872 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99963 * 0.87963 * 7 2 1 9 9 C 1.50706 * 119.99854 * 180.89084 * 7 2 1 10 10 O 1.42890 * 109.48160 * 56.58335 * 9 7 2 11 11 O 1.42900 * 109.47609 * 296.54526 * 9 7 2 12 12 C 1.42909 * 114.10138 * 301.17514 * 11 9 7 13 13 H 1.09004 * 109.47591 * 58.82258 * 12 11 9 14 14 C 1.52994 * 109.49071 * 178.85687 * 12 11 9 15 15 O 1.42902 * 109.47200 * 294.94561 * 14 12 11 16 16 C 1.53090 * 109.41282 * 298.84839 * 12 11 9 17 17 H 1.09000 * 109.52023 * 177.51108 * 16 12 11 18 18 O 1.42900 * 109.52430 * 297.69497 * 16 12 11 19 19 C 1.53177 * 109.16751 * 57.60472 * 16 12 11 20 20 H 1.09000 * 109.54265 * 62.88710 * 19 16 12 21 21 O 1.42903 * 109.61915 * 183.10543 * 19 16 12 22 22 C 1.53090 * 109.47594 * 176.60491 * 9 7 2 23 23 H 1.09005 * 109.51905 * 182.27450 * 22 9 7 24 24 O 1.42897 * 109.52570 * 302.40186 * 22 9 7 25 25 H 0.96997 * 119.99831 * 174.94193 * 1 2 3 26 26 H 0.96702 * 113.99731 * 293.97674 * 10 9 7 27 27 H 1.08995 * 109.47242 * 54.95276 * 14 12 11 28 28 H 1.09007 * 109.47017 * 174.95481 * 14 12 11 29 29 H 0.96701 * 114.00118 * 179.97438 * 15 14 12 30 30 H 0.96698 * 113.99933 * 299.68921 * 18 16 12 31 31 H 0.96707 * 113.99836 * 299.60366 * 21 19 16 32 32 H 0.96705 * 114.00295 * 180.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 1.4000 5 1 3.5467 1.4403 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1292 -0.0153 9 6 3.5115 -1.1940 0.0198 10 8 3.9728 -0.4615 1.1565 11 8 4.0040 -0.5821 -1.1739 12 6 3.5781 -1.2242 -2.3775 13 1 2.4890 -1.2246 -2.4234 14 6 4.1396 -0.4703 -3.5846 15 8 3.5706 0.8397 -3.6348 16 6 4.0902 -2.6669 -2.3932 17 1 3.7294 -3.1717 -3.2894 18 8 5.5192 -2.6665 -2.3866 19 6 3.5727 -3.3978 -1.1505 20 1 2.4840 -3.4417 -1.1803 21 8 4.1039 -4.7240 -1.1180 22 6 4.0208 -2.6355 0.1002 23 1 5.1094 -2.6345 0.1557 24 8 3.4839 -3.2675 1.2640 25 1 -0.4850 -0.8368 -0.0741 26 1 3.7659 0.4827 1.1264 27 1 5.2229 -0.3927 -3.4928 28 1 3.8900 -1.0099 -4.4982 29 1 3.8825 1.3758 -4.3767 30 1 5.9159 -2.2193 -3.1466 31 1 3.8592 -5.2645 -1.8817 32 1 3.7660 -4.1853 1.3787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040670836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:39 Heat of formation + Delta-G solvation = -269.068845 kcal Electronic energy + Delta-G solvation = -20975.430023 eV Core-core repulsion = 17516.358543 eV Total energy + Delta-G solvation = -3459.071481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90101 -36.96846 -36.79618 -35.81331 -34.88501 -34.25867 -32.39230 -30.29079 -29.52804 -26.26487 -24.72787 -22.33393 -21.34753 -19.41359 -17.91865 -17.72370 -17.28574 -17.15659 -16.68160 -15.87204 -15.35581 -14.72465 -14.71276 -14.14509 -13.71136 -13.62921 -13.27235 -13.08765 -12.57589 -12.20175 -12.10014 -11.86074 -11.46650 -10.83290 -10.73265 -10.43696 -10.28608 -9.90903 -9.80445 -9.68653 -9.65808 -9.20673 -8.81014 -8.55896 -8.17067 -6.52347 -4.36226 3.37530 3.53866 3.74147 3.99201 4.25429 4.33515 4.46732 4.55622 4.90251 5.06403 5.19049 5.26363 5.34724 5.40270 5.47040 5.69631 5.77700 5.82634 6.02259 6.39772 6.45415 6.68750 7.45847 7.68008 7.79405 7.85686 8.09525 8.29922 8.43585 8.63131 8.76133 9.43903 10.80699 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.014066 C = 0.010242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.232102 B = 1990.166533 C = 2733.125419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.047 3.953 3 Si 1.025 2.975 4 H -0.288 1.288 5 H -0.233 1.233 6 H -0.289 1.289 7 C -0.627 4.627 8 H 0.069 0.931 9 C 0.378 3.622 10 O -0.541 6.541 11 O -0.391 6.391 12 C 0.079 3.921 13 H 0.091 0.909 14 C 0.083 3.917 15 O -0.551 6.551 16 C 0.052 3.948 17 H 0.060 0.940 18 O -0.546 6.546 19 C 0.089 3.911 20 H 0.089 0.911 21 O -0.561 6.561 22 C 0.131 3.869 23 H 0.057 0.943 24 O -0.536 6.536 25 H 0.269 0.731 26 H 0.356 0.644 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.371 0.629 30 H 0.368 0.632 31 H 0.373 0.627 32 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.445 -3.938 -9.986 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.161 4.161 3 Si 0.853 3.147 4 H -0.216 1.216 5 H -0.158 1.158 6 H -0.216 1.216 7 C -0.664 4.664 8 H 0.087 0.913 9 C 0.302 3.698 10 O -0.351 6.351 11 O -0.313 6.313 12 C 0.020 3.980 13 H 0.109 0.891 14 C 0.005 3.995 15 O -0.355 6.355 16 C -0.008 4.008 17 H 0.078 0.922 18 O -0.350 6.350 19 C 0.030 3.970 20 H 0.107 0.893 21 O -0.366 6.366 22 C 0.071 3.929 23 H 0.075 0.925 24 O -0.338 6.338 25 H 0.079 0.921 26 H 0.207 0.793 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.217 0.783 30 H 0.214 0.786 31 H 0.220 0.780 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.141 -2.476 -7.985 11.669 hybrid contribution 0.069 -1.658 -1.914 2.533 sum 8.210 -4.134 -9.899 13.508 Atomic orbital electron populations 1.70836 1.06827 1.30801 1.43969 1.25832 0.96231 1.02801 0.91221 0.84497 0.78063 0.75392 0.76745 1.21608 1.15755 1.21590 1.22647 0.90058 0.96012 1.57698 0.91259 1.19748 0.91444 0.83273 0.75318 1.86642 1.83585 1.23366 1.41520 1.87904 1.74947 1.54607 1.13839 1.22286 1.01052 0.89459 0.85217 0.89127 1.22131 0.96865 0.84690 0.95830 1.86719 1.70139 1.25703 1.52934 1.23233 0.82204 0.96660 0.98687 0.92173 1.86629 1.18336 1.80296 1.49778 1.22721 0.97908 0.81795 0.94559 0.89296 1.86454 1.77744 1.24017 1.48351 1.21751 0.96450 0.92132 0.82614 0.92545 1.86692 1.74129 1.29017 1.43994 0.92087 0.79271 0.93267 0.92991 0.78310 0.78580 0.78040 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.70 55.43 0.76 -26.57 16 2 C 0.05 1.37 5.47 -17.82 -0.10 1.27 16 3 Si 1.02 25.91 24.54 -169.99 -4.17 21.74 16 4 H -0.29 -6.96 7.05 56.52 0.40 -6.56 16 5 H -0.23 -5.67 5.45 56.52 0.31 -5.37 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 7 C -0.63 -17.77 6.43 -34.44 -0.22 -18.00 16 8 H 0.07 2.09 6.92 -52.49 -0.36 1.72 16 9 C 0.38 9.76 0.84 -27.83 -0.02 9.74 16 10 O -0.54 -14.61 13.00 -63.00 -0.82 -15.43 16 11 O -0.39 -9.25 7.16 -65.27 -0.47 -9.72 16 12 C 0.08 1.53 2.44 -26.69 -0.06 1.46 16 13 H 0.09 2.01 7.09 -51.93 -0.37 1.64 16 14 C 0.08 1.22 6.21 37.15 0.23 1.45 16 15 O -0.55 -9.04 13.63 -39.99 -0.54 -9.58 16 16 C 0.05 0.87 3.04 -26.59 -0.08 0.79 16 17 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 18 O -0.55 -8.75 12.52 -55.68 -0.70 -9.45 16 19 C 0.09 1.71 2.76 -26.55 -0.07 1.64 16 20 H 0.09 1.82 6.78 -51.93 -0.35 1.47 16 21 O -0.56 -9.21 12.79 -55.06 -0.70 -9.91 16 22 C 0.13 3.04 2.54 -26.59 -0.07 2.97 16 23 H 0.06 1.35 7.83 -51.93 -0.41 0.95 16 24 O -0.54 -12.60 12.77 -52.44 -0.67 -13.27 16 25 H 0.27 8.15 8.72 -40.82 -0.36 7.80 16 26 H 0.36 9.03 4.33 45.56 0.20 9.23 16 27 H 0.05 0.64 7.03 -51.93 -0.36 0.27 16 28 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.37 3.76 9.12 45.56 0.42 4.18 16 30 H 0.37 4.20 7.44 45.56 0.34 4.54 16 31 H 0.37 4.24 9.09 45.56 0.41 4.65 16 32 H 0.36 6.82 8.72 45.56 0.40 7.21 16 LS Contribution 258.75 15.07 3.90 3.90 Total: -1.00 -37.68 258.75 -4.00 -41.68 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.19 Total: 25.29 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.40 Total: 1.32 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.76 Total: -26.57 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: -3.90 Total: -67.36 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -4.17 Total: 21.74 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -37.68 -4.00 -41.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040670836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.389 kcal (2) G-P(sol) polarization free energy of solvation -37.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds