Wall clock time and date at job start Mon Mar 30 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38356 * 119.85557 * 269.72925 * 3 2 1 5 5 C 1.37960 * 120.14369 * 179.72062 * 4 3 2 6 6 C 1.39577 * 119.85443 * 0.54931 * 5 4 3 7 7 C 1.47841 * 120.14239 * 179.70527 * 6 5 4 8 8 O 1.21556 * 119.99579 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00445 * 0.02562 * 7 6 5 10 10 N 1.36594 * 120.00329 * 180.02562 * 9 7 6 11 11 C 1.46894 * 111.00264 * 179.97438 * 10 9 7 12 12 C 1.50711 * 109.47197 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99880 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99531 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00786 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 119.99678 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46670 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46953 * 120.00181 * 16 14 12 19 19 H 1.48500 * 109.47149 * 240.00309 * 16 14 12 20 20 C 1.39580 * 119.70869 * 359.72289 * 6 5 4 21 21 C 1.37954 * 119.85419 * 0.02562 * 20 6 5 22 22 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 27 27 H 1.08004 * 119.92358 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.06803 * 180.25007 * 5 4 3 29 29 H 0.97001 * 119.99753 * 0.02562 * 9 7 6 30 30 H 1.00902 * 111.00156 * 303.95847 * 10 9 7 31 31 H 1.09004 * 109.47322 * 299.99633 * 11 10 9 32 32 H 1.09003 * 109.47376 * 60.00298 * 11 10 9 33 33 H 0.96994 * 120.00471 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.07192 * 179.97438 * 20 6 5 35 35 H 1.07994 * 119.93054 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0682 -1.1999 5 6 2.7218 3.3708 -1.2069 6 6 2.9555 4.0316 0.0001 7 6 3.4488 5.4253 0.0001 8 8 3.6518 5.9981 1.0528 9 7 3.6733 6.0607 -1.1671 10 7 4.1295 7.3482 -1.1671 11 6 4.3053 7.8445 -2.5385 12 6 4.8079 9.2648 -2.4982 13 1 4.9792 9.7502 -1.5489 14 6 5.0490 9.9441 -3.6735 15 7 4.8400 9.3532 -4.8296 16 14 5.6713 11.7048 -3.6236 17 1 5.8233 12.1362 -2.2108 18 1 6.9860 11.7847 -4.3093 19 1 4.6997 12.5929 -4.3111 20 6 2.7218 3.3707 1.2071 21 6 2.2624 2.0699 1.2001 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.0907 1.5541 -2.1332 28 1 2.9010 3.8764 -2.1443 29 1 3.5109 5.6037 -2.0071 30 1 3.5141 7.9500 -0.6405 31 1 5.0275 7.2179 -3.0619 32 1 3.3496 7.8124 -3.0618 33 1 5.0092 9.8313 -5.6564 34 1 2.9011 3.8763 2.1445 35 1 2.0816 1.5573 2.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040834401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:50 Heat of formation + Delta-G solvation = 1.709665 kcal Electronic energy + Delta-G solvation = -16848.416551 eV Core-core repulsion = 14039.666246 eV Total energy + Delta-G solvation = -2808.750305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06409 -38.52688 -35.82273 -34.27831 -33.00555 -31.27099 -30.52911 -29.22100 -26.13916 -24.41169 -22.74152 -22.12673 -21.75575 -20.18204 -17.92862 -16.94692 -15.98380 -15.70101 -15.36345 -14.97741 -14.77256 -14.47547 -13.91095 -13.82143 -13.51326 -13.43069 -13.14712 -12.56811 -12.44244 -11.93231 -11.66770 -11.48421 -11.25407 -11.00251 -10.94948 -10.89387 -10.24057 -9.96189 -9.63443 -9.28449 -9.07554 -8.81849 -8.57947 -7.11133 -6.19528 -4.22455 0.85008 1.29442 3.06867 3.25560 3.31058 3.34877 3.44102 3.93819 4.35654 4.48258 4.59434 4.82845 4.88930 5.00123 5.07310 5.18216 5.25838 5.27418 5.38060 5.60232 5.65172 5.71074 5.78375 5.90271 5.92866 6.22758 6.32856 6.42647 6.79990 6.90886 7.03443 7.49175 7.70172 7.94252 8.16278 8.26325 8.85309 9.10469 9.43250 10.92039 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.049831 B = 0.003622 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.769229 B = 7727.709408 C = 8183.156488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.066 4.066 4 C -0.125 4.125 5 C -0.086 4.086 6 C -0.123 4.123 7 C 0.547 3.453 8 O -0.540 6.540 9 N -0.564 5.564 10 N -0.445 5.445 11 C 0.176 3.824 12 C -0.516 4.516 13 H 0.069 0.931 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.059 4.059 21 C -0.127 4.127 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.391 0.609 30 H 0.334 0.666 31 H 0.040 0.960 32 H -0.002 1.002 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -18.429 6.569 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.067 4.067 4 C -0.143 4.143 5 C -0.105 4.105 6 C -0.127 4.127 7 C 0.332 3.668 8 O -0.417 6.417 9 N -0.304 5.304 10 N -0.171 5.171 11 C 0.049 3.951 12 C -0.556 4.556 13 H 0.088 0.912 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.078 4.078 21 C -0.145 4.145 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.230 0.770 30 H 0.154 0.846 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.382 -18.162 7.160 20.872 hybrid contribution -0.619 1.002 -1.027 1.562 sum -8.001 -17.160 6.133 19.902 Atomic orbital electron populations 1.21753 0.94553 1.01736 1.02435 1.20590 0.96304 0.92521 1.03036 1.20085 0.97193 0.96159 0.93226 1.20952 1.00898 0.94679 0.97767 1.21372 0.97026 0.94850 0.97259 1.20011 1.03911 0.94407 0.94392 1.18050 0.79354 0.85783 0.83581 1.90737 1.52798 1.67456 1.30746 1.45364 1.66062 1.10946 1.08060 1.62467 1.44993 0.90327 1.19330 1.20113 0.96391 0.96752 0.81838 1.20986 1.44865 0.96352 0.93350 0.91246 1.24968 0.95300 0.98966 0.95088 1.69954 1.48575 1.37506 0.97407 0.86292 0.78409 0.83493 0.78400 1.19401 1.20800 1.20926 1.21253 0.94874 0.93830 0.97848 1.20990 1.01093 0.94733 0.97696 0.92420 0.92441 0.92365 0.90872 0.90848 0.85577 0.85534 0.76983 0.84637 0.94194 0.98438 0.92653 0.84595 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.09 -0.62 6.06 -27.89 -0.17 -0.79 16 3 C -0.07 -0.64 5.14 -104.53 -0.54 -1.18 16 4 C -0.12 -1.29 9.68 -39.64 -0.38 -1.67 16 5 C -0.09 -1.05 9.54 -39.18 -0.37 -1.43 16 6 C -0.12 -1.81 5.87 -104.97 -0.62 -2.42 16 7 C 0.55 10.22 7.84 -12.33 -0.10 10.13 16 8 O -0.54 -11.92 16.57 5.32 0.09 -11.83 16 9 N -0.56 -10.79 5.93 30.53 0.18 -10.61 16 10 N -0.45 -10.18 6.72 -11.40 -0.08 -10.26 16 11 C 0.18 4.47 5.54 -4.97 -0.03 4.44 16 12 C -0.52 -14.38 9.32 -34.44 -0.32 -14.70 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 16 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.06 -0.77 9.60 -39.19 -0.38 -1.15 16 21 C -0.13 -1.33 9.68 -39.64 -0.38 -1.71 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 28 H 0.13 1.39 6.41 -52.48 -0.34 1.05 16 29 H 0.39 6.48 6.38 -185.16 -1.18 5.30 16 30 H 0.33 7.63 8.73 -181.37 -1.58 6.04 16 31 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.14 1.80 7.65 -52.49 -0.40 1.40 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -31.86 305.26 -9.35 -41.21 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.85 Total: 5.17 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.01 Total: -9.53 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.84 Total: -45.94 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.86 -9.35 -41.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040834401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.923 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds