Wall clock time and date at job start Mon Mar 30 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38356 * 119.85557 * 269.72925 * 3 2 1 5 5 C 1.37960 * 120.14369 * 179.72062 * 4 3 2 6 6 C 1.39577 * 119.85443 * 0.54931 * 5 4 3 7 7 C 1.47841 * 120.14239 * 179.70527 * 6 5 4 8 8 O 1.21556 * 119.99579 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00445 * 0.02562 * 7 6 5 10 10 N 1.36594 * 120.00329 * 180.02562 * 9 7 6 11 11 C 1.46894 * 111.00264 * 179.97438 * 10 9 7 12 12 C 1.50711 * 109.47197 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99880 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99531 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00786 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 119.99678 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46670 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46953 * 120.00181 * 16 14 12 19 19 H 1.48500 * 109.47149 * 240.00309 * 16 14 12 20 20 C 1.39580 * 119.70869 * 359.72289 * 6 5 4 21 21 C 1.37954 * 119.85419 * 0.02562 * 20 6 5 22 22 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 27 27 H 1.08004 * 119.92358 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.06803 * 180.25007 * 5 4 3 29 29 H 0.97001 * 119.99753 * 0.02562 * 9 7 6 30 30 H 1.00902 * 111.00156 * 303.95847 * 10 9 7 31 31 H 1.09004 * 109.47322 * 299.99633 * 11 10 9 32 32 H 1.09003 * 109.47376 * 60.00298 * 11 10 9 33 33 H 0.96994 * 120.00471 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.07192 * 179.97438 * 20 6 5 35 35 H 1.07994 * 119.93054 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0682 -1.1999 5 6 2.7218 3.3708 -1.2069 6 6 2.9555 4.0316 0.0001 7 6 3.4488 5.4253 0.0001 8 8 3.6518 5.9981 1.0528 9 7 3.6733 6.0607 -1.1671 10 7 4.1295 7.3482 -1.1671 11 6 4.3053 7.8445 -2.5385 12 6 4.8079 9.2648 -2.4982 13 1 4.9792 9.7502 -1.5489 14 6 5.0490 9.9441 -3.6735 15 7 4.8400 9.3532 -4.8296 16 14 5.6713 11.7048 -3.6236 17 1 5.8233 12.1362 -2.2108 18 1 6.9860 11.7847 -4.3093 19 1 4.6997 12.5929 -4.3111 20 6 2.7218 3.3707 1.2071 21 6 2.2624 2.0699 1.2001 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.0907 1.5541 -2.1332 28 1 2.9010 3.8764 -2.1443 29 1 3.5109 5.6037 -2.0071 30 1 3.5141 7.9500 -0.6405 31 1 5.0275 7.2179 -3.0619 32 1 3.3496 7.8124 -3.0618 33 1 5.0092 9.8313 -5.6564 34 1 2.9011 3.8763 2.1445 35 1 2.0816 1.5573 2.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040834401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:50 Heat of formation + Delta-G solvation = -18.709128 kcal Electronic energy + Delta-G solvation = -16849.301977 eV Core-core repulsion = 14039.666246 eV Total energy + Delta-G solvation = -2809.635730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32293 -39.73113 -37.55484 -35.17811 -34.95033 -32.54530 -31.73493 -30.38439 -27.96424 -25.40279 -24.20175 -23.49793 -22.82192 -21.36960 -19.27987 -18.80545 -17.79032 -16.82479 -16.61059 -16.37785 -16.10236 -15.92611 -15.15924 -14.85083 -14.56996 -14.43530 -14.25984 -14.17934 -13.68501 -13.37588 -12.89163 -12.79492 -12.69921 -12.23326 -12.19692 -11.95662 -11.76620 -11.66707 -11.50003 -11.00830 -10.69189 -9.97258 -9.77147 -8.88300 -8.32519 -6.43834 -0.16981 0.40175 1.40684 1.41670 1.55383 1.82067 1.86091 2.39510 2.85206 3.02789 3.53924 3.79234 3.85064 3.93566 4.02328 4.28487 4.40905 4.55246 4.57272 4.65775 4.84706 4.92772 4.99791 5.01958 5.13819 5.14662 5.32307 5.37004 5.44255 5.55753 5.62432 5.74254 5.90668 5.93989 6.43041 6.54491 6.71571 7.26786 7.48661 8.79601 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.049831 B = 0.003622 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.769229 B = 7727.709408 C = 8183.156488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.055 4.055 4 C -0.124 4.124 5 C -0.088 4.088 6 C -0.150 4.150 7 C 0.548 3.452 8 O -0.581 6.581 9 N -0.563 5.563 10 N -0.454 5.454 11 C 0.193 3.807 12 C -0.542 4.542 13 H 0.064 0.936 14 C 0.011 3.989 15 N -0.925 5.925 16 Si 0.977 3.023 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.274 1.274 20 C -0.070 4.070 21 C -0.124 4.124 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.154 0.846 28 H 0.134 0.866 29 H 0.405 0.595 30 H 0.332 0.668 31 H 0.023 0.977 32 H -0.014 1.014 33 H 0.270 0.730 34 H 0.126 0.874 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.768 -20.104 6.406 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.055 4.055 4 C -0.142 4.142 5 C -0.107 4.107 6 C -0.154 4.154 7 C 0.336 3.664 8 O -0.462 6.462 9 N -0.305 5.305 10 N -0.179 5.179 11 C 0.066 3.934 12 C -0.581 4.581 13 H 0.082 0.918 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.801 3.199 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.199 1.199 20 C -0.089 4.089 21 C -0.142 4.142 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.172 0.828 28 H 0.152 0.848 29 H 0.245 0.755 30 H 0.151 0.849 31 H 0.041 0.959 32 H 0.004 0.996 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.963 -19.861 6.988 22.510 hybrid contribution -0.502 1.351 -0.951 1.726 sum -8.465 -18.511 6.037 21.231 Atomic orbital electron populations 1.21755 0.94026 1.02666 1.02011 1.20679 0.96563 0.90553 1.04492 1.20514 0.95010 0.97421 0.92602 1.21294 0.99782 0.93773 0.99356 1.21498 0.96881 0.95783 0.96515 1.19760 1.07043 0.92387 0.96239 1.18767 0.77997 0.87099 0.82507 1.90699 1.54636 1.68835 1.32015 1.45292 1.66469 1.09581 1.09184 1.62283 1.45926 0.91924 1.17731 1.19763 0.95053 0.95779 0.82800 1.21296 1.45681 0.97648 0.93499 0.91760 1.25857 0.95128 1.03306 0.94561 1.70043 1.49023 1.39293 0.98078 0.85219 0.78051 0.78137 0.78515 1.19089 1.20059 1.19919 1.21315 0.95621 0.95078 0.96903 1.21270 0.99995 0.93525 0.99405 0.92891 0.92883 0.90821 0.89480 0.89457 0.82808 0.84847 0.75475 0.84877 0.95905 0.99645 0.92156 0.85629 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.09 -0.88 6.06 29.85 0.18 -0.69 16 3 C -0.06 -0.91 5.14 -19.81 -0.10 -1.01 16 4 C -0.12 -2.23 9.68 22.23 0.22 -2.01 16 5 C -0.09 -2.06 9.54 22.53 0.21 -1.85 16 6 C -0.15 -4.44 5.87 -20.09 -0.12 -4.56 16 7 C 0.55 21.19 7.84 86.79 0.68 21.87 16 8 O -0.58 -26.78 16.57 -3.89 -0.06 -26.85 16 9 N -0.56 -22.22 5.93 -175.61 -1.04 -23.26 16 10 N -0.45 -21.44 6.72 -189.99 -1.28 -22.72 16 11 C 0.19 10.13 5.54 85.56 0.47 10.60 16 12 C -0.54 -30.76 9.32 25.60 0.24 -30.52 16 13 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 14 C 0.01 0.63 5.46 84.65 0.46 1.09 16 15 N -0.93 -53.59 13.29 21.45 0.28 -53.30 16 16 Si 0.98 43.69 29.54 68.60 2.03 45.72 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C -0.07 -1.82 9.60 22.53 0.22 -1.60 16 21 C -0.12 -2.33 9.68 22.23 0.22 -2.12 16 22 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 26 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 27 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.13 2.83 6.41 -2.91 -0.02 2.81 16 29 H 0.40 13.75 6.38 -215.50 -1.37 12.38 16 30 H 0.33 15.77 8.73 -210.56 -1.84 13.93 16 31 H 0.02 1.26 8.14 -2.38 -0.02 1.25 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.13 3.44 7.65 -2.91 -0.02 3.42 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -69.21 305.26 1.21 -68.00 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -2.11 Total: 23.92 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.39 Total: -11.50 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -2.03 Total: -99.28 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.06 Total: -26.85 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.21 1.21 -68.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040834401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.291 kcal (2) G-P(sol) polarization free energy of solvation -69.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds