Wall clock time and date at job start Mon Mar 30 2020 07:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99868 * 2 1 4 4 H 1.48502 * 109.47183 * 270.00171 * 3 2 1 5 5 H 1.48500 * 109.47040 * 30.00358 * 3 2 1 6 6 H 1.48500 * 109.47154 * 150.00226 * 3 2 1 7 7 C 1.37881 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99729 * 0.02562 * 7 2 1 10 10 C 1.53071 * 115.64988 * 56.43650 * 9 7 2 11 11 C 1.32217 * 106.48454 * 202.20801 * 10 9 7 12 12 C 1.53065 * 106.49817 * 0.02562 * 11 10 9 13 13 H 1.09001 * 115.65021 * 157.75891 * 12 11 10 14 14 O 1.46756 * 100.61381 * 32.03625 * 12 11 10 15 15 C 1.55991 * 105.84189 * 287.16263 * 12 11 10 16 16 H 1.09003 * 113.82116 * 306.13910 * 15 12 11 17 17 C 1.49394 * 109.26185 * 177.05056 * 15 12 11 18 18 O 1.20816 * 124.95060 * 72.91340 * 17 15 12 19 19 O 1.33501 * 109.82420 * 253.11688 * 17 15 12 20 20 C 1.33485 * 114.66523 * 359.84403 * 19 17 15 21 21 O 1.20820 * 125.23103 * 180.02562 * 20 19 17 22 22 C 1.51140 * 109.54092 * 0.02562 * 20 19 17 23 23 H 1.09007 * 113.76440 * 234.80693 * 22 20 19 24 24 H 0.96994 * 120.00208 * 359.97438 * 1 2 3 25 25 H 1.08004 * 126.76078 * 22.23369 * 10 9 7 26 26 H 1.08003 * 126.74874 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 0.2595 -2.6908 -1.1520 11 6 -0.6153 -3.5953 -0.7465 12 6 -0.1993 -3.9978 0.6705 13 1 -0.9863 -4.4300 1.2885 14 8 0.3754 -2.7362 1.1521 15 6 1.0842 -4.8690 0.5062 16 1 0.9616 -5.7089 -0.1776 17 6 1.5999 -5.2463 1.8566 18 8 1.0874 -6.0569 2.5915 19 8 2.7066 -4.5512 2.1291 20 6 3.0876 -3.7101 1.1652 21 8 4.0577 -2.9914 1.2106 22 6 2.1190 -3.7951 0.0081 23 1 2.5948 -4.0133 -0.9480 24 1 -0.4850 0.8400 0.0004 25 1 0.2723 -2.1867 -2.1071 26 1 -1.4578 -3.9755 -1.3052 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043450303.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:02 Heat of formation + Delta-G solvation = -110.861631 kcal Electronic energy + Delta-G solvation = -17263.390262 eV Core-core repulsion = 14274.025699 eV Total energy + Delta-G solvation = -2989.364562 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.09028 -40.97382 -40.11167 -38.48278 -34.83859 -33.30300 -32.35380 -30.84002 -27.41712 -26.07882 -23.67207 -23.13997 -21.26308 -20.02685 -19.04041 -18.79968 -18.42060 -18.05080 -16.98607 -16.41683 -16.02442 -15.85196 -15.68865 -15.51686 -14.38762 -14.01696 -13.69000 -13.10640 -12.98072 -12.90709 -12.75096 -12.69328 -12.46383 -12.11308 -11.80421 -11.36980 -11.21194 -10.93288 -10.60991 -9.76760 -8.24273 -6.46216 0.19051 1.14071 1.38816 1.40646 1.42356 1.48204 1.52857 2.34809 2.68378 2.82809 2.91175 2.98148 3.45964 3.69390 3.94173 4.05532 4.36142 4.47305 4.53676 4.73907 5.13018 5.41871 5.63868 5.64611 5.72998 5.83452 5.99287 6.13066 6.24722 6.69298 7.29707 8.79971 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.031670 B = 0.011553 C = 0.009499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.901992 B = 2422.940298 C = 2947.041646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.040 3.960 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.071 0.929 9 C 0.246 3.754 10 C -0.112 4.112 11 C -0.207 4.207 12 C 0.091 3.909 13 H 0.144 0.856 14 O -0.405 6.405 15 C -0.161 4.161 16 H 0.199 0.801 17 C 0.525 3.475 18 O -0.448 6.448 19 O -0.346 6.346 20 C 0.519 3.481 21 O -0.444 6.444 22 C -0.166 4.166 23 H 0.176 0.824 24 H 0.266 0.734 25 H 0.128 0.872 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -8.839 -4.864 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.165 4.165 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.089 0.911 9 C 0.209 3.791 10 C -0.131 4.131 11 C -0.225 4.225 12 C 0.033 3.967 13 H 0.161 0.839 14 O -0.325 6.325 15 C -0.180 4.180 16 H 0.216 0.784 17 C 0.367 3.633 18 O -0.329 6.329 19 O -0.264 6.264 20 C 0.361 3.639 21 O -0.324 6.324 22 C -0.185 4.185 23 H 0.194 0.806 24 H 0.075 0.925 25 H 0.146 0.854 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.523 -8.633 -4.053 9.551 hybrid contribution 0.440 1.119 0.273 1.233 sum -0.082 -7.514 -3.780 8.411 Atomic orbital electron populations 1.70112 1.06934 1.27748 1.46233 1.25703 0.95624 1.02327 0.92850 0.85615 0.78447 0.79026 0.78994 1.18480 1.20853 1.20297 1.20836 0.93194 0.89209 1.54627 0.91087 1.20553 0.85817 0.90028 0.82684 1.24654 0.95646 0.93722 0.99042 1.24464 1.00828 1.00852 0.96337 1.23696 0.92938 0.84648 0.95452 0.83880 1.90684 1.60184 1.38105 1.43575 1.24329 0.97780 1.01426 0.94505 0.78449 1.22373 0.75844 0.76239 0.88829 1.90701 1.55837 1.30240 1.56125 1.83814 1.43630 1.49287 1.49717 1.22991 0.83814 0.74858 0.82284 1.90682 1.28068 1.34301 1.79359 1.24754 0.95114 0.99079 0.99552 0.80648 0.92532 0.85392 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.63 12.33 21.45 0.26 -47.36 15 2 C 0.04 2.13 5.38 84.66 0.46 2.59 15 3 Si 0.95 42.42 29.54 68.60 2.03 44.44 15 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 7 C -0.54 -28.41 8.40 25.60 0.22 -28.20 15 8 H 0.07 3.82 6.61 -2.91 -0.02 3.80 15 9 C 0.25 11.05 0.83 -10.49 -0.01 11.04 15 10 C -0.11 -4.34 9.05 25.43 0.23 -4.11 15 11 C -0.21 -6.57 10.51 25.42 0.27 -6.30 15 12 C 0.09 3.09 5.03 31.65 0.16 3.25 15 13 H 0.14 4.26 8.14 -2.39 -0.02 4.24 15 14 O -0.40 -19.43 11.10 -148.98 -1.65 -21.09 15 15 C -0.16 -4.61 3.82 -9.42 -0.04 -4.65 15 16 H 0.20 3.53 8.14 -2.39 -0.02 3.51 15 17 C 0.53 17.97 7.64 70.83 0.54 18.51 15 18 O -0.45 -16.23 18.00 21.69 0.39 -15.84 15 19 O -0.35 -13.58 10.23 43.82 0.45 -13.14 15 20 C 0.52 21.21 7.34 71.38 0.52 21.73 15 21 O -0.44 -20.70 16.58 21.68 0.36 -20.35 15 22 C -0.17 -5.76 3.70 -8.88 -0.03 -5.80 15 23 H 0.18 4.81 8.14 -2.38 -0.02 4.79 15 24 H 0.27 13.79 8.31 -92.71 -0.77 13.02 15 25 H 0.13 4.92 8.06 -2.91 -0.02 4.90 15 26 H 0.17 4.00 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -66.20 236.25 5.38 -60.82 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.23 Total: 4.44 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 2.31 Total: 8.07 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.26 Total: -47.36 kcal Atomic # 8 Polarization: -69.95 SS G_CDS: -0.45 Total: -70.41 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -66.20 5.38 -60.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043450303.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.039 kcal (2) G-P(sol) polarization free energy of solvation -66.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds