Wall clock time and date at job start Mon Mar 30 2020 07:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.51026 * 114.20045 * 51.63267 * 9 7 2 11 11 C 1.33304 * 108.80227 * 206.39269 * 10 9 7 12 12 C 1.55976 * 104.55414 * 355.77671 * 11 10 9 13 13 H 1.09001 * 117.92454 * 163.96834 * 12 11 10 14 14 O 1.48697 * 96.86181 * 37.85650 * 12 11 10 15 15 C 1.48554 * 100.09236 * 292.36562 * 12 11 10 16 16 H 1.08997 * 97.53135 * 349.05163 * 15 12 11 17 17 C 1.43000 * 149.05933 * 232.04868 * 15 12 11 18 18 O 1.20813 * 129.03649 * 352.01567 * 17 15 12 19 19 O 1.42256 * 100.37750 * 170.38591 * 17 15 12 20 20 C 1.37244 * 112.32930 * 24.25519 * 19 17 15 21 21 O 1.20816 * 126.86719 * 187.68007 * 20 19 17 22 22 C 1.49425 * 106.25891 * 7.70266 * 20 19 17 23 23 H 1.09001 * 112.73190 * 84.95812 * 22 20 19 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.07997 * 125.42559 * 27.12153 * 10 9 7 26 26 H 1.07994 * 127.64974 * 175.24970 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 0.2015 -2.6081 -1.0799 11 6 -0.7446 -3.4558 -0.6758 12 6 -0.2253 -4.0007 0.6903 13 1 -0.9381 -4.5046 1.3431 14 8 0.3671 -2.7263 1.1762 15 6 0.9479 -4.7861 0.2282 16 1 0.7318 -4.7509 -0.8395 17 6 1.6692 -6.0208 0.2152 18 8 1.4743 -7.0227 0.8617 19 8 2.6368 -5.7418 -0.7895 20 6 2.8664 -4.3963 -0.9330 21 8 3.5324 -3.8617 -1.7875 22 6 2.1284 -3.7250 0.1795 23 1 2.7026 -3.6905 1.1054 24 1 -0.4850 -0.8401 -0.0004 25 1 0.2236 -2.0923 -2.0284 26 1 -1.6682 -3.7020 -1.1786 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043450305.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:03 Heat of formation + Delta-G solvation = -50.016354 kcal Electronic energy + Delta-G solvation = -17153.894703 eV Core-core repulsion = 14167.168590 eV Total energy + Delta-G solvation = -2986.726113 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.50752 -41.12956 -40.25165 -38.58814 -35.14762 -33.58118 -32.53618 -30.74133 -27.26866 -26.40358 -24.30534 -23.01398 -20.93790 -20.36021 -19.68666 -19.30098 -18.35213 -17.61643 -17.11224 -16.56461 -16.42119 -15.93375 -15.66159 -15.52820 -14.66834 -14.50847 -13.79799 -13.38648 -13.23855 -13.10756 -12.76200 -12.45665 -12.37242 -11.92524 -11.80504 -11.45103 -11.15834 -10.92264 -10.71109 -10.02269 -8.62298 -6.55511 -0.09993 0.61359 0.76782 0.95217 1.57110 1.61904 1.80793 1.82963 2.24189 2.54486 2.77816 2.94210 3.23474 3.54818 3.68983 3.72021 3.79523 4.06863 4.41364 4.65043 4.78535 4.90697 5.03564 5.30937 5.54652 5.62618 5.83593 5.86911 6.07385 6.52954 7.34404 8.72791 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.035261 B = 0.010180 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.878421 B = 2749.941670 C = 3179.494091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.004 4.004 3 Si 1.112 2.888 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.613 4.613 8 H 0.062 0.938 9 C 0.238 3.762 10 C -0.163 4.163 11 C -0.198 4.198 12 C 0.140 3.860 13 H 0.176 0.824 14 O -0.407 6.407 15 C -0.240 4.240 16 H 0.111 0.889 17 C 0.586 3.414 18 O -0.401 6.401 19 O -0.367 6.367 20 C 0.530 3.470 21 O -0.424 6.424 22 C -0.140 4.140 23 H 0.150 0.850 24 H 0.280 0.720 25 H 0.118 0.882 26 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -8.010 -0.365 8.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.209 4.209 3 Si 0.933 3.067 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.649 4.649 8 H 0.080 0.920 9 C 0.202 3.798 10 C -0.182 4.182 11 C -0.216 4.216 12 C 0.083 3.917 13 H 0.193 0.807 14 O -0.328 6.328 15 C -0.259 4.259 16 H 0.128 0.872 17 C 0.427 3.573 18 O -0.277 6.277 19 O -0.290 6.290 20 C 0.369 3.631 21 O -0.302 6.302 22 C -0.159 4.159 23 H 0.167 0.833 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.352 -6.648 -0.404 6.669 hybrid contribution 0.294 -1.626 -0.302 1.679 sum -0.058 -8.273 -0.706 8.304 Atomic orbital electron populations 1.70791 1.07765 1.32240 1.43204 1.27197 0.96571 1.06017 0.91095 0.82996 0.74294 0.71371 0.78017 1.20672 1.19634 1.19487 1.21790 0.94247 0.90488 1.58419 0.92010 1.19466 0.85836 0.92256 0.82275 1.24706 0.97253 0.96543 0.99727 1.26186 0.99730 0.98118 0.97580 1.22698 0.90778 0.84133 0.94111 0.80679 1.91322 1.60176 1.36998 1.44333 1.23046 0.99740 0.94347 1.08768 0.87216 1.20494 0.76390 0.86968 0.73482 1.90758 1.65255 1.34680 1.36966 1.86923 1.58935 1.29391 1.53703 1.22422 0.77258 0.79215 0.84223 1.90738 1.36086 1.65886 1.37497 1.23938 0.95377 0.96904 0.99727 0.83286 0.90677 0.86449 0.80043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.34 13.37 21.45 0.29 -51.06 15 2 C 0.00 -0.20 5.35 84.65 0.45 0.25 15 3 Si 1.11 47.47 29.90 68.60 2.05 49.52 15 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15 7 C -0.61 -32.47 8.91 25.60 0.23 -32.24 15 8 H 0.06 3.26 7.81 -2.91 -0.02 3.24 15 9 C 0.24 10.86 1.16 -12.58 -0.01 10.85 15 10 C -0.16 -6.83 7.02 24.67 0.17 -6.66 15 11 C -0.20 -6.51 9.86 26.35 0.26 -6.25 15 12 C 0.14 4.53 6.09 30.22 0.18 4.71 15 13 H 0.18 4.22 8.14 -2.39 -0.02 4.20 15 14 O -0.41 -18.45 10.92 -148.98 -1.63 -20.08 15 15 C -0.24 -7.43 4.12 -13.08 -0.05 -7.49 15 16 H 0.11 3.40 4.01 -2.39 -0.01 3.40 15 17 C 0.59 17.27 8.65 69.01 0.60 17.87 15 18 O -0.40 -12.35 17.99 20.65 0.37 -11.98 15 19 O -0.37 -11.75 10.72 -77.52 -0.83 -12.58 15 20 C 0.53 19.40 7.95 70.84 0.56 19.96 15 21 O -0.42 -17.81 18.00 21.34 0.38 -17.43 15 22 C -0.14 -5.27 3.18 -10.24 -0.03 -5.31 15 23 H 0.15 5.36 8.14 -2.39 -0.02 5.34 15 24 H 0.28 15.67 5.05 -92.71 -0.47 15.21 15 25 H 0.12 5.15 8.06 -2.91 -0.02 5.12 15 26 H 0.18 4.48 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -63.08 233.81 4.53 -58.55 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.53 Total: 9.35 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 2.36 Total: -4.31 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.29 Total: -51.06 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -1.70 Total: -62.06 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.05 Total: 49.52 kcal Total: -63.08 4.53 -58.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043450305.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.536 kcal (2) G-P(sol) polarization free energy of solvation -63.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds