Wall clock time and date at job start Mon Mar 30 2020 07:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99727 * 2 1 4 4 H 1.48497 * 109.47039 * 240.00000 * 3 2 1 5 5 H 1.48499 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47200 * 120.00213 * 3 2 1 7 7 C 1.37873 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46942 * 180.02562 * 10 9 7 12 12 C 1.34966 * 125.48952 * 125.00140 * 11 10 9 13 13 N 1.36305 * 106.78017 * 179.97438 * 12 11 10 14 14 C 1.40019 * 126.86540 * 179.73673 * 13 12 11 15 15 C 1.39300 * 120.85292 * 359.72704 * 14 13 12 16 16 C 1.38020 * 119.08388 * 179.71100 * 15 14 13 17 17 N 1.31933 * 120.82787 * 0.56987 * 16 15 14 18 18 C 1.31938 * 121.87750 * 359.71929 * 17 16 15 19 19 C 1.38013 * 120.83420 * 359.97438 * 18 17 16 20 20 N 1.40321 * 106.26839 * 359.97438 * 13 12 11 21 21 N 1.28767 * 108.01140 * 359.97438 * 20 13 12 22 22 H 0.96999 * 120.00414 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47310 * 60.00457 * 9 7 2 24 24 H 1.09001 * 109.47445 * 300.00512 * 9 7 2 25 25 H 1.08999 * 109.47001 * 60.00363 * 10 9 7 26 26 H 1.09002 * 109.46556 * 300.00119 * 10 9 7 27 27 H 1.08001 * 126.61153 * 359.96223 * 12 11 10 28 28 H 1.08004 * 120.45834 * 359.97438 * 15 14 13 29 29 H 1.07994 * 119.58697 * 180.29569 * 16 15 14 30 30 H 1.08000 * 119.58287 * 179.97438 * 18 17 16 31 31 H 1.07996 * 120.46377 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 6 1.6462 -5.9606 -0.9016 13 7 0.7838 -6.9536 -0.5437 14 6 0.5962 -8.1786 -1.1953 15 6 1.3220 -8.4969 -2.3409 16 6 1.1123 -9.7173 -2.9505 17 7 0.2302 -10.5715 -2.4678 18 6 -0.4804 -10.3041 -1.3888 19 6 -0.3251 -9.1080 -0.7179 20 7 0.1175 -6.5004 0.6051 21 7 0.5663 -5.3274 0.8891 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6043 0.8895 26 1 2.8720 -3.6042 -0.8905 27 1 2.3226 -5.9674 -1.7435 28 1 2.0421 -7.8001 -2.7440 29 1 1.6741 -9.9744 -3.8362 30 1 -1.1928 -11.0303 -1.0260 31 1 -0.9097 -8.8955 0.1650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045245281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:25 Heat of formation + Delta-G solvation = 127.573837 kcal Electronic energy + Delta-G solvation = -15994.980817 eV Core-core repulsion = 13278.604100 eV Total energy + Delta-G solvation = -2716.376717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14322 -40.31615 -35.39068 -33.94267 -32.10018 -31.67498 -31.01834 -28.97587 -25.36905 -24.77827 -23.88902 -22.00265 -21.53777 -20.18355 -18.28376 -16.48371 -16.29235 -16.19087 -15.83118 -15.37777 -14.60824 -14.44829 -14.15511 -14.04628 -13.53853 -13.02255 -12.32544 -12.18344 -11.72891 -11.60481 -11.06613 -11.02984 -10.86886 -10.60588 -10.01030 -9.96041 -9.63840 -9.62796 -9.43916 -9.13957 -8.50847 -8.32663 -5.98134 -4.01869 0.28876 0.69070 1.80465 2.03923 2.79002 3.34163 3.38982 3.40805 3.44031 4.05828 4.08933 4.33642 4.46436 4.61006 4.67430 4.99655 5.05990 5.16195 5.33215 5.33607 5.37437 5.42191 5.86386 6.11318 6.28659 6.38344 6.55315 6.67465 6.97694 7.55062 7.68420 7.82888 8.02120 8.31777 8.39416 9.05140 9.61976 11.13015 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.057607 B = 0.003892 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.937336 B = 7192.374052 C = 7381.416304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.038 4.038 11 C -0.004 4.004 12 C 0.008 3.992 13 N -0.340 5.340 14 C 0.206 3.794 15 C -0.191 4.191 16 C 0.126 3.874 17 N -0.493 5.493 18 C 0.124 3.876 19 C -0.172 4.172 20 N -0.067 5.067 21 N -0.205 5.205 22 H 0.261 0.739 23 H 0.014 0.986 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -19.064 -5.518 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.077 4.077 11 C -0.138 4.138 12 C -0.139 4.139 13 N -0.123 5.123 14 C 0.104 3.896 15 C -0.214 4.214 16 C -0.031 4.031 17 N -0.203 5.203 18 C -0.033 4.033 19 C -0.194 4.194 20 N -0.044 5.044 21 N -0.077 5.077 22 H 0.071 0.929 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.211 0.789 28 H 0.163 0.837 29 H 0.184 0.816 30 H 0.184 0.816 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.656 -20.000 -4.834 20.643 hybrid contribution 1.229 1.986 -0.417 2.373 sum 2.886 -18.014 -5.251 18.984 Atomic orbital electron populations 1.69969 1.06089 1.26741 1.50366 1.25018 0.94820 0.99245 0.95267 0.86647 0.79552 0.83129 0.78591 1.20255 1.21328 1.20191 1.21174 0.92987 0.90906 1.51211 0.92528 1.19055 0.93682 0.90195 0.97992 1.20338 0.97730 0.87835 1.01848 1.22388 0.99023 0.99304 0.93039 1.23310 0.98338 0.89050 1.03199 1.47895 1.29643 1.12381 1.22429 1.17875 0.96104 0.83574 0.92044 1.21994 1.02897 1.00471 0.96043 1.22685 0.93753 0.88385 0.98320 1.67716 1.06467 1.33745 1.12382 1.22752 0.96083 0.94339 0.90119 1.22019 0.99646 0.94451 1.03320 1.82080 1.17257 1.07012 0.98031 1.74348 1.07829 1.03911 1.21582 0.92907 0.96735 0.95463 0.90948 0.91146 0.78892 0.83685 0.81604 0.81606 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.73 4.93 -27.88 -0.14 0.60 16 10 C -0.04 -0.76 5.71 -27.88 -0.16 -0.92 16 11 C 0.00 -0.07 6.37 -83.09 -0.53 -0.60 16 12 C 0.01 0.12 10.83 -16.73 -0.18 -0.06 16 13 N -0.34 -5.10 3.85 -10.35 -0.04 -5.14 16 14 C 0.21 2.47 6.75 -83.33 -0.56 1.91 16 15 C -0.19 -1.75 9.55 -39.27 -0.38 -2.12 16 16 C 0.13 1.05 11.18 -17.59 -0.20 0.85 16 17 N -0.49 -4.87 10.36 -13.32 -0.14 -5.01 16 18 C 0.12 1.11 11.17 -17.59 -0.20 0.92 16 19 C -0.17 -1.83 9.76 -39.27 -0.38 -2.21 16 20 N -0.07 -1.22 13.28 60.35 0.80 -0.42 16 21 N -0.21 -4.20 12.30 33.15 0.41 -3.80 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.19 1.92 7.26 -52.49 -0.38 1.54 16 28 H 0.15 1.00 6.99 -52.48 -0.37 0.63 16 29 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.57 7.84 -52.49 -0.41 1.16 16 LS Contribution 281.53 15.07 4.24 4.24 Total: -1.00 -33.70 281.53 -5.38 -39.08 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: -3.23 Total: -4.00 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -3.13 Total: -15.05 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.77 Total: -40.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.70 -5.38 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045245281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.653 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds