Wall clock time and date at job start Mon Mar 30 2020 07:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38589 * 119.99756 * 2 1 4 4 C 1.39461 * 120.48610 * 359.97438 * 3 2 1 5 5 C 1.39442 * 118.19468 * 179.97438 * 4 3 2 6 6 C 1.48032 * 120.52564 * 180.02562 * 5 4 3 7 7 C 1.39897 * 119.88133 * 359.70825 * 6 5 4 8 8 C 1.36290 * 120.12225 * 179.76152 * 7 6 5 9 9 C 1.40909 * 119.87804 * 0.48997 * 8 7 6 10 10 C 1.41057 * 120.12073 * 179.74200 * 9 8 7 11 11 H 1.07999 * 119.99976 * 204.65825 * 10 9 8 12 12 C 1.40091 * 120.00160 * 24.66274 * 10 9 8 13 13 N 1.30740 * 120.00228 * 17.91396 * 12 10 9 14 14 Si 1.86798 * 120.00102 * 197.91885 * 12 10 9 15 15 H 1.48504 * 109.47239 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47626 * 119.99777 * 14 12 10 17 17 H 1.48503 * 109.46903 * 239.99657 * 14 12 10 18 18 C 1.40908 * 119.75852 * 359.76416 * 9 8 7 19 19 C 1.36297 * 119.87602 * 0.02562 * 18 9 8 20 20 N 1.33519 * 118.94487 * 0.02663 * 5 4 3 21 21 C 1.31568 * 120.86797 * 359.97438 * 20 5 4 22 22 N 1.31845 * 122.00548 * 359.97438 * 21 20 5 23 23 H 1.08998 * 109.47291 * 60.00525 * 1 2 3 24 24 H 1.09000 * 109.46582 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47653 * 300.00116 * 1 2 3 26 26 H 0.96997 * 120.00028 * 179.97438 * 2 1 3 27 27 H 1.08007 * 120.90470 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.93935 * 359.97438 * 7 6 5 29 29 H 1.08005 * 120.06138 * 180.23327 * 8 7 6 30 30 H 0.96996 * 120.00225 * 180.02562 * 13 12 10 31 31 H 1.07999 * 120.05942 * 179.97438 * 18 9 8 32 32 H 1.07998 * 119.94068 * 180.02562 * 19 18 9 33 33 H 1.08001 * 118.99642 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1579 1.2002 0.0000 4 6 1.4708 2.4139 -0.0005 5 6 2.2157 3.5926 0.0000 6 6 1.5394 4.9094 0.0001 7 6 0.1420 4.9752 -0.0066 8 6 -0.4858 6.1849 -0.0017 9 6 0.2753 7.3708 -0.0003 10 6 -0.3691 8.6255 -0.0007 11 1 0.1408 9.4944 -0.3900 12 6 -1.6705 8.7448 0.5038 13 7 -2.1585 7.8130 1.2804 14 14 -2.7088 10.2349 0.0670 15 1 -1.9311 11.1374 -0.8195 16 1 -3.9403 9.7919 -0.6345 17 1 -3.0801 10.9605 1.3084 18 6 1.6826 7.2986 0.0011 19 6 2.3001 6.0836 0.0005 20 7 3.5486 3.5148 0.0005 21 6 4.1566 2.3480 0.0010 22 7 3.4881 1.2116 0.0015 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9500 -0.8400 0.0004 27 1 0.3911 2.4400 -0.0005 28 1 -0.4404 4.0658 -0.0123 29 1 -1.5647 6.2346 -0.0031 30 1 -3.0598 7.8954 1.6294 31 1 2.2707 8.2044 0.0017 32 1 3.3786 6.0270 0.0019 33 1 5.2363 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061897152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:25 Heat of formation + Delta-G solvation = 62.542447 kcal Electronic energy + Delta-G solvation = -17427.830955 eV Core-core repulsion = 14645.834037 eV Total energy + Delta-G solvation = -2781.996919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.22506 -37.63529 -36.05826 -34.19398 -32.55793 -30.90802 -29.48067 -29.24932 -26.47967 -25.77275 -23.34833 -22.44174 -20.68861 -20.33509 -17.74212 -17.50895 -16.78613 -15.47115 -14.95639 -14.74594 -14.71851 -14.51083 -13.85719 -13.59690 -13.47084 -13.12494 -12.67775 -12.22696 -12.09984 -11.87812 -11.46989 -11.23702 -11.00329 -10.76001 -10.56017 -10.17252 -9.88090 -9.61907 -9.44924 -9.14271 -8.55641 -7.89551 -7.66715 -7.32943 -7.03117 -4.55418 1.46624 1.87309 2.72644 2.94578 3.00208 3.06945 3.18216 3.26929 3.73886 4.31799 4.73902 4.80591 4.93202 5.15054 5.35941 5.42092 5.59905 5.65216 5.85498 5.99787 6.20776 6.31344 6.42449 6.69745 6.80656 6.85277 7.07132 7.16083 7.24933 7.46642 7.57902 7.74474 7.86909 7.90114 8.08583 8.11153 8.41115 8.63285 8.76451 8.92715 9.87595 Molecular weight = 255.11amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.004732 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.819166 B = 5916.045836 C = 6658.232170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.728 5.728 3 C 0.430 3.570 4 C -0.315 4.315 5 C 0.287 3.713 6 C -0.215 4.215 7 C -0.061 4.061 8 C -0.178 4.178 9 C 0.126 3.874 10 C -0.438 4.438 11 H 0.086 0.914 12 C 0.073 3.927 13 N -0.771 5.771 14 Si 0.913 3.087 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.271 1.271 18 C -0.239 4.239 19 C -0.027 4.027 20 N -0.573 5.573 21 C 0.333 3.667 22 N -0.614 5.614 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.402 0.598 27 H 0.134 0.866 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.286 0.714 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.375 -8.493 -1.563 8.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.361 5.361 3 C 0.189 3.811 4 C -0.342 4.342 5 C 0.151 3.849 6 C -0.218 4.218 7 C -0.080 4.080 8 C -0.197 4.197 9 C 0.122 3.878 10 C -0.466 4.466 11 H 0.104 0.896 12 C -0.148 4.148 13 N -0.394 5.394 14 Si 0.736 3.264 15 H -0.180 1.180 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.259 4.259 19 C -0.046 4.046 20 N -0.293 5.293 21 C 0.043 3.957 22 N -0.341 5.341 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.237 0.763 27 H 0.152 0.848 28 H 0.110 0.890 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.887 -8.550 -1.408 8.710 hybrid contribution -1.278 0.163 -0.019 1.288 sum -0.391 -8.387 -1.427 8.517 Atomic orbital electron populations 1.21578 0.79008 1.02390 1.01876 1.44085 1.05744 1.05117 1.81184 1.18395 0.88512 0.86305 0.87852 1.21982 1.01729 0.91895 1.18590 1.20095 0.87922 0.93004 0.83848 1.17730 0.92389 0.89037 1.22618 1.20469 0.92583 0.96952 0.98021 1.20964 0.99841 0.91163 1.07728 1.17809 0.91170 0.93301 0.85480 1.19873 0.97845 0.95728 1.33111 0.89636 1.26099 0.98132 0.98087 0.92485 1.69797 1.16638 1.32672 1.20305 0.86171 0.79684 0.80946 0.79561 1.18029 1.19375 1.19659 1.20754 0.94515 0.95970 1.14627 1.20484 0.98175 0.91722 0.94244 1.68457 1.10644 1.28594 1.21569 1.24378 1.00006 0.82231 0.89121 1.67780 1.06754 1.32921 1.26638 0.92484 0.90591 0.92451 0.76319 0.84829 0.88996 0.86208 0.90279 0.88466 0.87686 0.79915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 9.95 59.85 0.60 1.57 16 2 N -0.73 -9.46 5.87 -67.08 -0.39 -9.85 16 3 C 0.43 7.38 7.71 -154.77 -1.19 6.18 16 4 C -0.31 -5.92 8.76 -38.68 -0.34 -6.26 16 5 C 0.29 6.12 6.75 -82.67 -0.56 5.56 16 6 C -0.21 -4.96 5.90 -104.64 -0.62 -5.57 16 7 C -0.06 -1.39 9.37 -39.66 -0.37 -1.76 16 8 C -0.18 -4.40 8.63 -39.27 -0.34 -4.74 16 9 C 0.13 3.21 5.57 -106.81 -0.60 2.61 16 10 C -0.44 -10.87 9.04 -37.82 -0.34 -11.21 16 11 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 12 C 0.07 1.70 5.13 -17.32 -0.09 1.61 16 13 N -0.77 -18.50 10.96 55.55 0.61 -17.89 16 14 Si 0.91 17.19 29.60 -169.99 -5.03 12.16 16 15 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 16 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 18 C -0.24 -5.76 9.73 -39.27 -0.38 -6.14 16 19 C -0.03 -0.63 9.52 -39.66 -0.38 -1.01 16 20 N -0.57 -11.65 9.57 -11.21 -0.11 -11.76 16 21 C 0.33 5.84 12.27 -92.30 -1.13 4.71 16 22 N -0.61 -10.80 10.46 -13.86 -0.15 -10.95 16 23 H 0.06 0.59 7.97 -51.93 -0.41 0.18 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.60 7.97 -51.93 -0.41 0.19 16 26 H 0.40 4.49 8.95 -40.82 -0.37 4.12 16 27 H 0.13 2.33 5.10 -52.48 -0.27 2.06 16 28 H 0.09 1.87 6.24 -52.49 -0.33 1.54 16 29 H 0.12 3.00 6.16 -52.48 -0.32 2.68 16 30 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 31 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.11 2.31 7.55 -52.49 -0.40 1.91 16 33 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -28.22 286.51 -9.82 -38.04 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.33 Total: 10.38 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -5.74 Total: -14.45 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.04 Total: -50.45 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.22 -9.82 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061897152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.580 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds